<2-th target 1-th window (trimmed)> RATIO : lcs/trimmed_seq_a = 0.894 (= 406/ 454), lcs/trimmed_seq_b = 0.814 (= 406/ 499) SEQ A : name = ./CATH/alpha/alpha_horseshoe/Leucine-rich_Repeat_Variant/1.25.10.10/1ibrB00/1ibrB00.pdb c1 SEQ A : residue = ITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLI SEQ A : code = AAAAAAABGRGQAAAAAAAAAAAAAAAB0QAAAAAAAAAAABGQBG0QAAAAAAAAAAAAAG00RGQAAAAAAAAAAABG0QAAAAAAAAAAAABGRBGRG1R0QAAAAAAAAAAA1AABR1BQBHAAAAAAAABGQB00QAAAAAAAAAAAAAAB00OQAA1QB1QAAAAAAAAAABGQBG0GQAAAAAAAAAAAABQAABQAAABGQAAAAAAAAAAAAAAB0RGQAAAAAAAAAAAAAAAB0QAAAAAHGQB1QAAAAAAAAB0R8QAAAAAAAAAAAAAAAAAAAAAAAABGQB00000RR00RRRQAAABQAAAAAAAAAAABG00QBG0QG0R0QAAAAAAAAAAAAAABR1QAAAA1AAAAAB1QB0RGQAAAAAAAAAAAAABG000QAABQQAG001AAAAAAAAB0RGQAAAAAAAAAAAAAAAAAAABR000QAAAAAAAAAA SEQ A : lcs = AAAAAAAB-RGQAAAAAAAAAAAAAAAB0QAAAAAAAAAAABGQBG0QAAAAAAAAAAAA-G00RGQAAAAAAAAAAABG0QAAAAAAAAAAAABG-BGRG1-0QAAAAAAAAAA-1A-BR--QBHAAAAAAA-BGQB0-QAAAAAAAAAAAAAA-00-QAA-QB-QAAAAAAAAAAB-QBG-GQAAAAAAAAAAAABQAABQAAABGQAAAAAAAAAAAAAAB0RGQAAAAAAAAAAAAAAA-0QAA---H-QB1QAAAAAAAAB0R-QAAAAAAAAAAAAAAAAAAAAAAAAB---000--R-00RR-QAAABQAAAAAAAAAAAB-00QB-0QG0-0QAAAAAAAAAAAAA-B--QAAAA1AAAAAB1Q-0RGQAAAAAAAAAAAAA-G00-QAA---A----AAAAAAAAB0RGQAAAAAAAAAAAAAAAAAAAB-0--QAAAAAAAAAA SEQ B : name = ./CATH/alpha/alpha_horseshoe/Leucine-rich_Repeat_Variant/1.25.10.10/1ibrB00/d1qgra_.ent c1 SEQ B : residue = LITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELRKLKN SEQ B : code = QAAAAAAAB0RGQAAAAAAAAAAAAAAAB0QAAAAAAAAAAABGQBG0QAAAAAAAAAAAABG00RGQAAAAAAAAAAABG0QAAAAAAAAAAAABGQBGRG180QAAAAAAAAAAB1QABRQGQBHAAAAAAAHBGQBG0QAAAAAAAAAAAAAAA0G0QAABQABQAAAAAAAAAAB0QBG3GQAAAAAAAAAAAABQAABQAAABGQAAAAAAAAAAAAAAB0RGQAAAAAAAAAAAAAAAA0QAAHQB1QAB1QAAAAAAAAB0RGQAAAAAAAAAAAAAAAAAAAAAAAAAAAAAB0G00RG00RRQAAABQAAAAAAAAAAAAB00QB00QBG00QAAAAAAAAAAAAABB0QAAAAB1AAAAAB1Q30RGQAAAAAAAAAAAAARG0G0QAAAAAAAAAAAAAAAAAAB0RGQAAAAAAAAAAAAAAB00QAB1BGRGQA9AAAAAAAAAABG0QAAAAAAAAAAAAAAAAAHAAB1RR000000000QAQB-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SEQ B : lcs = -AAAAAAAB-RGQAAAAAAAAAAAAAAAB0QAAAAAAAAAAABGQBG0QAAAAAAAAAAAA-G00RGQAAAAAAAAAAABG0QAAAAAAAAAAAABG-BGRG1-0QAAAAAAAAAA-1-ABRQ--BHAAAAAAA-BGQB-0QAAAAAAAAAAAAAA-0-0QAA-Q-BQAAAAAAAAAAB-QBG-GQAAAAAAAAAAAABQAABQAAABGQAAAAAAAAAAAAAAB0RGQAAAAAAAAAAAAAAA-0QAAHQB1QA---AAAAAAA-B0R-QAAAAAAAAAAAAAAAAAAAAAAAA-----B0-00R-00RRQAAABQAAAAAAAAAAA-B00QB0-Q-G00QAAAAAAAAAAAAAB--QAAAA-1AAAAAB1Q-0RGQAAAAAAAAAAAAA-G0-0QAAAAAAAAAAA-------B0RGQAAAAAAAAAAAAAA-------------------AAAAAB-0QAAAAAAAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------