<1-th target 1-th window (trimmed)> RATIO : lcs/trimmed_seq_a = 1.000 (= 135/ 135), lcs/trimmed_seq_b = 0.912 (= 135/ 148) SEQ A : name = ./CATH/alpha_beta/Roll/HIV/3.10.10.10/1har001/1har001.pdb c1 SEQ A : residue = SPIETVPVKLKPGMDGPKVAQWPLTAAKIAALVAICTEMEKEGKISKIGPENPYNTPVFAIWAKLVDFRELNKRTQDFWEVKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSP SEQ A : code = 0R0000000000R000030000000QAAAAAAAAAAAAAAABRR00000QBGRG000000ORG0000RQAAAABG000O003000000RQAAAABG000QAAAAAB000O000RRG0R000000RG000R0QBQA SEQ A : lcs = 0R0000000000R000030000000QAAAAAAAAAAAAAAABRR00000QBGRG000000ORG0000RQAAAABG000O003000000RQAAAABG000QAAAAAB000O000RRG0R000000RG000R0QBQA SEQ B : name = ./CATH/alpha_beta/Roll/HIV/3.10.10.10/1har001/d1har__.ent c1 SEQ B : residue = SPIETVPVKLKPGMDGPKVAQWPLTAAKIAALVAICTEMEKEGKISKIGPENPYNTPVFAIWAKLVDFRELNKRTQDFWEVKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILAPFKAANPDIVIYQYMDDLYVGSDLAIGAHRTKIEELRQHLLRWGL SEQ B : code = 0R0000000000R000030000000QAAAAAAAAAAAAAAABRR00000QBGRG000000ORG0000RQAAAABG000O003000000RQAAAABG000QAAAAAB000O000RRG0R000000RG000R0QBQAAAAAAAAAAAAQA-------------------------------------------- SEQ B : lcs = 0R0000000000R000030000000QAAAAAAAAAAAAAAABRR00000QBGRG000000ORG0000RQAAAABG000O003000000RQAAAABG000QAAAAAB000O000RRG0R000000RG000R0QBQA---------------------------------------------------------