<2-th target 6-th window (trimmed)> RATIO : lcs/trimmed_seq_a = 0.762 (= 438/ 575), lcs/trimmed_seq_b = 0.693 (= 438/ 632) SEQ A : name = ./CATH/alpha/alpha_horseshoe/Leucine-rich_Repeat_Variant/1.25.10.10/1gw5B00/1gw5B00.pdb c1 SEQ A : residue = YFTTNKKGEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDNADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSETQELVQQVLSLATQDSDNPDLRDRGYIYWRLLSTDPVTAKEVVLSEKPLISEETDLIEPTLLDELICHIGSLASVYHKPPNA SEQ A : code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lcs = --B0--00QAAAAAAAA-----AAAAAAAAAAAAAAAB000-QA--AAAAAAA-----AAAAAAAAAAAAB----QAAAAA--AAAAA--B--0QAAAAAAAAAAAB-0-Q---B1AA-AAAAAAG0R-QAAAAAAAAAAAAAAB-00-0QAAAAAAAAAAAAAB0RGQAAAAAAAAAAAAAAAB0-00--00R-QAAAAAAAAAA-BG0Q-AAAAAAAAAAB-000-QAAAAAAAAAAAB--G-R--QAAAAAAAAA--B-G-R0-R00QAAAAAAAAA-AAA-----0QAAAAAAAAAAAAAA--0QAABQ---AAB0--QB-0QAAAAAAAAAAAAB-0--Q-BAAAAAAAAAABG--QAAAAAAAAAAAAAA-B0Q---AAAAAAAAA------QAAAAAAAAAAAAA-HA-0R--QA--AAAAABR--R--QAAAAAAAAAA----ABGQ--H-AAAAAAABR--G-QAAAAAAAAAAAAAAB0--QA--B1QAA-Q--AB-----QAAAAAAAAAA-----0-1AAAAB-R-------R--R-0-QAAAAAAAABQ--QAAABRG0QA- SEQ B : name = ./CATH/alpha/alpha_horseshoe/Leucine-rich_Repeat_Variant/1.25.10.10/1gw5B00/d1u6gc_.ent c1 SEQ B : residue = YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFLNHVEDGLKDHYDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIPEAEKSPLMSEFQSQISSNPEL SEQ B : code = ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------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--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SEQ B : lcs = ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------B-00-0--QAAAAAAAAAAAAAA----A--AAAA----A--AAAB-000-QAAAAAAAAAAAAAAA---------AAAAAB-QAAAAAAAAAAB0--Q----AAAAAAAAAAAB0QB-1-----A-AAAAAAA-G--0R-QAAAAAAAAAAAAAAB000QAA--AAAA-A-AAAAAA-B0RGQAAAAAAAAAAAAAAA-----B00000-RQA--AAAA-A-AAAABG---0QAAAAAAAAAA----B0----00Q--AAAAAAAAAAABGR-Q-AAAAAAAAABGR0--R00-QAAA--AAAAAAAAA---0QAAAAAAAA-A-AAA-A--A--0Q------AAB-QAAB0QB0QAAAAAAAAAAAA--B0-Q-B-AAA---AAA-AAAA-BGQ-----AAAAAAAAAAAAAAB0-----QAAAAAA---AAA----QAAAAAAAAAAAAAHA-0R--QAAAAAA--B---RR---QAAAAAAAAAA-A-- B-----G-Q-HAAAAAAA-B-RGQAAAAAAAAAAAAAA-B0QAB1QAA--------QABQAAAAAAAAAA--0--1AA--AA----------BRRR-0QAAAAAAAA-------B-Q---QAAA--B--RG0QA 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