• Backbone structures are obtained using ProteinViewer, where N-terminal is colored red and C-terminal blue.
• Click the images to view larger image.
• Click PDB IDs to view the corresponding PDB file
• See the bottom for brief explanation of the DSSP codes and the 5-tile codes. 
• The "site" row indicates active site residues:
          "*" denotes active sites registered in SwissProt/UniProt.
          "+" denotes active sites registered in PROSITE/UniProt.
           Residues registered in both of them are denoted by "*."
• In the images of superimposition, the C-terminal of the first sequence is connected with the N-terminal of the second sequecne
  (because of the DaliLite output format).
  

(1) Cluster 1

				Z-Score: 20.2 AR: 152 RMSD: 2.3A SI: 97%
1a1q A (len 183)	1jxp A (len 177)		DaliLite result

site                                                                  *                          *            1a1q PITAYSQQTRGLLGCIITSL         TGRDKNQVEGEVQVVSTATQSFLATCVN GVCWTVYHGAGSK TLAGPKGPITQM YTNV DQDLVGWQAPPGARS code --000000RG0G0000000Q         R10R1R0000RG00000QG000000000 RG0000PGRGRGR 0000QB000000 000Q BRRG0000000R000 LCS     00000R        00Q         R 0R  0000 G00000  000000000 RG0000      R 0000  000000 000Q B RG000 000R000 code  --00000R        00QAAAAAAAABRG0RG 0000OG00000R 000000000RRG0000QAB00 R00000R 000000R000QAB RG0003000R000 1jxp  ITAYSQQT        RGLLGCIITSLTGRDKN QVEGEVQVVSTA TQSFLATCVNGVCWTVYHGAG SKTLAGP KGPITQMYTNVDQ DLVGWQAPPGARS site                                                                  *                          * site    * *                                           *     *   * 1a1q LTPCTCGSSDLYLVTRHADVIPVRRRGDS  RGSL  LSPRPVSYLKGSSGGPLLCPSGHAVGIF RAAVCTRGVA K AVDFVPVESMETTMRSPVF code 00001RR0RG00000QBR000000000R0  G000  R0000QAABGRR0R00000QBR00R000 000000RRG0 0 000000QAAB0QABG00-- LCS  0000 RR0RG00000QBR0 00000  R0  G000  R00  QAAB RR R 0000QBR00 000 000 00R  0 0 000000QAA   A code 0000RRR0RG00000QBR0R00000  R0RRG000Q8R00  QAAB0RR1RG0000QBR00 000R000R00R  0G0R000000QAAAA A-- 1jxp LTPCTCGSSDLYLVTRHADVIPVRR  RGDSRGSLLSPRP  VSYLKGSSGGPLLCPSGHA VGIFRAAVCTR  GVAKAVDFVPVESME TTM site    * *                                           *     *   * *RATIO :  lcs/trimmed_seq_a = 0.749 (=  134/  179), lcs/trimmed_seq_b = 0.775 (=  134/  173)

Structural alignment by ComSubstruct + manual inspection

DSSP llllllllllllllllllllllllLLLLLLLEEEEEELLEEEEEEELLLEEEEELLLLLLllLEELL..EELLLLEELLLLLEEEEELLLLLLL 1a1q pitaysqqtrgllgciitsltgrdKNQVEGEVQVVSTATQSFLATCVNGVCWTVYHGAGSktLAGPK..GPITQMYTNVDQDLVGWQAPPGARS                              ||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||| 1jxp .itaysqqtrgllgciitsltgrdKNQVEGEVQVVSTATQSFLATCVNGVCWTVYHGAGS..KTLAGpkGPITQMYTNVDQDLVGWQAPPGARS DSSP .llllllllllhhhhhhhhhllllLLLLLLLEEEEELLLLEEEEEEELLEEEEEHHHHLL..LLEEEllEEELLLEEELLLLEEEEELLLLLLL DSSP LLLLLLLLLEEEELLLLLLLEEEEEEELLEEEEEEEELHHHHLLLLLLEEELLLLLEEEEEEEEELLLLLEEEEEEEELLLLLLLLleell 1a1q LTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPVSYLKGSSGGPLLCPSGHAVGIFRAAVCTRGVAKAVDFVPVESMETTMrspvf      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1jxp LTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPVSYLKGSSGGPLLCPSGHAVGIFRAAVCTRGVAKAVDFVPVESMETTM..... DSSP LLLLLLLLLEEEEELLLLLEEEEEELLLLEEEEEEEEEHHHHLLLLLLEEEELLLEEEEEEEEEEEELLEEEEEEEEEHHHHHLLL..... *Z-score 20.2  AR 152  RMSD 2.3A  SI 97%

Structural alignment by DaliLite

(2) Cluster 2

				Z-Score: 38.6 AR: 326 RMSD: 6.7A SI: 100%
1a8e A (len 329)	1bp5 C (len 334)		DaliLite result

site                                                              * 1a8e DKTVRWCAVSEHEATKCQSFRDHMKSVIPSDGPSVACVKKASYLDCIRAIAANEADAVTLDAGLVYDAYLAPNNLKPVVAEFYGSKEDPQTF code --000000001AAAAAAAAAAAAAAB0G0QBG00000000R0QAAAAAAAABRR0000000QAAAAAABG0OGR00000000000QB000RG LCS     00000 0 AAAAAAAAAAAAAAB0G0QBG00000000R0QAAAAAAAABRR0000000QAAAAAABG0  R000000000 0Q  00R code  --00000R0QAAAAAAAAAAAAAAB0G0QBG00000000R0QAAAAAAAABRR0000000QAAAAAABG0PBR000000000R0QGR00R0 1bp5  KTVRWCAVSEHEATKCQSFRDHMKSVIPSDGPSVACVKKASYLDCIRAIAANEADAVTLDAGLVYDAYLAPNNLKPVVAEFYGSKEDPQTF site                                                              * site *+++++++++               *   * ** 1a8e YYAVAVVKKDSGFQMNQLRGKKSCHTGLGRSAGWNIPIGLLYCDLPEPRKPLEKAVANFFSGSCAPCADGTDFPQLCQLCPGCGCSTLNQ code 000000000RR000QABRGRG0000R00R00QB1Q8AAAABQABG00ORGOQAAAAAAB0R00000R00QAB0QAABQB00RR0R0QAGQ LCS  000000000RR000QA RGRG0000R00R00Q 1Q AAAABQABG0 ORG QAAAAAA 0R00000R0 QAB0QAABQB00RR0R QA Q code 000000000RR000QAJRGRG0000R00R00QG1QAAAAABQABG01ORGRQAAAAAAG0R00000R0RQAB0QAABQB00RR0RGQAJQ 1bp5 YYAVAVVKKDSGFQMNQLRGKKSCHTGLGRSAGWNIPIGLLYCDLPEPRKPLEKAVANFFSGSCAPCADGTDFPQLCQLCPGCGCSTLNQ site *+++++++++               *   * ** site    *++++++++++++++++                 +++++++++++++++++++++++++++*+++ 1a8e YFGYSGAFKCLKDGAGDVAFVKHSTIFENLANKADRDQYELLCLDNTRKPVDEYKDCHLAQVPSHTVVARSMGGKEDLIWELLNQAQEHF code BG0QAAAAAAAABRR0R00000QBQAABG0RGQAAAABG0000QBRG000QABQABG0R00000000000RGRRRQAAAAAAAAAAAAB0 LCS  BG0QAAAAAAAABRR0R00000Q  AA  0RGQAAAABG0000QBRG000QABQABG0R00000000000RGRRRQAAAAAAAAAAAAB0 code BG0QAAAAAAAABRR0R00000QAAAAA00RGQAAAABG0000QBRG000QABQABG0R00000000000RGRRRQAAAAAAAAAAAAB0 1bp5 YFGYSGAFKCLKDGAGDVAFVKHSTIFENLANKADRDQYELLCLDNTRKPVDEYKDCHLAQVPSHTVVARSMGGKEDLIWELLNQAQEHF site    *++++++++++++++++                                            * site  1a8e GKDKSKEFQLFSSPHGKDLLFKDSAHGFLKVPPRMDAKMYLGYEYVTAIRNLR EGTC code 00RO0QG00QG00QB00R0R00QBGR0000000R00QAAAB0QAAAAAAAAA8 R0-- LCS  00R 0Q 00QG00QB00R0R00QBGR0000000R00QAAAB0QAAAAAAAAA  R0 code 00R00QB00QG00QB00R0R00QBGR0000000R00QAAAB0QAAAAAAAAABOR00000Q-- 1bp5 GKDKSKEFQLFSSPHGKDLLFKDSAHGFLKVPPRMDAKMYLGYEYVTAIRNLREGTCPEAPTD site  *RATIO :  lcs/trimmed_seq_a = 0.923 (=  300/  325), lcs/trimmed_seq_b = 0.909 (=  300/  330)

Structural alignment by ComSubstruct + manual inspection

DSSP lEEEEEEEEHHHHHHHHHHHHHHHHHHLLLLLEEEEEEEELLHHHHHHHHHLLLLLLEEELHHHHHHHHLLLLLEEEEEEEELLLLLLLLLE 1a8e dKTVRWCAVSEHEATKCQSFRDHMKSVIPSDGPSVACVKKASYLDCIRAIAANEADAVTLDAGLVYDAYLAPNNLKPVVAEFYGSKEDPQTF       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1bp5 .KTVRWCAVSEHEATKCQSFRDHMKSVIPSDGPSVACVKKASYLDCIRAIAANEADAVTLDAGLVYDAYLAPNNLKPVVAEFYGSKEDPQTF DSSP .LEEEEEELLHHHHHHHHHHHHHHHHHLLLLLLEEEEEELLLHHHHHHHHHLLLLLLEEELHHHHHHHHLLLLLEEEEEEEELLLLLLLLLE DSSP EEEEEEEELLLLLLHHHLLLLLEEELLLLLLLLLHHHHHHHHHHLLLLLLLHHHHHHHHLLLEELLLLLLLLLHHHHLLLLLLLLllLLL 1a8e YYAVAVVKKDSGFQMNQLRGKKSCHTGLGRSAGWNIPIGLLYCDLPEPRKPLEKAVANFFSGSCAPCADGTDFPQLCQLCPGCGCstLNQ      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| 1bp5 YYAVAVVKKDSGFQMNQLRGKKSCHTGLGRSAGWNIPIGLLYCDLPEPRKPLEKAVANFFSGSCAPCADGTDFPQLCQLCPGCGCstLNQ DSSP EEEEEEEELLLLLLHHHLLLLEEEELLLLLLLLLHHHHHHHHHHLLLLLLLHHHHHHLLLLEEELLLLLLLLLHHHHLLLLLLLLllLLL DSSP LLHHHHHHHHHHLLLLLEEEEELLHHHHHLLLHHHHLLEEEEELLLEEEEHHHHHHLLLEEEELLEEEEELLLLLHHHHHHHHHHHHHHH 1a8e YFGYSGAFKCLKDGAGDVAFVKHSTIFENLANKADRDQYELLCLDNTRKPVDEYKDCHLAQVPSHTVVARSMGGKEDLIWELLNQAQEHF      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1bp5 YFGYSGAFKCLKDGAGDVAFVKHSTIFENLANKADRDQYELLCLDNTRKPVDEYKDCHLAQVPSHTVVARSMGGKEDLIWELLNQAQEHF DSSP LLHHHHHHHHHHLLLLLEEEEELLHHHHHLLLHHHHLLEEEEELLLEEEEHHHHHHLLLEEEELLEEEEELLLLLHHHHHHHHHHHHHHH DSSP LLLLLLLLLLLLLLLLLLLLLLLLLLEEEELLLLLLHHHHHLHHHHHHHHHHHLLLL...... 1a8e GKDKSKEFQLFSSPHGKDLLFKDSAHGFLKVPPRMDAKMYLGYEYVTAIRNLREGTC......      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1bp5 GKDKSKEFQLFSSPHGKDLLFKDSAHGFLKVPPRMDAKMYLGYEYVTAIRNLREGTCpeaptd DSSP LLLLLLLLLLLLLLLLLLLLLLLLLLEEEELLLLLLHHHHHLHHHHHHHHHHHHLLLllllll *Z-score 38.6  AR 326  RMSD 6.7A  SI 100%

Structural alignment by DaliLite

(3) Cluster 3

				Z-Score: 19.7 AR: 171 RMSD: 3.6A SI: 100%
1ake A (len 214)	4ake A (len 214)		DaliLite result

site       *********                *****************************                     ++++++++++++     1ake MRIILLGAPGAGKGTQAQFIMEKY GIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQ code --0000000RRRQAAAAAAAAAAB R00000QAAAAAAAAABR0QG1QABQAAAABR0000QAAAAAAAAAAABGQAAQJ00000R0OR0QAA LCS    0000000RR QAA  AAAAA B R00000QAAAAAAAAABR0Q   A  AAAABR0000QAAAAAAAAAAABGQA Q 00000R0OR0QAA code --0000000RR0QAABQAAAAA B0R00000QAAAAAAAAABR0QAAAAAAAAAABR0000QAAAAAAAAAAABGQABQB00000R0OR0QAA 4ake MRIILLGAPGAGKGTQAQFIME KYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQ site       *********                *****************************                     ++++++++++++ site  1ake ADAMKEAGINVDYVLEFDVPDELIVDRIV  GRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRK DDQEETVRKRLVEYHQMTA  PLIGYY code AAAAAABR000O00000000QABHAAAAA  BG00RQB0R0000R00000RG0RG0Q00R000000Q BR0QAAAAAAAAAAA801A  AAAAAA LCS  AAAAAABR000 00000000QA  AAAA   BG00R B0R0000R00000  0RG0Q 0R000000Q B  QAAAAAAAAAAA   A  AAAAAA code AAAAAABR000R00000000QA  AAAAB1QBG00RPB0R0000R00000QB0RG0QB0R000000QABG QAAAAAAAAAAA  AA2QAAAAAA 4ake ADAMKEAGINVDYVLEFDVPDE  LIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQ EETVRKRLVEYH  QMTAPLIGYY site  site  1ake SKEAEAGNTKYAKVDGTKPVAEVRADLEKILG code AAAAABRR0000000QBG0QAAAAAAAAAB-- LCS  AAAAABRR000000 QBG0QAAAAAAAAAB code AAAAABRR000000RQBG0QAAAAAAAAAB-- 4ake SKEAEAGNTKYAKVDGTKPVAEVRADLEKILG site  *RATIO :  lcs/trimmed_seq_a = 0.881 (=  185/  210), lcs/trimmed_seq_b = 0.881 (=  185/  210)

Structural alignment by ComSubstruct + manual inspection

DSSP LEEEEEELLLLLHHHHHHHHHHHHLLLEEEHHHHHHHHHHHLLLLLHHHHHhhhhlllLLHHHHHHHHHHHHHLHHHHHLEEEELLLLLHHH 1ake MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDimdagklVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQ      |||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||| 4ake MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDimdagklVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQ DSSP LEEEEEELLLLLHHHHHHHHHHHHLLLEELHHHHHHHHHHLLLHHHHHHHHhhhllllLLHHHHHHHHHHHLLLHHHLLLEEEELLLLLHHH DSSP HHHHHHLLLLLLEEEEEELLHHHHHHHHHleeeelllleeeelllllllllllllllllllllllLLLHHHHHHHHHHHHHHLLLHHHHH 1ake ADAMKEAGINVDYVLEFDVPDELIVDRIVgrrvhapsgrvyhvkfnppkvegkddvtgeelttrkDDQEETVRKRLVEYHQMTAPLIGYY      |||||||||||||||||||||||||||||                                    ||||||||||||||||||||||||| 4ake ADAMKEAGINVDYVLEFDVPDELIVDRIVgrrvhapsgrvyhvkfnppkvegkddvtgeelttrkDDQEETVRKRLVEYHQMTAPLIGYY DSSP HHHHHHLLLLLLEEEEEELLHHHHHHHHHleeelllllleeelllllllllleelllleelllllLLLHHHHHHHHHHHHHHHHHHHHHH DSSP HHHHHLLLLEEEEEELLLLHHHHHHHHHHHHL 1ake SKEAEAGNTKYAKVDGTKPVAEVRADLEKILG      |||||||||||||||||||||||||||||||| 4ake SKEAEAGNTKYAKVDGTKPVAEVRADLEKILG DSSP HHHHHLLLLEEEEEELLLLHHHHHHHHHHHHL *Z-score 19.7  AR 171  RMSD 3.6A  SI 100%

Structural alignment by DaliLite

(4) Cluster 4

				Z-Score: 2.8 AR: 34 RMSD: 1.0A SI: 91%
1aoj A (len 60)	1i0c A (len 59)		DaliLite result

site  1aoj KKYAKSKYDFVARNSSELSVMKDDVLEILD DRRQWWKVRNASGDSGFVPNNILDIMRTPE code --0000R0000000QBG00000R000000R RR00000000QBR000000QAGG00000-- LCS    0000R00000 0Q G00000R00000 R RR0  00000QBR 00000QA G0000 code --0000R00000R0QGG00000R00000 R0RR0RG00000QBRG00000QABG0000-- 1i0c KKYAKSKYDFVARNSSELSVMKDDVLEI LDDRRQWWKVRNASGDSGFVPNNILDIMRTP site *RATIO :  lcs/trimmed_seq_a = 0.857 (=   48/   56), lcs/trimmed_seq_b = 0.873 (=   48/   55)

Structural alignment by ComSubstruct + manual inspection

DSSP LEEEELLLLLLLLLLLLLLLLLLLEEEELLlLLLEeeeellllleeeeehhhllllllll 1aoj KKYAKSKYDFVARNSSELSVMKDDVLEILDdRRQWwkvrnasgdsgfvpnnildimrtpe      ||||||||||||||||||||||||||||||  | 1i0c KKYAKSKYDFVARNSSELSVMKDDVLEILD.DRRQwwkvrnasgdsgfvpnnildimrtp DSSP LEEEEELLLLLLLLLLLLLLLLLLEEEEEE.LLLLeeeeellllleeeeehhheeeelll *Z-score 2.8  AR 34  RMSD 1.0A  SI 91%

Structural alignment by DaliLite

(5) Cluster 5

				Z-Score: 59.6 AR: 609 RMSD: 3.9A SI: 99%
1bka (len 688)	1cb6 A (len 691)		DaliLite result

site                                                            *            *                   *+++ 1bka    RSVQWCAVSQPEATKCFQWQRNMRKVRGPPVSCIKRDSPIQCIQAIAENRADAVTLDGGFIYEAGLAPYKLRP VAAEVYGTERQPRTHYYAV code    --00000R0QAAAAAAAAAAAAAAABR000000000R0QAAAAAAAABRR0000000QAAAAAABG0OJR000 00000000QB000RG0000 LCS       00000R0QAAAAAAAAAAAAAAABR000000000R0QAAAAAAAABRR0000000QAAAAAABG0O R000 00000000Q  00R 0000 code --0RG00000R0QAAAAAAAAAAAAAAABR000000000R0QAAAAAAAABRR0000000QAAAAAABG0OGR000R00000000QG 00R 0000 1cb6 GRRRSVQWCAVSQPEATKCFQWQRNMRKVRGPPVSCIKRDSPIQCIQAIAENRADAVTLDGGFIYEAGLAPYKLRPVAAEVYGTERQ PRT HYYA site                                                            *            *                    * site ++++++                *   * ** 1bka AVVKKGGS FQLNELQGLKSCHTGLRRTAG  WNVPIGTLRPFL NWTGPPEPIEAAVARFFSASCVPGADK GQFPNLCRLCAGTGENKCAFSS code 00001RG0 00QABR0RG0000R00R0Q80  1Q0AAAABQAAB R0R00RG0QAAAAAAB0R00000R00Q BR0QAABQB00000QBGR0RGQ LCS  0000   0 00QABR0RG0000R00R0  0  1Q AAAABQA B R0R0  G0QAAAAAA 0R00000R00Q B 0QAABQB00000QBGR0RGQ code 00000000R00QABR0RG0000R00R0  0QB1QAAAAABQA BGR0R0QBG0QAAAAAAG0R00000R00QAB 0QAABQB00000QBGR0RGQ 1cb6 VAVVKKGGSFQLNELQGLKSCHTGLRR  TAGWNVPIGTLRP FLNWTGPPEPIEAAVARFFSASCVPGADKGQ FPNLCRLCAGTGENKCAFSS site                       *   *   ** site       *++++++++++++++++                 +++++++++++++++++++++++++++*+++  * 1bka QEPYFSYSGAFKCLRDGAGDVAFIRESTVFEDLSDEAERDEYELLCPDNTRKPVDKFKDCHLARVPSHAVVARSVNGKEDAIWNLLRQAQ code BGQBG0QAAAAAAAABRR0R00000QHQAAABGRGQAAAABG0000QBRG000QABQAB00R00000000000RGRRRQAAAAAAAAAAA LCS  BGQBG0QAAAAAAAABRR0R00000Q  AAABGRGQAAAABG0000QBRG000QABQ B 0R00000000000RGRRRQAAAAAAAAAAA code BGQBG0QAAAAAAAABRR0R00000QAAAAABGRGQAAAABG0000QBRG000QABQBBG0R00000000000RGRRRQAAAAAAAAAAA 1cb6 QEPYFSYSGAFKCLRDGAGDVAFIRESTVFEDLSDEAERDEYELLCPDNTRKPVDKFKDCHLARVPSHAVVARSVNGKEDAIWNLLRQAQ site       *                                                            *     * site  1bka EKFGKDKSPKFQLFG SPSGQKDLLFKDSAIGFSRVPPRIDSGLYLGSGYFTAIQN LRKSEEEVAARRARVVWCAVGEQELRKCNQWSGLS code AGR003O0QB00QBG 000RG0R0R000R0R000000QBG0QAAAB0QAAAAAAAA BG00QAAAAAAABG0000000QAAAAAAAAAAAAB LCS    R00  0QB00  G 000RG0R0R00   R000000QBG0QAAAB0QAAAAAAAA BG 0QAAAAAAABG0000000QAAAAAAAAAAA B code B0R00RR0QB00R G0000RG0R0R00QBGR000000QBG0QAAAB0QAAAAAAAAABG 0QAAAAAAABG0000000QAAAAAAAAAAABB 1cb6 EKFGKDKSPKFQL FGSPSGQKDLLFKDSAIGFSRVPPRIDSGLYLGSGYFTAIQNLRK SEEEVAARRARVVWCAVGEQELRKCNQWSGLS site  site                              *                                        *+++++++++ 1bka EGSVTCSSASTTEDCIALVLKGEADAMSLDGGYVYTAGKCGLVPVLAENYKSQQS SDPDPNCVDRPVEGYLAVAVVRRSDTSLTWNSVKG code RRR000000RGQAAAAAAAABRR0000000QAAAAAAAABR00000000000RRR 00R0QJQABG000000O00000QABQBG0QA9RGR LCS  RRR 00000R QAAAAAAAABRR0000000QAAAAAAAABR0000000000 R   00 0Q QABG000000 00000QA QBG0QA RGR code RRRG00000R0QAAAAAAAABRR0000000QAAAAAAAABR0000000000 R0QG0000QBQABG000000000000QAGQBG0QABRGR 1cb6 EGSVTCSSASTTEDCIALVLKGEADAMSLDGGYVYTAGKCGLVPVLAENYK SQQSSDPDPNCVDRPVEGYLAVAVVRRSDTSLTWNSVKG site                              *                                        * site      *   * **                                                           *++++++++++++++++ 1bka KKSCHTAVDRTAGWNIPMGLLFNQTGSCKFDEYFSQSCAPGSDPRSNLCALCIGDEQGENKCVPNSNERYYGYTGAFRCLAENAGDVAFV code G0000R00000001QA1AAAAAAG0R0RRQAAB0R00000RG0QBGQA9QB0000QBR0R0R0RGQBGQBG0QAAAAAAAABRR0R0000 LCS  G0000R00 00  1QA AAAAAA 0R0RRQAAB0R0000 RG0QBGQA QB 000QBR0R0R0RGQ GQBG0QAAAAAAAABRR0R0000 code G0000R00R00QB1QAAAAAAAAB0R0RRQAAB0R00001RG0QBGQABQBG000QBR0R0R0RGQAGQBG0QAAAAAAAABRR0R0000 1cb6 KKSCHTAVDRTAGWNIPMGLLFNQTGSCKFDEYFSQSCAPGSDPRSNLCALCIGDEQGENKCVPNSNERYYGYTGAFRCLAENAGDVAFV site      *   * **                                                           * site                         +++++++++++++++++++++++++++*+++ 1bka KDVTVLQNTDGNNNEAWAKDLKLADFALLCLDGKRKPVTEARSCHLAMAPNHAVVSRMDKVERLKQVLLHQQA KFGRNGSDCPDKFCLFQ code 0QAAAAAGGRRRGR0QAHR000QABG0000QBRG000QABQABG0R00000000000QAGHAAAAAAAAAAAB 0RGRB01R0PB000QBG LCS  0QAAAAAGGRRRGR Q    00QABG0000QBR 000QABQABG0R00000000000QA  AAAAAAAAAAA  0 G B0  0PB000QBG code 0QAAAAAGGRRRGRGQB1QB00QABG0000QBR0000QABQABG0R00000000000QABQAAAAAAAAAAAAG0 GQB0QB0PB000QBG 1cb6 KDVTVLQNTDGNNNEAWAKDLKLADFALLCLDGKRKPVTEARSCHLAMAPNHAVVSRMDKVERLKQVLLHQQAKF GRNGSDCPDKFCLFQ site                                                    * site  1bka SETKNLLFNDNTECLARLHGKTTYEKYLGPQYVAGITNLKKCSTSPLLEACEFLRK code R0QBR0R00QB0R00000RRR0GQIAAB0QAAAAAAAAAAAB000QAAAAAAAA-- LCS  R   R0R00QB0R00000RRR0GQ AAB0QAAAAAAAAAAAB000QAAAAAAAA code RRRGR0R00QB0R00000RRR0GQAAAB0QAAAAAAAAAAAB000QAAAAAAAA-- 1cb6 SETKNLLFNDNTECLARLHGKTTYEKYLGPQYVAGITNLKKCSTSPLLEACEFLRK site  *RATIO :  lcs/trimmed_seq_a = 0.904 (=  618/  684), lcs/trimmed_seq_b = 0.900 (=  618/  687)

Structural alignment by ComSubstruct + manual inspection

DSSP ...LLEEEEELLHHHHHHHHHHHHHHHHLLLLLEEEEELLLHHHHHHHHHLLLLLLEEELHHHHHHHHLLLLLLEEEEEEEEELLLLEELEEEEE 1bka ...RSVQWCAVSQPEATKCFQWQRNMRKVRGPPVSCIKRDSPIQCIQAIAENRADAVTLDGGFIYEAGLAPYKLRPVAAEVYGTERQPRTHYYAV         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1cb6 grrRSVQWCAVSQPEATKCFQWQRNMRKVRGPPVSCIKRDSPIQCIQAIAENRADAVTLDGGFIYEAGLAPYKLRPVAAEVYGTERQPRTHYYAV DSSP lllLLEEEEELLHHHHHHHHHHHHHHHHLLLLLEEEEELLLHHHHHHHHHLLLLLLEEELHHHHHHHHLLLLLEEEEEEEEEEELLEEELEEEEE DSSP EEeelllllllLLLLLLLeEELLLLLLLLLHHHHHHLHHHHLLLLLLLLHHHHHHHHLLLEellLLLLLLLHHHHLlllllhhhllllll 1bka AVvkkggsfqlNELQGLKsCHTGLRRTAGWNVPIGTLRPFLNWTGPPEPIEAAVARFFSAScvpGADKGQFPNLCRlcagtgenkcafss      ||         ||||||| ||||||||||||||||||||||||||||||||||||||||||   |||||||||||| 1cb6 AVvkkggsfqlNELQGLKsCHTGLRRTAGWNVPIGTLRPFLNWTGPPEPIEAAVARFFSAScvpGADKGQFPNLCR.............. DSSP EEeellllllhHHLLLLEeEELLLLLLLLLHHHHHHLHHHLLLLLLLLLHHHHHHHHLLEEellLLLLLLLHHHHL.............. DSSP lllllhhhhhhhHHHLLlllleeeellhhhhhlllhhhhlleeeellllleelllhHHHL...............................lLEEEELLEEEELLLLLLHHHHHHHHHHHH 1bka qepyfsysgafkCLRDGagdvafirestvfedlsdeaerdeyellcpdntrkpvdkFKDC...............................hLARVPSHAVVARSVNGKEDAIWNLLRQAQ                                                                                                  ||||||||||||||||||||||||||||| 1cb6 .lcagtgenkcaFSSQE................pyfsysgafkclrdgagdvafirESTVfedlsdeaerdeyellcpdntrkpvdkfkdchLARVPSHAVVARSVNGKEDAIWNLLRQAQ DSSP .lllllhhhlllLLLLL................lllhhhhhhhhhhllllleeeeeLHHHhhhllllllhhheeeellllleeehhhlllllLEEEELLEEEEELLLLLHHHHHHHHHHHH DSSP HHHLLLLLLLLLLLLLLLLLLLLLLLLLLLEEEELLLLLLHHHHHLHHHHHHHHHHHLLHHHHHHHHHLEEEEEELHHHHHHHHHHHHHH 1bka EKFGKDKSPKFQLFGSPSGQKDLLFKDSAIGFSRVPPRIDSGLYLGSGYFTAIQNLRKSEEEVAARRARVVWCAVGEQELRKCNQWSGLS      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1cb6 EKFGKDKSPKFQLFGSPSGQKDLLFKDSAIGFSRVPPRIDSGLYLGSGYFTAIQNLRKSEEEVAARRARVVWCAVGEQELRKCNQWSGLS DSSP HHHLLLLLLLLLLLLLLLLLLLLLLLLLLLEEEELLLLLLHHHHHHHHHHHHHHHLLLLHHHHHHHHHLEEEEEELHHHHHHHHHHHHHL DSSP LLLEEEEEELLHHHHHHHHHLLLLLEEEELHHHHHHHHHHLLEEEEEEELLLLLLLLLLLLLLLLLLLLEEEEEEEELLLLLLLHHHLLL 1bka EGSVTCSSASTTEDCIALVLKGEADAMSLDGGYVYTAGKCGLVPVLAENYKSQQSSDPDPNCVDRPVEGYLAVAVVRRSDTSLTWNSVKG      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1cb6 EGSVTCSSASTTEDCIALVLKGEADAMSLDGGYVYTAGKCGLVPVLAENYKSQQSSDPDPNCVDRPVEGYLAVAVVRRSDTSLTWNSVKG DSSP LLLEEEEEELLHHHHHHHHHHLLLLLEEELHHHHHHHHHLLLEEEEEEEELLLLLLLLLLLHHHLLLLLEEEEEEEELLLLLLLHHHLLL DSSP LLEEELLLLLLLLLHHHHHHHHHHHLLLLLLLLLLLEELLLLLLLLHHHLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHLLLLLEEEE 1bka KKSCHTAVDRTAGWNIPMGLLFNQTGSCKFDEYFSQSCAPGSDPRSNLCALCIGDEQGENKCVPNSNERYYGYTGAFRCLAENAGDVAFV      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1cb6 KKSCHTAVDRTAGWNIPMGLLFNQTGSCKFDEYFSQSCAPGSDPRSNLCALCIGDEQGENKCVPNSNERYYGYTGAFRCLAENAGDVAFV DSSP LEEEELLLLLLLLLHHHHHHHHHHHLLLLHHHLLLEEELLLLLLLLHHHLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHLLLLLEEEE DSSP ELHHHHLLLLLLLLLHHHHLLLHHHEEEELLLLLEELHHHLLLLLLEEELLLEEEELLLLHHHHHHHHHHHHHHHLLLLLLLLLLLLLLL 1bka KDVTVLQNTDGNNNEAWAKDLKLADFALLCLDGKRKPVTEARSCHLAMAPNHAVVSRMDKVERLKQVLLHQQAKFGRNGSDCPDKFCLFQ      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1cb6 KDVTVLQNTDGNNNEAWAKDLKLADFALLCLDGKRKPVTEARSCHLAMAPNHAVVSRMDKVERLKQVLLHQQAKFGRNGSDCPDKFCLFQ DSSP EHHHHHLLLLLLLLLHHHHLLLHHHEEEELLLLLEEEHHHHHHLLLEEELLLEEEELHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLL DSSP LLLLLLLLLLLLLEEELLLLLLLHHHHHLHHHHHHHHHHHLLLLLHHHHHHHHHHL 1bka SETKNLLFNDNTECLARLHGKTTYEKYLGPQYVAGITNLKKCSTSPLLEACEFLRK      |||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1cb6 SETKNLLFNDNTECLARLHGKTTYEKYLGPQYVAGITNLKKCSTSPLLEACEFLRK DSSP LLLLLLLLLLLEEEEELLLLLLLHHHHHLHHHHHHHHHHHHHLLLHHHHHHHHHHL *Z-score 59.6  AR 609  RMSD 3.9A  SI 99%

Structural alignment by DaliLite

[The DSSP code]

• H = alpha helix
• B = residue in isolated beta-bridge
• E = extended strand, participates in beta ladder
• G = 3-helix (3/10 helix)
• I = 5 helix (pi helix)
• T = hydrogen bonded turn
• S = bend
• L = no assigned structure

[The 5-tile code]

• 0 = DDDDD    (extended strand, small blue spheres)
• 1 = DDDDU
• 2 = DDDUD
• 3 = DDDUU
• 8 = DUDDD
• 9 = DUDDU
• A = DUDUD    (helix, large red spheres)
• B = DUDUU    (turn, large yellow spheres)
• G = UDDDD
• H = UDDDU
• I = UDDUD
• J = UDDUU
• O = UUDDD
• P = UUDDU
• Q = UUDUD    (turn, large yellow spheres)
• R = UUDUU    (turn, large yellow spheres)