<2-th target 1-th window (trimmed)> RATIO : lcs/trimmed_seq_a = 0.755 (= 173/ 229), lcs/trimmed_seq_b = 0.689 (= 173/ 251) SEQ A : name = ./CATH/alpha/alpha_horseshoe/Leucine-rich_Repeat_Variant/1.25.10.10/1lrv000/1lrv000.pdb c1 SEQ A : residue = IGDCRVCSFRMSLLLTGRCTPGDACVAVESGRQIDRFFRNNPHLAVQYLADPFWERRAIAVRYSPVEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVEHASLEALRELDEPDPEVRLAIAG SEQ A : code = 00RQB0GQAAB0QAAGRR000RG00QBGRGQAAAAAAAAB0QAAAAABQB0RGQAAAAAAAB000QAAAQAAAB0RGQAAAAAAAB00RQ9BAAABQB0RGQAAAAAAABG001AAAAABQB0RGQAAAAAAAB000QAAAAABQB0RGQAAAAAAAB000QABQAABQB0RGQAAAAAAAA8G00QAAAAAAB0RGQAAAAAAAB000QAAAABGR0RGQAAAAAAAB SEQ A : lcs = 00R---GQAA---AA---000--00---R-QAAAAAAAAB0QAAAAAB--0RGQAAAAA--B00-QAAA-AAAB--GQAAAAAAAB00RQ--AAA---0-GQAAAAAAA-----AAAAAB--0RGQAAAAAA-B000QAAAAABQB0--QAAAAAAA-----A--AABQB0R-QAAAAAAA--G00QAAAAAAB-RGQAAAAAA-B000QAAAAB--0--QAAAAAAA- SEQ B : name = ./CATH/alpha/alpha_horseshoe/Leucine-rich_Repeat_Variant/1.25.10.10/1lrv000/d1dm5a_.ent c1 SEQ B : residue = QGTVKPHASFNSREDAETLRKAMKGIGTDEKSITHILATRSNAQRQQIKTDYTTLFGKHLEDELKSELSGNYEAAALALLRKPDEFLAEQLHAAMKGLGTDKNALIDILCTQSNAQIHAIKAAFKLLYKEDLEKEIISETSGNFQRLLVSMLQGGRKEDEPVNAAHAAEDAAAIYQAGEGQIGTDESRFNAVLATRSYPQLHQIFHEYSKISNKTILQAIENEFSGDIKNGLLAIVKSVENRFAYFAERLHHAMKGLGTSDKTLIRILVSRSEIDLANIKETFQAMYGKSLYEFIADDCSGDYKDLLLQIT SEQ B : code = 00RG0000R00QAAAAAAAAAA0G0000RQAAAAAAAABG0QAAAAAAAAAAAAB0RG0QAAAAAGBG00QAAAAAAAABG0QAAAAAAAAAAB00G300RQAAAAA01A0G0QAAAAAAAAAAAAB0RG0QAAAAAAB000QAAAAAAAAABRR0RQB0000QAAAAAAAAAAAAB0QB0R00RQAAAAAAAG000QAAAAAAAAAAAABGRG0QAAAAAAB000QAAAAAAAAAAAAB0QAAAAAAAAA------------------------------------------------------------ SEQ B : lcs = 00RG-------Q------AAAA0-0000RQAAAAAAAAB-0QAAAAA-------B0RG-QAAAAA-B-00QAAAAAA--BG-QAAAAAAA---B----00RQAAA--0---G-QAAAAAAAAAAAAB0RG-QAAAAAAB000QAAAAA----B----QB0---QAAAAAAAAAA--B-QB0R---QAAAAAAAG00-Q------AAAAAAB-RG-QAAAAAAB000QAAAA--------B0QAAAAAAA--------------------------------------------------------------