<2-th target 1-th window (trimmed)> RATIO : lcs/trimmed_seq_a = 0.869 (= 53/ 61), lcs/trimmed_seq_b = 0.791 (= 53/ 67) SEQ A : name = ./CATH/alpha/orthogonal_bundle/Helicase/1.10.8.50/2gybM01/2gybM01.pdb c1 SEQ A : residue = IAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEVAKFV SEQ A : code = 00R000R0RG0QGQAAABGQG00QAAAAAAAAAB000QBG0QABG0QAAAAAAAAAAABG0 SEQ A : lcs = 00R000-0RG0Q--AAABGQG0-QAAAAAAAAAB00-QBG0QAB-0QAAAAAAAAAAA--0 SEQ B : name = ./CATH/alpha/orthogonal_bundle/Helicase/1.10.8.50/2gybM01/d1i94m_.ent c11/2gybM0 SEQ B : residue = IAGVEIPRNKRVDVALTYIYGIGKARAKEALEKTGINPATRVKDLTEAEVVRLREYVENTWKLEGELRAEVAANIKRLMDIGCYRGLRH SEQ B : code = 00RR0000RG0QAAHAABGQBG0QAAAAAAAAAB00RQBG0QAB00QAAAAAAAA1AAA00O00QAA---------------------- SEQ B : lcs = 00R-0000RG0QAA-A-BGQ-G0QAAAAAAAAAB00-QBG0QAB0-QAAAAAAAA-AAA0-----------------------------