<1-th target 3-th window (trimmed)> RATIO : lcs/trimmed_seq_a = 1.000 (= 132/ 132), lcs/trimmed_seq_b = 0.910 (= 132/ 145) SEQ A : name = ./CATH/alpha_beta/Roll/HIV/3.10.10.10/1mml001/1mml001.pdb c1 SEQ A : residue = ATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGISGQLTW SEQ A : code = QG000000000000QAAAAAAAAAAAAAAABRR000000RG000000R0000RG0000000RQAAAABG00000RG00QAAAAAB00QAG0G0000000RQAABG000QAAAAAG000000QABRG000000 SEQ A : lcs = QG000000000000QAAAAAAAAAAAAAAABRR000000RG000000R0000RG0000000RQAAAABG00000RG00QAAAAAB00QAG0G0000000RQAABG000QAAAAAG000000QABRG000000 SEQ B : name = ./CATH/alpha_beta/Roll/HIV/3.10.10.10/1mml001/d1mml__.ent c1 SEQ B : residue = LSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGISGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGNLGYRASAKKAQICQKQVKYLGYL SEQ B : code = --------------------------00QG000000000000QAAAAAAAAAAAAAAABRR000000RG000000R0000RG0000000RQAAAABG00000RG00QAAAAAB00QAG0G0000000RQAABG000QAAAAAG000000QABRG000000RG001R0QBQA---------------------------------------------------------------------------- SEQ B : lcs = ----------------------------QG000000000000QAAAAAAAAAAAAAAABRR000000RG000000R0000RG0000000RQAAAABG00000RG00QAAAAAB00QAG0G0000000RQAABG000QAAAAAG000000QABRG000000---------------------------------------------------------------------------------------