<1-th target 1-th window (trimmed)> RATIO : lcs/trimmed_seq_a = 0.833 (= 420/ 504), lcs/trimmed_seq_b = 0.758 (= 420/ 554) SEQ A : name = ./CATH/alpha/alpha_horseshoe/Leucine-rich_Repeat_Variant/1.25.10.10/1jdhA00/1jdhA00.pdb c1 SEQ A : residue = VNLIRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFR SEQ A : code = 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 SEQ A : lcs = -R0--QAAAAAAAABGRGQAAAAAAAAAAAAA-BGQAAAAAAABGQAAAAAAAAAAA----QAAAAAAAAAAAAA-BGQAAAAAAAA---AAAAAAA-B--GQAAAAAAAAAAAA--B0--RQAAAAAA---AAAAAAA-BG0-QAAAAAAAAAAAAAB0RGQAAAAAAAA--QAAAAAAAAB0---QAAAAAAAAAAAAAA---AAAAAAAAB-QAAAAAA--B0RGQAAAAAAAAAAAA--AAB--0---QAAAAAAAAAAB-R-QAAAAAAAAAAAAAB-R-QAAAAAAAABRQAAAAAAAAAAB0--QA-AAAAAAAAAAAB-0GQ--AAAAAAAA----QAAAAA--G0--0QAAAAAAAAAAAAA-BGQAAAAAAAABRQAAAAAAAAAAAA--B--0R-G-QAAAAAAAAAAAAAAA-GQAAAA-------QAAAAAAAB-RGQAAAAAAAAAAAAAAB-Q----AAAA--QAAAAAAA-B0RGQAAAAAAAAAAAA SEQ B : name = ./CATH/alpha/alpha_horseshoe/Leucine-rich_Repeat_Variant/1.25.10.10/1jdhA00/d1b3ua_.ent c1 SEQ B : residue = ADGDDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS SEQ B : code = BGQAGR0QAAAAAAAAABGRGQAAAAAAAABQAAAAABG0QAAAA00PAAAAB1RG000QAAAAAAAAAAABHQAAG00QB1QAAAAAAAAAAAB0RGQAAAAAAAAAAAAAAABG0QAAAAB1QAAAAAAAAB0RGQAAAAAAAAAHAA1AABG0QAAAAAAAAAAAAAAB0RGQAAAAAAAAAQAAAAABG0QAAAB01QAAAAAAAAB0RGQAAAAAAAAAAAAAAABG0QAAAA001QAAAAAAAB0RGQAAAAAAAABQAAAAAAB0QAAAAB1QAAAAAAAAB0RGQAAAAAAAABQAAAAAB00QBR0QAAAA001AAAAAAAAB0RGQAAAAAAAB1QAAAAAAB0QAAAAG01AAAAAAAAB0RGQAAAAAAAAGQAAAAAG00QAAAAA81AAAAAAAAB0RGQAAAAAAAAAAAAAAB0R0QAAB0QAAAAAAAAAAB0RGQAAAAAAAAAAAAAAAGB0QAAAA801QAAAAAAABGRGQAAAAAAAAAAAAAAB1R0QAAAA001QAAAAAAAB0RGQAAAAAAAAAAAABQABG0QAAAA------------------------------ SEQ B : lcs = -----R0QAAAAAAAA-BGRGQAAAAAAAA--AAAAABG-QAAAA---AAA-B--G---QAAAAAAAAAAA--QAA-------AAAAAAAAAAAB--GQAAAAAAAAAAAAAAABG-QAAAA---AAAAAAAAB0R-QAAAAAAAAA-AA-AABG0QAAAAAAAAAAAAA-B0RGQAAAAAAAA-QAAAAA----AAAB0-QAAAAAAA------AAAAAAAAAAAAAAAB----------QAAAAAA-B0RGQAAAAAAAA--AAAAAAB0QAAAA---AAAAAA--B-R-QAAAAAAAA--AAAAAB----R-Q-------AAAAAAAAB-R-QAAAAAAA---AAA---B0QAAAA---AAAAAAAAB0-GQAAAAAAAA-QAAAAAG00QAAAAA--AAAAAAAAB--GQ------AAAAAAAAB-R-QAA---AAAAAAAAAAB0RGQAAAAAAAAAAAAAAAG--QAAAA---QAAAAAAAB-RGQAAAAAAAAAAAAAAB---QAAAA---QAAAAAAAB0RGQAAAAAAAAAAAA-----------------------------------------