<1-th target 2-th window (trimmed)> RATIO : lcs/trimmed_seq_a = 0.793 (= 153/ 193), lcs/trimmed_seq_b = 0.722 (= 153/ 212) SEQ A : name = ./CATH/alpha_beta/2Layer_Sandwich/Oxidase/3.30.9.10/1an9A02/1an9A02.pdb c1 SEQ A : residue = PVSGYNLFREAVPDPYWKDMVLGFRKLTPRELDMFPDYRYGWFNTSLILEGRKYLQWLTERLTERGVKFFLRKVESFEEVARGGADVIINCTGVWAGVLQPDPLLQPGRGQIIKVDAPWLKNFIITHDLERGIYNSPYIIPGLQAVTLGGTFQVGNWNEINNIQDHNTIWEGCCRLEPTLKDAKIVGEYTGFR SEQ A : code = 00000000R000000QBQABG0000000QAAAABGQBGR00000000000QAAAAAAAAAAAAABR00000000R0QAAAAABR0R0000RR0QBQAAB000QBG00R000000000QBGRG000000QAB00RRG000000R00000000000R0R0RG00QAAAAAAAAAAAAB0QAAABG0000000000 SEQ A : lcs = 00000000-000000------0000000QAAAAB-QBGR00000000000QAAAAAAAAAAAA-BR0000----R0QAAAAABR0-0000RR0------000QBG00-000000000QB---000000---00RRG000000R00000000000-0-0----QAAAAAAAAAAAA---A--B-000000000- SEQ B : name = ./CATH/alpha_beta/2Layer_Sandwich/Oxidase/3.30.9.10/1an9A02/d1q8ia1.ent c1 SEQ B : residue = AGFILTRHWRDTPQGTEVSFWLATDNGPLQVTLAPQESVAFIPADQVPRAQHILQGEQGFRLTPLALKDFHRQPVYGLYCRAHRQLMNYEKRLREGGVTVYEADVRPPERYLMERFITSPVWVEGDMHNGTIVNARLKPHPDYRPPLKWVSIDIETTRHGELYCIGLEGCGQRIVYMLGPENGDASSLDFELEYVASRPQLLEKLNAWFANYDPDVIIGWNVVQFDLRMLQKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQELLMDEIDRRFAEDKPALATYNLKDCELVTQIFHKTEIMPFLLERATVNGLPVDRHGGSVAAFGHLYFPRMHRAGYV SEQ B : code = -------------------00000QB00000000000000000QABQAAAAAABQBG1RG00000RG00QBR00000000RGQAAAAAAAAAAAABR0000RQBG0QAAAAAAABR000000000000RRG00R00000RQBG00000000000000QB000R000001RRG0000001R0000RQB0R00000000QAAAAAAAAAAAAAB00R00000RQHR00AAAAA--------------------------------------------------------------------------------------------------------------------------------------------- SEQ B : lcs = --------------------0000--00000000000000000QA--AAA---BQBG-R-----0--00---00000000--QAAAAAAAAAAAABR0000R---0QAAAAA--BR-------00000RR-00-00----QBG00000000000---QB000-00000-RRG000000-R0000---0-00000000QAAAAAAAAAAAAAB00-00000----00--------------------------------------------------------------------------------------------------------------------------------------------------