<2-th target 1-th window (trimmed)> RATIO : lcs/trimmed_seq_a = 0.871 (= 115/ 132), lcs/trimmed_seq_b = 0.793 (= 115/ 145) SEQ A : name = ./CATH/alpha_beta/Roll/HIV/3.10.10.10/1mml001/1mml001.pdb c1 SEQ A : residue = ATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGISGQLTW SEQ A : code = QG000000000000QAAAAAAAAAAAAAAABRR000000RG000000R0000RG0000000RQAAAABG00000RG00QAAAAAB00QAG0G0000000RQAABG000QAAAAAG000000QABRG000000 SEQ A : lcs = --000000000000QAAAAAAAAAAAAAAABRR00000-RG000000-0000RG0000000-QAAAABG00000RG00QA----B00---0-0000000RQAABG000QAAAAA-000000---RG000000 SEQ B : name = ./CATH/alpha_beta/Roll/HIV/3.10.10.10/1mml001/d1vrta2.ent c1 SEQ B : residue = ETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWY SEQ B : code = 000000000RG00000000000QAAAAAAAAAAAAAAABRR00000QBGRG0000000000RG0G0000000QAAAABG000000RRG000QABG000R00000000RQAABG000QAAAAAB000000RG0RG0R00000R000------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SEQ B : lcs = --------0--00000000000QAAAAAAAAAAAAAAABRR00000---RG0000000000RG0-000000-QAAAABG00000-R-G00-QAB-000-0000000-RQAABG000QAAAAA-000000RG0--0-0000------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------