Sandwich (2.60)

[Sandwich (2.60)]

|LCS| denotes the length of the longest common subsequence.
|Key Seq.| denotes the length of the key sequence.
(Upon length counting, residues without 5-tile code are omitted, such as two residues at both ends.)
In the images of superimposition, the C-terminal of the key sequence is connected with the N-terminal of a target sequecne
(because of the DaliLite output format).
Click the images to view larger image.
Click the filenames to view the corresponding PDB file
Click "LCS" to view the longest common subsequence

Key sequence	ASTRAL dataset search by ComSubstruct		Pairwise Comparison by DALI
	Frequency table of the ratio of seq. lengths Execution time	[Best result] \|LCS\|/\|Key Seq.\| value	Superimpos.	Z-score
		Length of the LCS		Num. of aligned residues
		[2nd best] \|LCS\|/\|Key Seq.\| value		RMSD of CAs
		Length of the LCS		Seq. identity

Neurophysin II, chain A (2.60.9.10)

Cytochrome C Oxidase, chain F (2.60.11.10)

1v54F00 (length 94)	\|LCS\|/\|Key Seq.\|: [0.9, 1.0] 1 [0.8, 0.9) 161 [0.7, 0.8) 24957 Exe. Time: 12.5 (sec.)	d1v54f_ \|L\|/\|K\|: 1.00 LCS len.: 94	(identical)	Z: - AR: 94 RMSD 0.0A SI: 100%
1v54F00 (length 94)		d1xe7a_ (Res11-121) \|L\|/\|K\|: 0.84 LCS len. 79	No significant similarities	Z: - AR: - RMSD: -A SI: -%

ATP Synthase; domain 1 (2.60.15.10)

1fs0E01 (length 84)	\|LCS\|/\|Key Seq.\|: [0.9, 1.0] 7 [0.8, 0.9) 10011 [0.7, 0.8) 19493 Exe. Time: 12.0 (sec.)	d1k4za_ (Res1370-1461) \|L\|/\|K\|: 0.92 LCS len.: 77	No significant similarities	Z: - AR: - RMSD -A SI: -%
1fs0E01 (length 84)		d1bu8a1 (Res339-435) \|L\|/\|K\|: 0.91 LCS len. 76		Z: 0.9 AR: 37 RMSD: 2.5A SI: 22%

1h8eH00 (length 85)	\|LCS\|/\|Key Seq.\|: [0.9, 1.0] 0 [0.8, 0.9) 10800 [0.7, 0.8) 20491 Exe. Time: 12.1 (sec.)	d1bpv__ (Res2-94) \|L\|/\|K\|: 0.89 LCS len.: 76		Z: 0.7 AR: 45 RMSD 4.2A SI: 11%
1h8eH00 (length 85)		d1e79h2 \|L\|/\|K\|: 0.89 LCS len. 76		Z: 20.2 AR: 86 RMSD: 0.3A SI: 100%