<1-th target 5-th window (trimmed)> RATIO : lcs/trimmed_seq_a = 0.795 (= 263/ 331), lcs/trimmed_seq_b = 0.723 (= 263/ 364) SEQ A : name = ./CATH/alpha/alpha_horseshoe/Leucine-rich_Repeat_Variant/1.25.10.20/1lshA02/1lshA02.pdb c1 SEQ A : residue = ITKMSSLFVTKGKNLESEIHTVLKHLVENNQLSVHEDAPAKFLRLTAFLRNVDAGVLQSIWHKLHQQKDYRRWILDAVPAMATSEALLFLKRTLASEQLTSAEATQIVASTLSNQQATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQPNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQEIVLPIFLNVAIKSELRIRSCIVFFESKPSVALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPEFRDVAAACSVAIKMLGSKLDR SEQ A : code = B1BG0R000OGRGR1AAAAAAAAAAAAAHJ0R000QBQAAAAAAAAAAAABG0QAAAAAAAAB1QBGQIAAAAAAAAIAABRGQAAAAAAAAAAABRRG0QAAAAB1AAAHAAB0R00QAAAAAAAAAABGQAAABG1AAAAAAAAAAAAAAAAABQBGR000QAABAAAAAAAAAAAABR0QAAAAAAAAAAAABR0QAAQAAAAABG0RR0R0RROG0QAAAAAAAAABIAAAB00QAAAAAG9AAAABGQBG0QAAAAAAAAAAAAB300QAAAAAAAAAAAB0RGQAAAAAAAAAAAAAAB0RGQABQAAAAAAAAAAAB00RQAAB SEQ A : lcs = B-------0--RG--AAAAAAAAAAAAA--------BQAAAAAAAAAAAAB-0QAAAAAAAA--QBGQ-AAAAAAAA-AABRGQAAAAAAAAAAAB--G0QAAAA-1AAA-AAB0R--QAAAAAAAAAAB-QAAAB-1AAAAAAAAAAAAAAAA-BQB--00-Q--BAAAAAAAAAAAAB-0QAAAAAAAAAAAAB-0QAA-AAAAAB------0R--G-QAAAAAAAAA--AAA-00QAAAAA--AAAAB----0QAAAAAAAAAAAAB-00QAAAAAAAAAAAB0RGQAAAAAAAAAAAAAA-----ABQAAAAAAAAAAAB--RQAA- SEQ B : name = ./CATH/alpha/alpha_horseshoe/Leucine-rich_Repeat_Variant/1.25.10.20/1lshA02/d1b3ua_.ent c1 SEQ B : residue = ADGDDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS SEQ B : code = ------------------------------------------------------------------------------------------------------------------------------------AB0RGQAAAAAAAAAHAA1AABG0QAAAAAAAAAAAAAAB0RGQAAAAAAAAAQAAAAABG0QAAAB01QAAAAAAAAB0RGQAAAAAAAAAAAAAAABG0QAAAA001QAAAAAAAB0RGQAAAAAAAABQAAAAAAB0QAAAAB1QAAAAAAAAB0RGQAAAAAAAABQAAAAAB00QBR0QAAAA001AAAAAAAAB0RGQAAAAAAAB1QAAAAAAB0QAAAAG01AAAAAAAAB0RGQAAAAAAAAGQAAAAAG00QAAAAA81AAAAAAAAB0RGQAAAAAAAAAAAAAAB0R0QAAB0QAAAAAAAAAAB0RGQAAAAAAAAAAAAAAAGB0QAAAA801QAAAAAAABGRGQAAAA---------------------------------------------------------------------------------------- SEQ B : lcs = -------------------------------------------------------------------------------------------------------------------------------------B0RG-AAAAAAAAA-AA-AAB--QAAAAAAAAAAAA--B0--QAAAAAAAA-Q-----BG-QAA-----AAAAAAAAB-RGQ----AAAAAAAAAAABG0QAAAA--1-AAAAA--B0R-QAAAAAAAA--AA----B-QAAA-B1-AAAAAAAA-----AAAAAAAABQ-----B00QB---AAAA---AAAAAAAAB0--QAAAAAAA---AAAAA-B0Q--------AAAAAAAB0RGQAAAAAAAA--AAAA--00Q----A--AAAAAAAAB0--QAAAAAAAAAAAA--B0-0QAA---AAAAAAAAA-B0RGQAAAAAAAAAAAAAAA-B-QAAAA----AAAAAAAB-R-QAA------------------------------------------------------------------------------------------