<2-th target 1-th window (trimmed)> RATIO : lcs/trimmed_seq_a = 0.874 (= 118/ 135), lcs/trimmed_seq_b = 0.797 (= 118/ 148) SEQ A : name = ./CATH/alpha_beta/Roll/HIV/3.10.10.10/1har001/1har001.pdb c1 SEQ A : residue = SPIETVPVKLKPGMDGPKVAQWPLTAAKIAALVAICTEMEKEGKISKIGPENPYNTPVFAIWAKLVDFRELNKRTQDFWEVKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSP SEQ A : code = 0R0000000000R000030000000QAAAAAAAAAAAAAAABRR00000QBGRG000000ORG0000RQAAAABG000O003000000RQAAAABG000QAAAAAB000O000RRG0R000000RG000R0QBQA SEQ A : lcs = ---000000000R0000-0000000QAAAAAAAAAAAAAAABRR00000QBGRG000000-RG0000-QAAAABG000-00-000000RQAA--BG000QAAAAAB000-000R-G0R000000R-000R0---- SEQ B : name = ./CATH/alpha_beta/Roll/HIV/3.10.10.10/1har001/d1vrta2.ent c1 SEQ B : residue = ETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWY SEQ B : code = 000000000RG00000000000QAAAAAAAAAAAAAAABRR00000QBGRG0000000000RG0G0000000QAAAABG000000RRG000QABG000R00000000RQAABG000QAAAAAB000000RG0RG0R00000R0000R0---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SEQ B : lcs = 000000000R-00000000000QAAAAAAAAAAAAAAABRR00000QBGRG000000----RG0-000----QAAA----------------ABG000-00000000RQAABG000QAAAAAB000000RG0R-0-00000R000-R0----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------