<1-th target 3-th window (trimmed)> RATIO : lcs/trimmed_seq_a = 0.875 (= 126/ 144), lcs/trimmed_seq_b = 0.797 (= 126/ 158) SEQ A : name = ./CATH/alpha/alpha_horseshoe/Leucine-rich_Repeat_Variant/1.25.10.30/1n4kA02/1n4kA02.pdb c1 SEQ A : residue = PAEVRDLDFANDASKVLGSIAGKLEKGTITQNERRSVTKLLEDLVYFVTGGTNSGQDVLEVVFSKPNRERQKLMREQNILKQIFKLLQAPFTHAPFRHICRLCYRVLRHSQQDYRKNQEYIAKQFGFMQKQIGYDVLAEDTITA SEQ A : code = QAAAAAAAAAAAAAAAAAAAAAAAAB0000QAAAAAAAAAAAAAAAAABRRR0RRR0QAAAAB000RQAAAAAAAABRQAAAAAAAAAAABO3QAAAAAAAAAAAAAAAAB0RGQAAAAAAAAAAAAAAAAB0QBQAAAAAAAA SEQ A : lcs = -AAAAAAAAAAAAAAAAAAAAAAAAB0000QAAAAAAAAAAAAAAAAABRR-0RR--QAAAA------AAAAAAAA---AAAAAAAAAAA----AAAAAAAAAAAAAAAAB-RGQAAAAAAAAAAAAAAAAB0QBQAAAAAAAA SEQ B : name = ./CATH/alpha/alpha_horseshoe/Leucine-rich_Repeat_Variant/1.25.10.30/1n4kA02/d1f5na1.ent c1 SEQ B : residue = IQVNGPRLESLVLTYVNAISSGDLPCMENAVLALAQIENSAAVQKAIAHYEQQMGQKVQLPTESLQELLDLHRDSEREAIEVFIRSSFKDVDHLFQKELAAQLEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQT SEQ B : code = ----------------------------AAAAAAAAAAAAAAAAAAAAAAAAAAAB0000O0R0QAAAAAAAAAAAAAAAAAAAABG0RR0RRQAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAB01AAAAAAAABRQARG0RQAAAAAAAAAAAAAAAABG0RR0QBQAAAAAAAAAABQAA-------------------------------------------------------------------------------------------------------------- SEQ B : lcs = -------------------------------AAAAAAAAAAAAAAAAAAAAAAAAB0000----QAAAAAAAAAAAAAAAAA---B--RR0RRQAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA---AAAAAA--BR---G--QAAAAAAAAAAAAAAAAB-0---QBQAAAAAAAA--------------------------------------------------------------------------------------------------------------------