<1-th target 7-th window (trimmed)> RATIO : lcs/trimmed_seq_a = 0.729 (= 261/ 358), lcs/trimmed_seq_b = 0.664 (= 261/ 393) SEQ A : name = ./CATH/alpha_beta/2Layer_Sandwich/Oxidase/3.30.9.10/1pn0A02/1pn0A02.pdb c1 SEQ A : residue = IALYNPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIERRILDSIAEISDTRIKVERPLIPEKMEIDSSKAEDPEAYPVTMTLRYMSEDESTPLQFGHKTENGLFRSNLQTQEEEDANYRLPEGKEAGEIETVHCKYVIGCDGGHSWVRRTLGFEMIGEQTDYIWGVLDAVPASNFPDIRSRCAIHSAESGSIMIIPRENNLVRFYVQLQATKFTPEVVIANAKKIFHPYTFDVQQLDWFTAYHIGQRVTEKFSKDERVFIAGDACHTHSPKAGQGMNTSMMDTYNLGWKLGLVLTGRAKRDILKTYEEERQPFAQALIDFDHQFSRLFSGRPAKDVADEMGVSMDVFKEAFVKGNE SEQ A : code = 0000000QBR0000R0000R000RR0RG000000QAAAAAAAAAAAAAABRRRG0000OG00R00000QABQBGQBGRRG00000000QABG000QG0000000RG00QAAAAAAAABG00000R000R0000000R0000R00QB0QAAAABR00R00000RG00000R0R000R0QBQBG000000R10000000000RR000000000O3000QAAAAAAAAAAB0OG0000R000000000000000RGR00RRG00000QA00000RQBRPGQAAAAAAAAAAAAAAAAAABRR00QAAAAAAAB01AAAAAAAAAAAAAAAAAABG000R0QBRQBG00QAAAAAAAAAAAA SEQ A : lcs = ---0000Q------R0000R0------G000000QAAAAAAAAAAAAAABR--G000--G00-00000QABQ-GQBG---0000------B------0000000--00Q--------B-00000-000-00000--R0000-00--0-------00R00000RG00000-0-000R0QB---000000R-0000000000RR000000000--000QAA--------B----000-000000000000000R--0-R-G00000Q-00000RQBR-GQAAAAAAAAAAAAAAAAAABRR00QAAAAAAAB0-AAAAAAAAAAAAAAAAAABG0--R---R-BG--QAAAAAAAAAAAA SEQ B : name = ./CATH/alpha_beta/2Layer_Sandwich/Oxidase/3.30.9.10/1pn0A02/d1jmu.1.ent c1 SEQ B : residue = NVTGDGNVFKPSAETSSTAVPSLSLSPGMLNPGGVPWIAIGDETSVTSPGALRRMTSKDIDEPLVVVTEHAIANFTKAEMALEFNREFLDKLRVLSVSPKYSDLLTYVDCYVGVSARQALNNFQKQVPVITPTRQTMYVDSIQAALKALEKWEIDLRVAQTLLPTNVPIGEVSCPMQSVVKLLDDQLPDDSLIRRYPKEAAVALAKRNGGIQWMDVSEGTVMNEAVNAVAASALAPSASAPPLEEKSKLTEQAMDLVTAAEPEIIASLVPVPAPVFAIPPKPADYNVRTLKIDEATWLRMIPKTMGTLFQIQVTDNTGTNWHFNLRGGTRVVNLDQIAPMRFVLDLGGKSYKETSWDPNGKKVGFIVFQSKIPFELWTAASQIGQATVVNYVQLYAEDSSFTAQSIIATTSLAYNYEPEQLNKTDPEMNYYLLATFIDSAAITPTNMTQPDVWDALLTMSPLSAGEVTVKGAVVSEVVPAELIGSYTPESLNASLPNDAARCMIDRASKIAEAIKIDDDAGPDEYSPNSVPIQGQLAISQLETGYGVRIFNPKGILSKIASRAMQAFIGDPSTIITQAAPVLSDKNNWIALAQGVKTSLRTKSLSAGVKTAVSKLSSSESIQNWTQGFLDKVSTHFP SEQ B : code = ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G0000Q83R0000R0QGQAAAAABG00R0000QAAAAAAAAAAAAAAAAB0QAAAB0RG000QAABG00000000RQABG0QAHGQBG00001RBR000000000QBR000000000R0000RRGRR00000000R0RG0R00R0G0RGR0000000000RG0QAB000QAAR0000RR0000000000RG0RG0000000000000QAABR010QBG0000000000RG000QAB000R0RQBG000000RGQBG000R0G00R00RQAABGRGG0QAAAABG0QB0QAAAAAAAAAAAAAAAAB0GR000R000QAAAAAAAAAAAAABG0000000000QAAAAAAAAAAAAAAAB0QAAABG0RR01ABGQAAAAAAAAAAAAAAABG0---------------------------------- SEQ B : lcs = -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------0000Q--R0000R0---------G00-0000QAAAAAAAAAAAAAA--B-------RG000----G0000000--QAB--Q--GQBG0000--B-000000000QB-000000000-0000R----00000000-0R-0-00-0-0RG-000000000-R-0Q-B00-----0000R-0000000000R--R-000000000000-QAAB-0-0---0000000000--000---000R0R--G00000---Q--000-0-0-R---Q--B-RG--QAA---------AAAAAAAAAAAAAAAAB--R---R00-QAAAAAAA------B----------0-AAAAAAAAAAAAAAA---AAABG0RR---BGQAAAAAAAAAAAA----------------------------------------