<1-th target 1-th window (trimmed)> RATIO : lcs/trimmed_seq_a = 0.788 (= 264/ 335), lcs/trimmed_seq_b = 0.717 (= 264/ 368) SEQ A : name = ./CATH/alpha/alpha_horseshoe/Leucine-rich_Repeat_Variant/1.25.10.10/1m8zA00/1m8zA00.pdb c1 SEQ A : residue = SRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKL SEQ A : code = 0QAAAAAABRRGQG00QAAB0QBQAAAABGQAAAAAAAAAAB000QAAAAAAAAA1QABQAAAABGR1AAAAAAAAAG000QAAAAAAAAABGQBQAAAABGRAAAAAAAAAAB000QAAAAAAAAAB0QB2AAAABGR2AAAAAAAAAB000QAABQAAAAAB0QBQAAAABGQAAAAAAAAAA8000QAAAAAAAAAAAA1QAAAABGRAAAAAAAAAAB000QAAAAAAAAABGQBQAAAABGR1AAAAAAAAAB000QAAAAAAAAAAABG000R00QAAAAABGR1AAAAAAAAAB000QAAAAAAAAAHAABQAAAABGQAAAAAAHAA SEQ A : lcs = --AAAAAAB--G-G--QAA-----AAAABGQAAAAAAAAAAB000QAAAAAAAAA--ABQAAAAB-R-AAAAAAAA-G000QAAAAAAAAA-----AAAA---AAAAAAAAAAB---QAAAAAAAA-B0Q--AAAA----AAAAAAAAAB000QAABQAAAAAB-Q--AAAA---AAAAAAAAAA-0--QAAAAAAAAAAAA--AAAAB-RAAAAAAAAAAB0--QAAAAAAAA-B-Q--AAAAB-R-AAAAAAAAAB0--QAAAAAAAAAAA-G000---QAAAAA----AAAAAAAAAB0--QAAAAAAAAA-AA--AAAABGQAAAAAA-AA SEQ B : name = ./CATH/alpha/alpha_horseshoe/Leucine-rich_Repeat_Variant/1.25.10.10/1m8zA00/d1ee4a_.ent c1 SEQ B : residue = LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIET SEQ B : code = AAAAAAAABGRGQAAAAAAAAAAAAABBGRGR0RQAAAAABRRQAAAAAAB0QB00QAAAAAAAAAAAAAABG0QAAAAAAAABRQAAAAAAAAG000QAAAAAAAAAAAAAAAB0QAAAAAAAABRQAAAAAAAABBR0QAAAAAAAAAAAAABG0QJO00RQBHAAABQAAAAAAABGRGQAAAAAAAAAAAAAABG0QAAAAAAAABRQAAAAAAAAB0RGQAAAAAAAAAAAAAABG0QAAAAAAAABRQAAAAAAAAB0RGQAAAAAAAAAAAAAABG0QAAAAAAAABRQAAAAAAAAG000QAAAAAAAAAAAAAAAAAAB0QAAAAAAAABOQAAAAAAAAB0RGQAAAAAAAAAAAAAA--------------------------------------------------- SEQ B : lcs = --AAAAAABG-GQAAAAAA--------BG-----QAAAA-----AAAAAAB0--00QAAAAAAAAAA----B--Q----AAAABR-AAAAAAAAG000QAAAAAAAAAAAAAAA---AAAAAAAAB-QAAAAAAAAB--0QAAAAAAAAAAAAAB-0---00-Q--AA-BQAAAAA--B---QAAAAAAAAAAAAAA--0QAAAAAAAA---AAAAAAAAB-R--AAAAAAAAAA----B-0QAAAAAAAAB-QAAAA----B-R-------AAAAAAAAAB-0Q-----AAA---AAAAAAAAG000QAAAAAAAAAAAAAA----B0QAAAAAAAA---AAAAAAA-B--GQAAAAAAAA---------------------------------------------------------