Ribbon (2.10) -2

[Ribbon (2.10) -2]

|LCS| denotes the length of the longest common subsequence.
|Key Seq.| denotes the length of the key sequence.
(Upon length counting, residues without 5-tile code are omitted, such as two residues at both ends.)
In the images of superimposition, the C-terminal of the key sequence is connected with the N-terminal of a target sequecne
(because of the DaliLite output format).
Click the images to view larger image.
Click the filenames to view the corresponding PDB file
Click "LCS" to view the longest common subsequence

Key sequence	ASTRAL dataset search by ComSubstruct		Pairwise Comparison by DALI
	Frequency table of the ratio of seq. lengths Execution time	[Best result] \|LCS\|/\|Key Seq.\| value	Superimpos.	Z-score
		Length of the LCS		Num. of aligned residues
		[2nd best] \|LCS\|/\|Key Seq.\| value		RMSD of CAs
		Length of the LCS		Seq. identity

Laminin (2.10.25.10)

1b9wA01 (length 47)	\|LCS\|/\|Key Seq.\|: [0.9, 1.0] 0 [0.8, 0.9) 1083 [0.7, 0.8) 90038 Exe. Time: 9.9 (sec.)	d1b9wa1 \|L\|/\|K\|: 0.87 LCS len.: 41	(identical)	Z: - AR: 41 RMSD 0.0A SI: 100%
1b9wA01 (length 47)		d1n1ia1 \|L\|/\|K\|: 0.85 LCS len. 40		Z: 7.7 AR: 44 RMSD: 0.9A SI: 86%

1b9wA02 (length 34)	\|LCS\|/\|Key Seq.\|: [0.9, 1.0] 3 [0.8, 0.9) 237 [0.7, 0.8) 70801 Exe. Time: 7.8 (sec.)	d1b9wa2 (Res51-87) \|L\|/\|K\|: 1.00 LCS len.: 34	(identical)	Z: - AR: 34 RMSD 0.0A SI: 100%
1b9wA02 (length 34)		d1mzaa_ (Res173B-211) \|L\|/\|K\|: 0.91 LCS len. 31	No significant similarities	Z: - AR: - RMSD: -A SI: -%

1nziB02 (length 36)	\|LCS\|/\|Key Seq.\|: [0.9, 1.0] 1 [0.8, 0.9) 1514 [0.7, 0.8) 102256 Exe. Time: 9.0 (sec.)	d1szba2 \|L\|/\|K\|: 0.95 LCS len.: 36		Z: 6.7 AR: 42 RMSD 1.3A SI: 36%
1nziB02 (length 36)		d1nzia2 \|L\|/\|K\|: 0.90 LCS len. 34		Z: 8.4 AR: 41 RMSD: 0.5A SI: 100%

2bokL00 (length 45)	\|LCS\|/\|Key Seq.\|: [0.9, 1.0] 2 [0.8, 0.9) 800 [0.7, 0.8) 59576 Exe. Time: 8.9 (sec.)	d1fjsl_ \|L\|/\|K\|: 0.91 LCS len.: 41		Z: 9.6 AR: 49 RMSD 0.7A SI: 100%
2bokL00 (length 45)		d1klil_ (Res90-138) \|L\|/\|K\|: 0.91 LCS len. 41		Z: 8.4 AR: 46 RMSD: 0.8A SI: 43%

2fd6A01 (length 35)	\|LCS\|/\|Key Seq.\|: [0.9, 1.0] 0 [0.8, 0.9) 820 [0.7, 0.8) 61005 Exe. Time: 8.1 (sec.)	d1qc6a_ (Res1040-1077) \|L\|/\|K\|: 0.86 LCS len.: 30	No significant similarities	Z: - AR: - RMSD -A SI: -%
2fd6A01 (length 35)		d1ezxc_ (Res44-104) \|L\|/\|K\|: 0.86 LCS len. 30	No significant similarities	Z: - AR: - RMSD: -A SI: -%

Complement Module, domain 1 (2.10.70.10)

1elvA03 (length 62)	\|LCS\|/\|Key Seq.\|: [0.9, 1.0] 1 [0.8, 0.9) 1610 [0.7, 0.8) 47820 Exe. Time: 10.0 (sec.)	d1elva2 \|L\|/\|K\|: 1.00 LCS len.: 62	(identical)	Z: - AR: 62 RMSD 0.0A SI: 100%
1elvA03 (length 62)		d1md8a2 \|L\|/\|K\|: 0.87 LCS len. 54		Z: 11.1 AR: 64 RMSD: 1.6A SI: 41%

1g44C04 (length 38)	\|LCS\|/\|Key Seq.\|: [0.9, 1.0] 0 [0.8, 0.9) 31966 [0.7, 0.8) 85088 Exe. Time: 8.9 (sec.)	d1nh2d2 (Res60-113) \|L\|/\|K\|: 0.90 LCS len.: 34	No significant similarities	Z: - AR: - RMSD -A SI: -%
1g44C04 (length 38)		d1g40a4 (Res187-227) \|L\|/\|K\|: 0.90 LCS len. 34		Z: 6.2 AR: 39 RMSD: 0.7A SI: 100%

1h03P01 (length 58)	\|LCS\|/\|Key Seq.\|: [0.9, 1.0] 53 [0.8, 0.9) 25516 [0.7, 0.8) 41299 Exe. Time: 10.6 (sec.)	d1h03p1 \|L\|/\|K\|: 1.00 LCS len.: 58	(identical)	Z: - AR: 58 RMSD 0.0A SI: 100%
1h03P01 (length 58)		d1gw0a2 (Res215-277) \|L\|/\|K\|: 0.93 LCS len. 54	No significant similarities	Z: - AR: - RMSD: -A SI: -%

1h03P02 (length 57)	\|LCS\|/\|Key Seq.\|: [0.9, 1.0] 97 [0.8, 0.9) 28229 [0.7, 0.8) 42670 Exe. Time: 10.3 (sec.)	d1h03p2 \|L\|/\|K\|: 1.00 LCS len.: 57	(identical)	Z: - AR: 57 RMSD 0.0A SI: 100%
1h03P02 (length 57)		d1h03p1 \|L\|/\|K\|: 0.93 LCS len. 53		Z: 9.0 AR: 60 RMSD: 2.2A SI: 32%

1ly2A01 (length 61)	\|LCS\|/\|Key Seq.\|: [0.9, 1.0] 4 [0.8, 0.9) 15673 [0.7, 0.8) 37239 Exe. Time: 9.8 (sec.)	d1ly2a1 \|L\|/\|K\|: 1.00 LCS len.: 61	(identical)	Z: - AR: 61 RMSD 0.0A SI: 100%
1ly2A01 (length 61)		d1fo0a_ (Res16-81) \|L\|/\|K\|: 0.90 LCS len. 55		Z: 0.1 AR: 28 RMSD: 3.1A SI: 4%

1ly2A02 (length 55)	\|LCS\|/\|Key Seq.\|: [0.9, 1.0] 8 [0.8, 0.9) 23202 [0.7, 0.8) 48661 Exe. Time: 9.8 (sec.)	d1ly2a2 \|L\|/\|K\|: 1.00 LCS len.: 55	(identical)	Z: - AR: 55 RMSD 0.0A SI: 100%
1ly2A02 (length 55)		d1ghqc2 (Res69-128) \|L\|/\|K\|: 0.98 LCS len. 54		Z: 12.6 AR: 58 RMSD: 0.5A SI: 100%