• Backbone structures are obtained using ProteinViewer, where N-terminal is colored red and C-terminal blue.
• Click the images to view larger image.
• Click PDB IDs to view the corresponding PDB file
• See the bottom for brief explanation of the DSSP codes and the 5-tile codes. 
• The "site" row indicates active site residues:
          "*" denotes active sites registered in SwissProt/UniProt.
          "+" denotes active sites registered in PROSITE/UniProt.
           Residues registered in both of them are denoted by "*."
• In the images of superimposition, the C-terminal of the first sequence is connected with the N-terminal of the second sequecne
  (because of the DaliLite output format).
  

(1) Cluster 6

(1-1)

				Z-Score: 11.6 AR: 68 RMSD: 1.1A SI: 100%
1bmb A (len 98)	1fyr B (len 98)		DaliLite result

site  1bmb  KPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQ code  --0QGGR0000QAAAAAAAABG0G0R0000000QB00RG00000000RG00000R000QBR000R00000R0QAAAAAAAB0G0RGQB0O000000-- LCS     0Q G 0000QAAAAAAAABG0G0R 000000QB 0RG00000000RG00000 000QBR000R00000R0QAAAAAAAB0G0RGQB0 000000 code --00QBG00000QAAAAAAAABG0G0RR000000QBG0RG00000000RG000000000QBR000R00000R0QAAAAAAAB0G0RGQB0 000000-- 1fyr MKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQ QIFLRDIE site  *RATIO :  lcs/trimmed_seq_a = 0.936 (=   88/   94), lcs/trimmed_seq_b = 0.936 (=   88/   94)

Structural alignment by ComSubstruct + manual inspection

DSSP .LLLLLLLLLLLHHHHHHHHHLLLLLLLEEEEELLLLLLLEEEEEEELLEEEEEELEELLLLLEELLLLeellhhhhhhhlllllllllllllllllll 1bmb .KPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVkfnslnelvdyhrstsvsrnqqiflrdieq       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1fyr mKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVV.kfnslnelvdyhrstsvsrnqqiflrdie DSSP lLLLLLLLLLLLHHHHHHHHHLLLLLLLEEEEELLLLLLLEEEEEEELLEEEEEELEELLLLLEELLLL.llllhhhhhhhhhhlllllllllllllll *Z-score 11.6  AR 68  RMSD 1.1A  SI 100%

Structural alignment by DaliLite

(1-2)

				Z-Score: 11.4 AR: 68 RMSD: 0.9A SI: 100%
1bmb A (len 98)	1fyr C (len 98)		DaliLite result

site                                                                                                         1bmb  KPHPWFFGKIPRAKAEEMLSKQRHDG   AFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYH RSTSVSRNQQIFLRDIEQ code  --0QGGR0000QAAAAAAAABG0G0R   0000000QB00RG00000000RG00000R000QBR000R00000R0QAAAAAAA B0G0RGQB0O000000-- LCS     0QGG 0000QAAAAAAAABG   R   0000000QB00RG00000000RG00000 000QBR000R00000R0QAAAAAAA B G0RGQB0 000000 code --00QGG30000QAAAAAAAABG   RG1B0000000QB00RG00000000RG000000000QBR000R00000R0QAAAAAAAAB G0RGQB0 000000-- 1fyr MKPHPWFFGKIPRAKAEEMLSKQ   RHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRS TSVSRNQ QIFLRDIE site  *RATIO :  lcs/trimmed_seq_a = 0.926 (=   87/   94), lcs/trimmed_seq_b = 0.926 (=   87/   94)

Structural alignment by ComSubstruct + manual inspection

DSSP .LLLLLLLLLLLHHHHHHHHHLLLLLLLEEEEELLLLLLLEEEEEEELLEEEEEELEELLLLLEELLLLeellhhhhhhhlllllllllllllllllll 1bmb .KPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVkfnslnelvdyhrstsvsrnqqiflrdieq       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1fyr mKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVV.kfnslnelvdyhrstsvsrnqqiflrdie DSSP lLLLLLEEEELLHHHHHHHHLLLLLLLLEEEEELLLLLLLEEEEEEELLEEEEEELEELLLLLEELLLL.llllhhhhhhhllllllllllllllllll *Z-score 11.4  AR 68  RMSD 0.9A  SI 100%

Structural alignment by DaliLite

(1-3)

				Z-Score: 10.5 AR: 66 RMSD: 1.0A SI: 100%
1bmb A (len 98)	1fyr D (len 95)		DaliLite result

site  1bmb KPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQ code --0QGGR0000QAAAAAAAABG0G0R0000000QB00RG00000000RG00000R000QBR000R00000R0QAAAAAAAB0G0RGQB0O000000-- LCS       GR0 00QAAAAAAAABG G R0000000 B 0RG00000000RG00000 000QBR000R00 00R0QAAAAAAAB G0RGQB  000000 code   --BGR0R00QAAAAAAAABGRG1R00000002BG0RG00000000RG000000000QBR000R00R00R0QAAAAAAABBG0RGQBG 000000-- 1fyr   HPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQ QIFLRDIE site  *RATIO :  lcs/trimmed_seq_a = 0.862 (=   81/   94), lcs/trimmed_seq_b = 0.890 (=   81/   91)

Structural alignment by ComSubstruct + manual inspection

DSSP llLLLLLLLLLHHHHHHHHHLLLLLLLEEEEELLLLLLLEEEEEEELLEEEEEELEELLLLLEELLLLeellhhhhhhhlllllllllllllllllll 1bmb kpHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVkfnslnelvdyhrstsvsrnqqiflrdieq        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1fyr ..HPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVV.kfnslnelvdyhrstsvsrnqqiflrdie DSSP ..LLLLLLLLLHHHHHHHHLLLLLLLLEEEEELLLLLLLEEEEEEELLEEEEEELEELLLLLEELLLL.llllhhhhhhhllllllllllllllllll *Z-score 10.5  AR 66  RMSD 1.0A  SI 100%

Structural alignment by DaliLite

(2) Cluster 7

				Z-Score: 11.3 AR: 73 RMSD: 1.0A SI: 100%
1brs B (len 110)	1yvs (len 108)		DaliLite result

site                                                                          *                            *         1brs AQVINTFDGVADYLQTYHKLPDNYITKSEAQALGWVASKGN LADVAPGKSIGGDIFSNREGKLPGKSGRTWREADINYTSGFRNSDRILYSSDWLIYKTTDHYQTFTKIR code --0000QAAAAAAAA0ORG00QBG00QAAAAAB000QABR1 QAAB00RG001R000RRQBRRG0000R00000000R0000000RG00000QB000000QBRRR0000-- LCS      00QAAAAAAAA0 RG00QBG00QAAAAAB000   R  QAAB00RG001R000RRQBRRG0000R00000000R0000000RG00000QB000000Q RRR0000 code   --00QAAAAAAAA00RG00QBG00QAAAAAB00000 RBGQAAB00RG001R000RRQBRRG0000R00000000R0000000RG00000QB000000QGRRR0000-- 1yvs   VINTFDGVADYLQTYHKLPDNYITKSEAQALGWVAS KGNLADVAPGKSIGGDIFSNREGKLPGKSGRTWREADINYTSGFRNSDRILYSSDWLIYKTTDHYQTFTKIR site                                                                          *                            * *RATIO :  lcs/trimmed_seq_a = 0.925 (=   98/  106), lcs/trimmed_seq_b = 0.942 (=   98/  104)

Structural alignment by ComSubstruct + manual inspection

DSSP llllllhhhhhhhhhhhlllllleelhhhhhhllllhHHLLHHHHLLLLEEEEEEELLLLLLLLLLLLLLEEEEELLLLLLLLLLLEEEEELLLLEEEELLLLLLLEELL 1brs aqvintfdgvadylqtyhklpdnyitkseaqalgwvaSKGNLADVAPGKSIGGDIFSNREGKLPGKSGRTWREADINYTSGFRNSDRILYSSDWLIYKTTDHYQTFTKIR                                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1yvs ..vintfdgvadylqtyhklpdnyitkseaqalgwvaSKGNLADVAPGKSIGGDIFSNREGKLPGKSGRTWREADINYTSGFRNSDRILYSSDWLIYKTTDHYQTFTKIR DSSP ..llllhhhhhhhhhhhlllllllllhhhhhhlllllLLLLHHHHLLLLLLEEEEELLLLLLLLLLLLLLEEEEELLLLLLLLLLLEEEEELLLLEEEELLLLLLLEELL *Z-score 11.3  AR 73  RMSD 1.0A  SI 100%

Structural alignment by DaliLite

(3) Cluster 8

(3-1)

				Z-Score: 17.0 AR: 112 RMSD: 1.5A SI: 100%
1c0b A (len 124)	1f0v A (len 124)		DaliLite result

site        *  * *                           +++++++                      *                       *         1c0b  KETAAAKFERQHMDSSTSAASSSNYCNQMMKSRNLTKDRCKP VNTFVHESLADVQAVCSQKNVAC  KN GQT  NCYQSYSTMSITD  CRET GSSKY code  --1AAAAAAB0000QB0R0000QAAAAAAAAABRQB0R000R 00000RG0QAAAAAAABG00000  R0 R01  RG000R0000000  0001 0003G LCS      AAAAAAB 000QB R00 0Q  AAAAAAABRQB R000R 00000RG0QAAAAAAABG00000  R0 R0   RG000 0000000  000  000 code --0QAAAAAAB 000QBGR00R0QBQAAAAAAABRQB R000R000000RG0QAAAAAAABG00000QBR01R0000RG000 0000000QB000QB000 1f0v KETAAAKFERQ HMDSSTSAASSSNYCNQMMKSRNLT KDRCKPVNTFVHESLADVQAVCSQKNVACKNGQTNCYQSYSTMS ITDCRETGSSKYPNCAY site       *  *  *                            +++++++                   *                   * site  1c0b PNCAYKTTQANKHIIVACEGNPYVPVHFDASV code RJ000000000000000001RO00000000-- LCS    00000000000000000   00000000 code   00000000000000000   00000000-- 1f0v   KTTQANKHIIVACEGNP   YVPVHFDASV site  *RATIO :  lcs/trimmed_seq_a = 0.858 (=  103/  120), lcs/trimmed_seq_b = 0.858 (=  103/  120)

Structural alignment by ComSubstruct + manual inspection

DSSP lLLHHHHHHHHHLLLLLLLLLLHHHHHHHHHHLLLLLLLLLLEEEEELLLHHHHHHHHHLEEELLLLLLLLEEELLLLEEEEEEEELLLLLL 1c0b kETAAAKFERQHMDSSTSAASSSNYCNQMMKSRNLTKDRCKPVNTFVHESLADVQAVCSQKNVACKNGQTNCYQSYSTMSITDCRETGSSKY       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1f0v kETAAAKFERQHMDSSTSAASSSNYCNQMMKSRNLTKDRCKPVNTFVHESLADVQAVCSQKNVACKNGQTNCYQSYSTMSITDCRETGSSKY DSSP lLLHHHHHHHHHLLLLLLLLLLLLHHHHHHHHLLLLLLLLLLEEEEELLLHHHHHHHHHLEEELLLLLLLLEEELLLLEEEEEEEELLLLLL DSSP LLLLEEEEEEEELLEEEEELLlleeeeellll 1c0v PNCAYKTTQANKHIIVACEGNpyvpvhfdasv      ||||||||||||||||||||| 1f0v PNCAYKTTQANKHIIVACEGNpyvpvhfdasv DSSP LLLLEEEEEEEELLEEELLLLlllllllllll *Z-score 17.0  AR 112  RMSD 1.5A  SI 100%

Structural alignment by DaliLite

(3-2)

				Z-Score: 16.9 AR: 113 RMSD: 1.8A SI: 100%
1c0b A (len 124)	1js0 A (len 124)		DaliLite result

site        *  * *                           +++ ++++                     *                  *         1c0b  KETAAAKFERQHMDSSTSAASSSNYCNQMMKSRNLTKDRCKP VNTFVHESLADVQAVCSQKNVAC  KNGQTNCYQSYSTMSITDCRETG  SSKY code  --1AAAAAAB0000QB0R0000QAAAAAAAAABRQB0R000R 00000RG0QAAAAAAABG00000  R0R01RG000R000000000010  003G LCS      AAAAAA 000 QB R00 0Q  AAAAA ABRQB R000R 00000RG0QAAAAAAABG00000  R0R  RG000R0000000000 0  00 code --0QAAAAAAG000 QBGR00R0QBQAAAAAHABRQB R000RR00000RG0QAAAAAAABG00000QBR0R  RG000R0000000000 0QB000 1js0 KETAAAKFERQHMD SSTSAASSSNYCNQMMKSRNLT KDRCKPVNTFVHESLADVQAVCSQKNVACKNGQT  NCYQSYSTMSITDCRE TGSSKY site         *  * *                             +++++++                   *                    * site  1c0b PNCAYKTTQANKHIIVACEGNPY  VPVHFD ASV code RJ000000000000000001RO0  000000 0-- LCS    00000000000000000   0  000000 0 code PB00000000000000000   03O000000R0-- 1js0 PNCAYKTTQANKHIIVACE   GNPYVPVHFDASV site                              * *RATIO :  lcs/trimmed_seq_a = 0.842 (=  101/  120), lcs/trimmed_seq_b = 0.842 (=  101/  120)

Structural alignment by ComSubstruct + manual inspection

DSSP lLLHHHHHHHHHLLLLLLLLLLHHHHHHHHHHLLLLLLLLLLEEEEELLLHHHHHHHHHLEEELLLLLLLLEEELLLLEEEEEEEELLLLLL 1c0b kETAAAKFERQHMDSSTSAASSSNYCNQMMKSRNLTKDRCKPVNTFVHESLADVQAVCSQKNVACKNGQTNCYQSYSTMSITDCRETGSSKY       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1js0 kETAAAKFERQHMDSSTSAASSSNYCNQMMKSRNLTKDRCKPVNTFVHESLADVQAVCSQKNVACKNGQTNCYQSYSTMSITDCRETGSSKY DSSP lLLHHHHHHHHHLLLLLLLLLLLLHHHHHHHHLLLLLLLLLLEEEEELLLHHHHHHHHHLEEELLLLLLLLEEELLLLEEEEEEEELLLLLL DSSP LLLLEEEEEEEELLEEEEELLLleeeeellll 1c0b PNCAYKTTQANKHIIVACEGNPyvpvhfdasv      |||||||||||||||||||||| 1js0 PNCAYKTTQANKHIIVACEGNPyvpvhfdasv DSSP LLLLEEEEEEEELLEEELLLLLllllllllll *Z-score 16.9  AR 113  RMSD 1.8A  SI 100%

Structural alignment by DaliLite

(3-3)

				Z-Score: 20.7 AR: 121 RMSD: 5.4A SI: 93%
1f0v A (len 124)	1js0 A (len 124)		DaliLite result

site       *  * *                           ++ +++++                   *                   *       1f0v KETAAAKFERQHMDSSTSAASSSNYCNQMMKSRNLTKDRCK PVNTFVHESLADVQAVCSQKNVACKNGQTNCYQSYSTMS ITDCRETGSSKY code --0QAAAAAAB000QBGR00R0QBQAAAAAAABRQBR000R 000000RG0QAAAAAAABG00000QBR01R0000RG000 0000000QB000 LCS    0QAAAAAA 000QBGR00R0QBQAAAAA ABRQBR000R 00000 RG0QAAAAAAABG00000QBR0 R    RG000 0000000  000 code --0QAAAAAAG000QBGR00R0QBQAAAAAHABRQBR000RR00000 RG0QAAAAAAABG00000QBR0 R    RG000R00000000 000 1js0 KETAAAKFERQHMDSSTSAASSSNYCNQMMKSRNLTKDRCKPVNTFV HESLADVQAVCSQKNVACKNGQ T    NCYQSYSTMSITDC RET site       *  * *                           +++++++                    *                        * site  1f0v PNCAY  KTTQANKHIIVACEGNPY  VPVHFD ASV code QB000  000000000000000000  000000 0-- LCS  QB000  000000000000000000  000000 0 code QB000PB0000000000000000003O000000R0-- 1js0 GSSKYPNCAYKTTQANKHIIVACEGNPYVPVHFDASV site                                * *RATIO :  lcs/trimmed_seq_a = 0.917 (=  110/  120), lcs/trimmed_seq_b = 0.917 (=  110/  120)

Structural alignment by ComSubstruct + manual inspection

DSSP LLLHHHHHHHHHLLLLLLLLLLLLHHHHHHHHLLLLLLLLLLEEEEELLLHHHHHHHHHLEEELLLLLLLLEEELLLLEEEEEEEELLLLLL 1f0v KETAAAKFERQHMDSSTSAASSSNYCNQMMKSRNLTKDRCKPVNTFVHESLADVQAVCSQKNVACKNGQTNCYQSYSTMSITDCRETGSSKY      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1js0 KETAAAKFERQHMDSSTSAASSSNYCNQMMKSRNLTKDRCKPVNTFVHESLADVQAVCSQKNVACKNGQTNCYQSYSTMSITDCRETGSSKY DSSP LLLHHHHHHHHHLLLLLLLLLLLLHHHHHHHHLLLLLLLLLLEEEEELLLHHHHHHHHHLEEELLLLLLLLEEELLLLEEEEEEEELLLLLL DSSP LLLLEEEEEEEELLEEELLL..LLLLLLLLLlll 1f0v PNCAYKTTQANKHIIVACEG..NPYVPVHFDasv      ||||||||||||||||||||     | 1js0 PNCAYKTTQANKHIIVACEGnpYVPVHFDAS..v DSSP LLLLEEEEEEEELLEEELLLllLLLLLLLLL..l *Z-score 20.7  AR 121  RMSD 5.4A  SI 93%

Structural alignment by DaliLite

(3-4)

				Z-Score: 20.2 AR: 113 RMSD: 0.5A SI: 100%
1f0v A (len 124)	1kf3 A (len 124)		DaliLite result

site       *  * *                           +++++++                   *                  *       1f0v KETAAAKFERQHMDSSTSAASSSNYCNQMMKSRNLTKDRCKPVNTFVHESLADVQAVCSQKNVACKNGQTNCYQSYSTMSITDCRETGSSKY code --0QAAAAAAB000QBGR00R0QBQAAAAAAABRQBR000R000000RG0QAAAAAAABG00000QBR01R0000RG0000000000QB000 LCS    0QAAAAAAB000QB R00 0QBQAAAAAAABRQBR000R 00000RG0QAAAAAAABG00000QBR01R 000RG0000000000QB000 code --0QAAAAAAB000QB0R0000QBQAAAAAAABRQBR000RR00000RG0QAAAAAAABG00000QBR01RG000RG0000000000QB000 1kf3 KETAAAKFERQHMDSSTSAASSSNYCNQMMKSRNLTKDRCKPVNTFVHESLADVQAVCSQKNVACKNGQTNCYQSYSTMSITDCRETGSSKY site       *  * *                           +++++++                   *                  * site  1f0v PNCAYKTTQANKHIIVACEGNPYVPVHFDASV code QB0000000000000000000000000000-- LCS   B000000000000000000  00000000 code PB0000000000000000002R00000000-- 1kf3 PNCAYKTTQANKHIIVACEGNPYVPVHFDASV site                           * *RATIO :  lcs/trimmed_seq_a = 0.942 (=  113/  120), lcs/trimmed_seq_b = 0.942 (=  113/  120)

Structural alignment by ComSubstruct + manual inspection

DSSP LLLHHHHHHHHHLLLLLLLLLLLLHHHHHHHHLLLLLLLLLLEEEEELLLHHHHHHHHHLEEELLLLLLLLEEELLLLEEEEEEEELLLLLL 1f0v KETAAAKFERQHMDSSTSAASSSNYCNQMMKSRNLTKDRCKPVNTFVHESLADVQAVCSQKNVACKNGQTNCYQSYSTMSITDCRETGSSKY      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1kf3 KETAAAKFERQHMDSSTSAASSSNYCNQMMKSRNLTKDRCKPVNTFVHESLADVQAVCSQKNVACKNGQTNCYQSYSTMSITDCRETGSSKY DSSP LLLHHHHHHHHHLLLLLLLLLLLLHHHHHHHHLLLLLLLLLLEEEEELLLHHHHHHHHHLEEELLLLLLLLEEELLLLEEEEEEEELLLLLL DSSP LLLLEEEEEEEELLEEELLLLlllllllllll 1f0v PNCAYKTTQANKHIIVACEGNpyvpvhfdasv      |||||||||||||||||||||   1kf3 PNCAYKTTQANKHIIVACEGNpyvpvhfdasv DSSP LLLLEEEEEEEELEEEEEELLlleeeeeeeel *Z-score 20.2  AR 113  RMSD 0.5A  SI 100%

Structural alignment by DaliLite

(3-5)

				Z-Score: 20.0 AR: 114 RMSD: 1.1A SI: 100%
1js0 A (len 124)	1kf3 A (len 124)		DaliLite result

site       *  * *                           +++++++                   *                  * 1js0 KETAAAKFERQHMDSSTSAASSSNYCNQMMKSRNLTKDRCKPVNTFVHESLADVQAVCSQKNVACKNGQTNCYQSYSTMSITDCRETGSSKY code --0QAAAAAAG000QBGR00R0QBQAAAAAHABRQBR000RR00000RG0QAAAAAAABG00000QBR0RRG000R00000000000QB000 LCS    0QAAAAAA 000QB R00 0QBQAAAAA ABRQBR000RR00000RG0QAAAAAAABG00000QBR0 RG000R 0000000000QB000 code --0QAAAAAAB000QB0R0000QBQAAAAAAABRQBR000RR00000RG0QAAAAAAABG00000QBR01RG000RG0000000000QB000 1kf3 KETAAAKFERQHMDSSTSAASSSNYCNQMMKSRNLTKDRCKPVNTFVHESLADVQAVCSQKNVACKNGQTNCYQSYSTMSITDCRETGSSKY site       *  * *                           +++++++                   *                  * site                           * 1js0 PNCAYKTTQANKHIIVACEGNPYVPVHFDASV code PB0000000000000000003O000000R0-- LCS  PB000000000000000000  000000 0 code PB0000000000000000002R00000000-- 1kf3 PNCAYKTTQANKHIIVACEGNPYVPVHFDASV site                           * *RATIO :  lcs/trimmed_seq_a = 0.925 (=  111/  120), lcs/trimmed_seq_b = 0.925 (=  111/  120)

Structural alignment by ComSubstruct + manual inspection

DSSP LLLHHHHHHHHHLLLLLLLLLLLLHHHHHHHHLLLLLLLLLLEEEEELLLHHHHHHHHHLEEELLLLLLLLEEELLLLEEEEEEEELLLLLL 1js0 KETAAAKFERQHMDSSTSAASSSNYCNQMMKSRNLTKDRCKPVNTFVHESLADVQAVCSQKNVACKNGQTNCYQSYSTMSITDCRETGSSKY      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1kf3 KETAAAKFERQHMDSSTSAASSSNYCNQMMKSRNLTKDRCKPVNTFVHESLADVQAVCSQKNVACKNGQTNCYQSYSTMSITDCRETGSSKY DSSP LLLHHHHHHHHHLLLLLLLLLLLLHHHHHHHHLLLLLLLLLLEEEEELLLHHHHHHHHHLEEELLLLLLLLEEELLLLEEEEEEEELLLLLL DSSP LLLLEEEEEEEELLEEELLLLLllllllllll 1js0 PNCAYKTTQANKHIIVACEGNPyvpvhfdasv      |||||||||||||||||||||| 1kf3 PNCAYKTTQANKHIIVACEGNPyvpvhfdasv DSSP LLLLEEEEEEEELEEEEEELLLleeeeeeeel *Z-score 20.0  AR 114  RMSD 1.1A  SI 100%

Structural alignment by DaliLite

(4) Cluster 9

(4-1)

				Z-Score: 13.4 AR: 86 RMSD: 4.6A SI: 88%
1cm1 A (len 143)	1g4y R (len 147)		DaliLite result

site                    ************+                       ****   ********+                          * ** 1cm1    LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADG   NGTIDFPEFLTMMARK  MKDTDSEEEIREAFRVFD KD code    --QAAAAAAAAAAAAABQBRRRG00QAAAAAAAAABR0000QAAAAAAAAABGQB0   RRG00QAAAAAAAAB0  000R1GQGQAAAAAAAAB QB LCS       QAAAAAAAAAAA  BQBRRRG00QAAAAAAAAABR0000QAAAAAAAA B  B0   RRG00QAAA AAAAB0  000R  Q  AAAAAAAAB QB code --RG0QAAAAAAAAAAABHBQBRRRG00QAAAAAAAAABR0000QAAAAAAAA B  B00RRRRG00QAAAHAAAAB0RG000R  Q AAAAAAAAABRQB 1g4y ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMIN E  VDADGNGTIDFPEFLTMMARKMKDTDS  E EEIREAFRVFDKD site                    +++++++++++++                          +++++++++++++                           +++ site*********+                          ************+ 1cm1 GNGYISAAELRHVMTNLGEK  LTDEEVDEMIRE ADIDGDGQVNYEEFVQMMT code RRRG00QAAAAAAAAAB000  00QAAAAAAAAA BG0B0RRG00QAAAAAA-- LCS  RRRG00QAAAAAAA  B000  00QAAAAAAAAA B  B RRG0 QAAAAAA code RRRG00QAAAAAAA  B000R000QAAAAAAAAAABQ BRRRG0RQAAAAAAA-- 1g4y GNGYISAAELRHVM  TNLGEKLTDEEVDEMIREADI DGDGQVNYEEFVQMMTA site++++++++++                         ++ +++++++++++ *RATIO :  lcs/trimmed_seq_a = 0.885 (=  123/  139), lcs/trimmed_seq_b = 0.860 (=  123/  143)

Structural alignment by ComSubstruct + manual inspection

DSSP ...LLHHHHHHHHHHHHHHLLLLLLLLLHHHHHHHHHHLLLLLLHHHHHHHHHHHLLLLLLLLLHHHHHHHHHLLlLLLL...................lllhhhhhhhhhLLL 1cm1 ...LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKmKDTD...................seeeireafrvfDKD         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  1g4y adqLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKmKDTDseeeireafrvfdkdgngyisaaelrhvmtnLGE DSSP lllLLHHHHHHHHHHHHHHLLLLLLLLLHHHHHHHHHHLLLLLLHHHHHHHHHHLLLLLLLLLLLLHHHHHHHLLlLLLLlhhhhhhhhhlllllllleeehhhhhhhhllLLL DSSP LLLeelhhhhhhhhhhllllllhhhhhhhhhhhllLLLL......leehhhhhhhhl 1cm1 GNGyisaaelrhvmtnlgekltdeevdemireadiDGDG......qvnyeefvqmmt       1g4y KLT........................deevdemiREADidgdgqvnyeefvqmmta DSSP LLL........................hhhhhhhhHHHLllllleeehhhhhhhhhl *Z-score 13.4  AR 86  RMSD 4.6A  SI 88%

Structural alignment by DaliLite

(4-2)

				Z-Score: 13.6 AR: 82 RMSD: 2.9A SI: 89%
1g4y R (len 147)	1lin (len 146)		DaliLite result

site                    +++++++++++++                          +++++++++++++ 1g4y ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMIN E  VDADGNGTIDFPEFLTMMARKMKDTDS   EEEIREAFRV code --RG0QAAAAAAAAAAABHBQBRRRG00QAAAAAAAAABR0000QAAAAAAAA B  B00RRRRG00QAAAHAAAAB0RG000R   QAAAAAAAAA  LCS      0QAAAAAAAAAAA  BQBRRRG00QAAAAAAAAABR0000QAAAAAAAA B  B   RRRG00QAAA AAAAB  G000    QAAAAAAAAA  code   --0QAAAAAAAAAAAAABQBRRRG00QAAAAAAAAABR0000QAAAAAAAAABG1B   RRRG00QAAA AAAAB  G000QBB0QAAAAAAAAAA 1lin   QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDAD   GNGTIDFPEF LTMMA  RKMKDTDSEEEIREAFRVF site                    ************+                       ***   *********+                            site +++++++++++++                          ++ +++++++++++ 1g4y FDKDGNGYISAAELRHVM  TNLGEKLT DEEVDEMIREADI DGDGQVNYEEFVQMMTA code BRQBRRRG00QAAAAAAA  B000R000 QAAAAAAAAAABQ BRRRG0RQAAAAAAA-- LCS  B QBRRRG00QAAAAAAA  B   R000 QAAAAAAAAA B  BRRRG0 QAAAAAAA code B QBRRRG00QAAAAAAAAAB   R0000QAAAAAAAAA BG1BRRRG00QAAAAAAAB-- 1lin D KDGNGYISAAELRHVMTNL   GEKLTDEEVDEMIRE ADIDGDGQVNYEEFVQMMTAK site * ***********+                           ************+ *RATIO :  lcs/trimmed_seq_a = 0.874 (=  125/  143), lcs/trimmed_seq_b = 0.880 (=  125/  142)

Structural alignment by ComSubstruct + manual inspection

DSSP llLLLHHHHHHHHHHHHHHLLLLLLLLLHHHHHHHHHHLLLLLLHHHHHHHHHHLLLLLLLLLLLLHHHHHHHLLlLLLL........................................ 1g4y adQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKmKDTD........................................        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1lin ..QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARK.MKDTdseeeireafrvfdkdgngyisaaelrhvmtnlgekltde DSSP ..LLLHHHHHHHHHHHHHHLLLLLLEELHHHHHHHHHHLLLLLLHHHHHHHHHHHLLLLLLLEEHHHHHHHHHLL.LLLLllhhhhhhhhhhhlllllleelhhhhhhhhhhllllllhh DSSP ...............lHHHHHhhhhlllllllleeehhhhhhhhllllllllhhhhhhhhhhhlllllleeehhhhhhhhhl 1g4y ...............sEEEIReafrvfdkdgngyisaaelrhvmtnlgekltdeevdemireadidgdgqvnyeefvqmmta       1lin evdemireadidgdgqVNYEE.....................................................fvqmmtak DSSP hhhhhhhhhlllllllEEHHH.....................................................hhhhhlll *Z-score 13.6  AR 82  RMSD 2.9A  SI 89%

Structural alignment by DaliLite

(5) Cluster 10

			No Significant Similarity	Z-Score: - AR: - RMSD: -A SI: -%
1d2z C res78-129 (len 52)	1ik7 A (len 52)		DaliLite result

site  1d2z RGRSASNEFLNIWGGQYNHTVQTLFALFKKLKLHNAMRLIKDYVSEDLHKYI code --00QAAAAAAGAAB8BR00QAAAAAAAAABRRQAAAAABQABG0QAAAA-- LCS       AAAAAA AA       AAAAAAAAA    AAAAA  A    AAAA code --AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-- 1ik7 RGRSASNEFLNIWGGQYNHTVQTLFALFKKLKLHNAMRLIKDYVSEDLHKYI site *RATIO :  lcs/trimmed_seq_a = 0.562 (=   27/   48), lcs/trimmed_seq_b = 0.562 (=   27/   48)

Structural alignment by ComSubstruct + manual inspection

DSSP  1d2z       1ik7 DSSP *Z-score -  AR -  RMSD -A  SI -%

Structural alignment by DaliLite

[The DSSP code]

• H = alpha helix
• B = residue in isolated beta-bridge
• E = extended strand, participates in beta ladder
• G = 3-helix (3/10 helix)
• I = 5 helix (pi helix)
• T = hydrogen bonded turn
• S = bend
• L = no assigned structure

[The 5-tile code]

• 0 = DDDDD    (extended strand, small blue spheres)
• 1 = DDDDU
• 2 = DDDUD
• 3 = DDDUU
• 8 = DUDDD
• 9 = DUDDU
• A = DUDUD    (helix, large red spheres)
• B = DUDUU    (turn, large yellow spheres)
• G = UDDDD
• H = UDDDU
• I = UDDUD
• J = UDDUU
• O = UUDDD
• P = UUDDU
• Q = UUDUD    (turn, large yellow spheres)
• R = UUDUU    (turn, large yellow spheres)