[From cluster 16 to cluster 20]


(1) Cluster 16

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   Z-Score: 22.8
AR: 238
RMSD: 8.3A
SI: 100%
1fgu A (len 246) 1jmc A (len 238)
DaliLite result

site 
1fgu MSKVVPIASLTPYQ SKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFT
code --R000QABG00R0 R00000000R0000000000QB000000000000QB000000000QAAAG1QABG00RG000000000000RQAJ0

LCS      00QAB 00   R 000 000R0000000000  000000000000Q 000000000QAAA 1QABG00RG000000000000RQA
code   --00QAB 00QBGRG000R000R0000000000R0000000000000QG000000000QAAAB1QABG00RG000000000000RQA
1jmc   KVVPIAS LTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQ
site 

site 
1fgu AVK  NDYEMTFNNETSVMPCEDDHH LPTVQFDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATL
code RGR  0RG00000QBG00000R0RRR 00R000R000QAAQABG00R000000000R0000000000QB0R000000000000QBR0000000

LCS   GR  0R 00000QBG00000 0R   00 000R000QAA ABG00R00000000 R0000000000QB0R000000000000QBR0000000
code GGRG00R000000QBG00000 0RQBO000000R000QAAAABG00R00000000RR0000000000QB0R000000000000QBR0000000
1jmc FTAVKNDYEMTFNNETSVMPC EDDHHLPTVQFDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATL
site 

site 
1fgu WGEDADKFDGSRQPVLAIKGARVSDFGG  RSLSVLSSSTIIANPDI  PEAYKLRGWFDAEGQALDGVS
code 00QAAAB00R0R0000000R0000RGR0  000000QBG0000R0R0  QAAAAAAAAAAB0QB0000--

LCS  00QAA B00R0R 000000R0000R  0  000000QBG000 R0 0  QAAAAAAAAA B0Q
code 00QAAGB00R0RR000000R0000R  0RR000000QBG000 R0 0RGQAAAAAAAAA B0Q--
1jmc WGEDADKFDGSRQPVLAIKGARVSD  FGGRSLSVLSSSTII AN PDIPEAYKLRGWF DAEGQ
site 


*RATIO :  lcs/trimmed_seq_a = 0.864 (=  209/  242), lcs/trimmed_seq_b = 0.893 (=  209/  234)
Structural alignment by ComSubstruct + manual inspection
DSSP llLLLLHHHLLLLLLLLEEEEEEEEELLLEEEEELLEEEEEEEEEEELLLLEEEEEEEHHHHHHHHHHLLLLLEEEEELLEEEELLHHHL
1fgu msKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFT
       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1jmc ..KVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFT
DSSP ..LLLLHHHLLLLLLLLEEEEEEEEELLLEEEELLLLEEEEEEEEEELLLLEEEEEEEHHHHHHHHHHLLLLLEEEEELLEEEELLHHHL


DSSP LLLLLEEEELLLLLEEEELLLLLLLLLLLLLLLLHHHHHHLLLLLEEEEEEEEEEELLLEEEELLLLLLEEEEEEEEEELLLLLEEEEEE
1fgu AVKNDYEMTFNNETSVMPCEDDHHLPTVQFDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATL
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1jmc AVKNDYEMTFNNETSVMPCEDDHHLPTVQFDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATL
DSSP LLLLLEEEELLLLLEEEELLLLLLLLLLLLLLLLHHHHHHLLLLLEEEEEEEEEEELLLEEEEELLLLEEEEEEEEEEELLLLLEEEEEE


DSSP EHHHHHHLLLLLLLEEEEEEEEEELLLLLEEELLLLLEEEELLLLHHHHHHHHHHHHHLLllllll
1fgu WGEDADKFDGSRQPVLAIKGARVSDFGGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQaldgvs
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1jmc WGEDADKFDGSRQPVLAIKGARVSDFGGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQ......
DSSP EHHHHHHLLLLLLLEEEEEEEEEELLLLLEEELLLLLEEELLLLLHHHHHHHHHHHHLLL......


*Z-score 22.8  AR 238  RMSD 8.3A  SI 100%
Structural alignment by DaliLite


(2) Cluster 17

(2-1)
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   Z-Score: 26.9
AR: 199
RMSD: 2.0A
SI: 96%
1fm6 A (len 232) 1g1u B (len 229)
DaliLite result

site 
1fm6 NEDMPVERILEAELAVEPKTET  YVEANMGL    NPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHR
code --R00QAAAAAAAAB00000QA  BHQ00000    000R00G2AAAAAAAAAAAAAAAAAAAABG0RQABG0QAAAAAAAAB1QAAAAAAAAAAA

LCS        AAAAAAAAB0000 QA  B  0        000 00   AAAAAAAAAAAAAAAAAAABG0RQABG0QAAAAAAAAB1QAAAAAAAAAAA
code     --AAAAAAAAB0000 QAAAB  01RRQBBGR000 00Q  AAAAAAAAAAAAAAAAAAABG0RQABG0QAAAAAAAAB1QAAAAAAAAAAA
1g1u     PVERILEAELAVEPK TETYV  EANMGLNPSSPN DPV  TNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHR
site

site 
1fm6 SIAVKDGILLATGLHVHRNSAHSAGVGA IFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKH
code AQBG000000QBR00001AAAAABRR0Q AAAAAA0B0QAAAAABR00QAAAAAAAAAAAB0QB00R0R0QAAAAAAAAAAAAAAAAAAAA

LCS  AQBG0 0000QBR0000 AAAAABRR Q AAAAAA0B0QAAAAABR00QAAAAAAAAAAAB0QB 0R0R0QAAAAAAAAAAAAAAAAAAAA
code AQBG0G0000QBR0000QAAAAABRR QAAAAAAA0B0QAAAAABR00QAAAAAAAAAAAB0QBG0R0R0QAAAAAAAAAAAAAAAAAAAA
1g1u SIAVKDGILLATGLHVHRNSAHSAGV GAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKH
site 

site 
1fm6 KYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTF      LMEM LEAP
code B0QBGQBQAAAAAAAAAAAAAAAAAAAAAAAAAABB00R0001Q      AAAA BR--

LCS  B0Q GQBQAAAAAAAAAAAAAAAAAAAA   AAABB      1Q      AAAA B
code B0QAGQBQAAAAAAAAAAAAAAAAAAAABRQAAABB      1QAAAAAAAAAAABG--
1g1u KYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLI      GDTPIDTFLMEMLEAPH
site 


*RATIO :  lcs/trimmed_seq_a = 0.868 (=  198/  228), lcs/trimmed_seq_b = 0.880 (=  198/  225)
Structural alignment by ComSubstruct + manual inspection
DSSP llllLHHHHHHHHHLLLLLLLHHHH.lllLLLLLLLllllhhhhHHHHHHHHHHHHHHHHLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHH
1fm6 nedmPVERILEAELAVEPKTETYVE.anmGLNPSSPndpvtnicQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHR
         |||||||||||||||||||||        |          |||||||||||||||||||||||||||||||||||||||||||||||
1g1u ....PVERILEAELAVEPKTETYVEanmgLNPSSPN.dpvtnicQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHR
DSSP ....LHHHHHHHHHHLLLLLLLLLLllllLLLLLLL.lhhhhhhHHHHHHHHHHHHHHLLLLLHHHLLHHHHHHHHHHHHHHHHHHHHHHH


DSSP LLLLLLEEELLLLLEEEHHHHHLLLLLLHHHHHHHHLHHHHHHLLLLHHHHHHHHHHHHLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHH
1fm6 SIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKH
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1g1u SIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKH
DSSP HHHLLLLEELLLLLEELHHHHHHLLLHHHHHHHHHHLHHHHHHHLLLHHHHHHHHHHHHLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHH


DSSP HLLLLLLHHHHHHLLHHHHHHHHHHHHHHH....hhhhllLLLLllllhhhhllll
1fm6 KYPEQPGRFAKLLLRLPALRSIGLKCLEHL....fffkliGDTPidtflmemleap
     ||||||||||||||||||||||||||||||           ||
1g1u KYPEQPGRFAKLLLRLPALRSIGLKCLEHLfffkligdtpIDTF...lmemleaph
DSSP HLLLLLLHHHHHHLLHHHHHHHHHHHHHLLhhhhhhhhhhHHHH...hhhhhhlll


*Z-score 26.9  AR 199  RMSD 2.0A  SI 96%
Structural alignment by DaliLite

(2-2)
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   Z-Score: 27.8
AR: 200
RMSD: 1.8A
SI: 97%
1fm6 A (len 232) 1g1u C (len 226)
DaliLite result

site 
1fm6 NEDMPVERILEAELAVEPKTE TYVEANMGLN PSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIA SFSHR
code --R00QAAAAAAAAB00000Q ABHQ000000 00R00G2AAAAAAAAAAAAAAAAAAAABG0RQABG0QAAAAAAAAB1QAAAAAA AAAAA

LCS        AAAAAAAAB0 0    AB  0      00 00   AAAAAAAAAAAAAAAAAAABG0RQABG0QAAAAAAAAB1QAAAAAA AAAAA
code    --AAAAAAAAAB0R01AAAAB1B0RQGRGR00 00Q  AAAAAAAAAAAAAAAAAAABG0RQABG0QAAAAAAAAB1QAAAAAAHAAAAA
1g1u    PVERILEAELAVEPKTETYVEANMGLNPSSPN DPV  TNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRS
site

site 
1fm6 SIAVKDGILLATGLHVHRNSAHSAGV GAIFDRVLT ELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKH
code AQBG000000QBR00001AAAAABRR 0QAAAAAA0 B0QAAAAABR00QAAAAAAAAAAAB0QB00R0R0QAAAAAAAAAAAAAAAAAAAA

LCS  A BG000000QBR0000  AA  BRR 0QAAAAAA  B0QAAAAABR00QAAAAAAAAAAAB0QB00 0R0QAAAAAAAAAAAAAAAAAAAA
code A BG000000QBR00000QAA  BRRG0QAAAAAAAAB0QAAAAABR00QAAAAAAAAAAAB0QB00O0R0QAAAAAAAAAAAAAAAAAAAA
1g1u I AVKDGILLATGLHVHRNSA  HSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKH
site 

site 
1fm6 KYPEQPGRFAKLLLRLPALRSIGLKCLEHL FFFKLIGDTPIDTFLMEMLEAP
code B0QBGQBQAAAAAAAAAAAAAAAAAAAAAA AAAABB00R0001QAAAABR--

LCS   0Q GQBQAAAAAAAAAAAAAAAAAAAA   AAAAB       1QAAAA
code A0QAGQBQAAAAAAAAAAAAAAAAAAAABRQAAAAB       1QAAAAAAAAAA--
1g1u KYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLI       GDTPIDTFLMEMLE
site 


*RATIO :  lcs/trimmed_seq_a = 0.829 (=  189/  228), lcs/trimmed_seq_b = 0.851 (=  189/  222)
Structural alignment by ComSubstruct + manual inspection
DSSP llllLHHHHHHHHHLLLLLLLHHHHLLLLL..LLLLLLlllhhhHHHHHHHHHHHHHHHHHLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHH
1fm6 nedmPVERILEAELAVEPKTETYVEANMGL..NPSSPNdpvtniCQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHR
         ||||||||||||||||||||||||||              ||||||||||||||||||||||||||||||||||||||||||||||||
1g1u ....PVERILEAELAVEPKTETYVEANMGLnpSSPNDP..vtniCQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHR
DSSP ....LLHHHHHHHHHLLLLLHHHHHHLLLLllLLLLLH..hhhhHHHHHHHHHHHHHHHHHLLLHHHLLHHHHHHHHHHHHHHHHHHHHHHH


DSSP LLLLLLEEELLLLLEEEHHHHHLLLLLLHHHHHHHHLHHHHHHLLLLHHHHHHHHHHHHLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHH
1fm6 SIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKH
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1g1u SIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKH
DSSP LLLLLLEEELLLLLEEEHHHHHLLLLHHHHHHHHHHLHHHHHHLLLLHHHHHHHHHHHHLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHH


DSSP HLLLLLLHHHHHHLLHHHHHHHHHHHHHHHhhhhllllllllllhhhhllll
1fm6 KYPEQPGRFAKLLLRLPALRSIGLKCLEHLfffkligdtpidtflmemleap
     ||||||||||||||||||||||||||||||  
1g1u KYPEQPGRFAKLLLRLPALRSIGLKCLEHL..fffkligdtpidtflmemle
DSSP HLLLLLLHHHHHHLLHHHHHHHHHHHHHLL..hhhhhllhhhhhhhhhhhhl


*Z-score 27.8  AR 200  RMSD 1.8A  SI 97%
Structural alignment by DaliLite

(2-3)
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   Z-Score: 27.4
AR: 205
RMSD: 2.2A
SI: 96%
1fm6 A (len 232) 1g5y A (len 228)
DaliLite result

site                                                                                                            
1
fm6 NEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNIC            QA A    DKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHR
code --R00QAAAAAAAAB00000QABHQ00000000R00G2AAAAA            AA A    AAAAAAAAAAAABG0RQABG0QAAAAAAAAB1QAAAAAAAAAAA

LCS        AAAAAAAAQ       Q          R0   AAAAA            AA A    AAAAAAAAAAAAQG0RQAQG0QAAAAAAAAQ1QAAAAAAAAAAA
code     --AAAAAAAAB       B         RR01Q AAAAAB00RG1RRRRG1AAHAHBHQAAAAAAAAAAAABG0RQABG0QAAAAAAAAB1QAAAAAAAAAAA
1g5y     PVERILEAELA       V         EPKTE TYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHR
site

site 
1fm6 SIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVL TELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKH
code AQBG000000QBR00001AAAAABRR0QAAAAAA 0B0QAAAAABR00QAAAAAAAAAAAB0QB00R0R0QAAAAAAAAAAAAAAAAAAAA

LCS  AQBG0  000QBR0000 AAAAAQRR QAAAAAA 0Q0QAAAAAQR00QAAAAAAAAAAAQ0QB00 0R0QAAAAAAAAAAAAAAAAAAAA
code AQBG0RG000QBR0000QAAAAABRR QAAAAAAA0B0QAAAAABR00QAAAAAAAAAAAB0QB0000R0QAAAAAAAAAAAAAAAAAAAA
1g5y SIAVKDGILLATGLHVHRNSAHSAGV GAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKH
site 

site 
1fm6 KYPEQPGRFAKLLLRLPALRSIGLKCLE   HLFFFKLIGDTPIDTFLMEM LEAP
code B0QBGQBQAAAAAAAAAAAAAAAAAAAA   AAAAAABB00R0001QAAAA BR--

LCS  Q0QBGQBQAAAAAAAAAAAAAAAAAAAA   AAAA  Q 0      QAAAA Q
code B0QBGQBQAAAAAAAAAAAAAAAAAAAABRQAAAA  B 0QAAAAGQAAAAAB--
1g5y KYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKL  I GDTPIDTFLMEMLEAP
site 


*RATIO :  lcs/trimmed_seq_a = 0.829 (=  189/  228), lcs/trimmed_seq_b = 0.844 (=  189/  224)
Structural alignment by ComSubstruct + manual inspection
DSSP llllLHHHHHHHHHLLLLLLLHHHHLLLLLLLL.LLLLllhhhHHHHHHHHHHHHHHHHHLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHH
1fm6 nedmPVERILEAELAVEPKTETYVEANMGLNPS.SPNDpvtniCQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHR
         |||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||
1g5y ....PVERILEAELAVEPKTETYVEANMGLNPSsPNDP.vtniCQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHR
DSSP ....LLLLLLLLLLLLLLLLHHHHHHLLLLLLLlLLLL.hhhhHHLLHHHHHHHHHHHHHLLLHHHLLHHHHHHHHHHHHHHHHHHHHHHH


DSSP LLLLLLEEELLLLLEEEHHHHHLLLLLLHHHHHHHHLHHHHHHLLLLHHHHHHHHHHHHLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHH
1fm6 SIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKH
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1g5y SIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKH
DSSP HHHLLLEEELLLLLEEEHHHHHHLLLHHHHHHHHHHLHHHHHHLLLLHHHHHHHHHHHHLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHH


DSSP HLLLLLLHHHHHHLLHHHHHHHHHHHHHHH.hhhhllLLLLllllhhhhllll
1fm6 KYPEQPGRFAKLLLRLPALRSIGLKCLEHL.fffkliGDTPidtflmemleap
     ||||||||||||||||||||||||||||||
1g5y KYPEQPGRFAKLLLRLPALRSIGLKCLEHLfffkligDTPI.dtflmemleap
DSSP HLLLLLLHHHHHHLLHHHHHHHHHHHHHLLhhhhhllLHHH.hhhhhhhllll


*Z-score 27.4  AR 205  RMSD 2.2A  SI 96%
Structural alignment by DaliLite

(2-4)
jpg image jpg image
jpg image
   Z-Score: 28.3
AR: 202
RMSD: 2.0A
SI: 99%
1fm6 A (len 232) 1g5y B (len 229)
DaliLite result

site 
1
fm6 NEDMPVERILEAELAVEPKT ET YVE AN  MGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHR
code --R00QAAAAAAAAB00000 QA BHQ 00  000000R00G2AAAAAAAAAAAAAAAAAAAABG0RQABG0QAAAAAAAAB1QAAAAAAAAAAA

LCS        AAAAAAAA   0 0 QA BHQ 00     000 00  AAAAAAAAAAAAAAAAAAA BG0RQABG0QAAAAAAAAB1QAAAAAAAAAAA
code     --AAAAAAAAG  0G0RQAABHQG001RG1R000 00Q AAAAAAAAAAAAAAAAAAA BG0RQABG0QAAAAAAAAB1QAAAAAAAAAAA
1g5y     PVERILEAELA  VEPKTETYVEANMGLNPSSPN DPV TNICQAADKQLFTLVEWAK RIPHFSELPLDDQVILLRAGWNELLIASFSHR
site

site 
1fm6 SIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVL TELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKH
code AQBG000000QBR00001AAAAABRR0QAAAAAA 0B0QAAAAABR00QAAAAAAAAAAAB0QB00R0R0QAAAAAAAAAAAAAAAAAAAA

LCS  AQBG000000QBR0000 AAAAABRR QAAAAAA 0B0QAAAAABR00QAAAAAAAAAAAB0QB 0R0R0QAAAAAAAAAAAAAAAAAAAA
code AQBG000000QBR0000QAAAAABRR QAAAAAAA0B0QAAAAABR00QAAAAAAAAAAAB0QBG0R0R0QAAAAAAAAAAAAAAAAAAAA
1g5y SIAVKDGILLATGLHVHRNSAHSAGV GAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKH
site 

site 
1fm6 KYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM       LEAP
code B0QBGQBQAAAAAAAAAAAAAAAAAAAAAAAAAABB00R0001QAAAA       BR--

LCS  B0Q GQBQAAAAAAAAAAAAAAAAAAAA   AAAB      01QAAAA       B
code B0QAGQBQAAAAAAAAAAAAAAAAAAAABRQAAAB      01QAAAAAAAAAAABG--
1g5y KYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKL      IGDTPIDTFLMEMLEAPH
site 


*RATIO :  lcs/trimmed_seq_a = 0.873 (=  199/  228), lcs/trimmed_seq_b = 0.884 (=  199/  225)
Structural alignment by ComSubstruct + manual inspection
DSSP llllLHHHHHHHHHLLLLLLLHHHHLLLLLLLLLLllllhhhhHHHHHHHHHHHHHHHHLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHH
1fm6 nedmPVERILEAELAVEPKTETYVEANMGLNPSSPndpvtnicQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHR
         |||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||
1g5y ....PVERILEAELAVEPKTETYVEANMGLNPSSPndpvtnicQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHR
DSSP ....LHHHHHHHHHHLLLHHHHHHHLLLLLLLLLLlllhhhhhHHHHHHHHHHHHHHHHLLLHHHLLHHHHHHHHHHHHHHHHHHHHHHH


DSSP LLLLLLEEELLLLLEEEHHHHHLLLLLLHHHHHHHHLHHHHHHLLLLHHHHHHHHHHHHLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHH
1fm6 SIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKH
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1g5y SIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKH
DSSP HHHLLLLEELLLLLEELHHHHHHLLLHHHHHHHHHHLHHHHHHHLLLHHHHHHHHHHHHLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHH


DSSP HLLLLLLHHHHHHLLHHHHHHHHHHHHHHH....hhhhllLLLLllllhhhhllll
1fm6 KYPEQPGRFAKLLLRLPALRSIGLKCLEHL....fffkliGDTPidtflmemleap
     ||||||||||||||||||||||||||||||           ||
1g5y KYPEQPGRFAKLLLRLPALRSIGLKCLEHLfffkligdtpIDTF...lmemleaph
DSSP HLLLLLLHHHHHHLLHHHHHHHHHHHHHLLhhhhhhhhhhHHHH...hhhhhhlll


*Z-score 28.3  AR 202  RMSD 2.0A  SI 99%
Structural alignment by DaliLite

(2-5)
jpg image jpg image
jpg image
   Z-Score: 26.6
AR: 205
RMSD: 2.1A
SI: 96%
1fm6 A (len 232) 1g5y D (len 229)
DaliLite result

site 
1
fm6 NEDMPVERILEAELAVEPKTET YVEANMGLNPSS   PNDP VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHR
code --R00QAAAAAAAAB00000QA BHQ00000000R   00G2 AAAAAAAAAAAAAAAAAAAABG0RQABG0QAAAAAAAAB1QAAAAAAAAAAA

LCS        AAAAAAAA  000 QA B         0R   0 G  AAAAAAAAAAAAAAAAAAAABG0RQABG0QAAAAAAAAB1QAAAAAAAAAAA
code     --AAAAAAAAAG000 QAAB1AABB    0RG1R0RG0QAAAAAAAAAAAAAAAAAAAABG0RQABG0QAAAAAAAAB1QAAAAAAAAAAA
1g5y     PVERILEAELAVEPK TETYVEANM    GLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHR
site

site 
1fm6 SIAVK  DGILLATG LHVHRNSAHSAGVGAIFDRVLT ELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKH
code AQBG0  00000QBR 00001AAAAABRR0QAAAAAA0 B0QAAAAABR00QAAAAAAAAAAAB0QB00R0R0QAAAAAAAAAAAAAAAAAAAA

LCS  A BG0  00000  R 000  AAAAABRR QAAAAAA  B0QAAAAABR00QAAAAAAAAAAAB0QB00R0R0QAAAAAAAAAAAAAAAAAAA
code AABG0RG00000  R3000Q AAAAABRR QAAAAAAAAB0QAAAAABR00QAAAAAAAAAAAB0QB00R0R0QAAAAAAAAAAAAAAAAAAAG
1g5y SIAVKDGILLAT  GLHVHR NSAHSAGV GAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKH
site 

site 
1fm6 KYPEQPGRFAKLLLRLPALRSIGLKCLE HLFFFKLIGDTPIDTFLMEM       LEAP
code B0QBGQBQAAAAAAAAAAAAAAAAAAAA AAAAAABB00R0001QAAAA       BR--

LCS  B0Q GQBQAAAAAAAAAAAAAAAAAAAA   AAAAB 0      QAAAA       B
code B0QAGQBQAAAAAAAAAAAAAAAAAAAABRQAAAAB 0      QAAAAAAAAAAABG--
1g5y KYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLI G      DTPIDTFLMEMLEAPH
site 


*RATIO :  lcs/trimmed_seq_a = 0.838 (=  191/  228), lcs/trimmed_seq_b = 0.849 (=  191/  225)
Structural alignment by ComSubstruct + manual inspection
DSSP llllLHHHHHHHHHLLLLLLLHHHHLLLLLLLLLLLlllhHHHHHHHHHHHHHHHHHHHLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHH
1fm6 nedmPVERILEAELAVEPKTETYVEANMGLNPSSPNdpvtNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHR
         ||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||
1g5y ....PVERILEAELAVEPKTETYVEANMGLNPSSPNdpvtNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHR
DSSP ....LHHHHHHHHHLLLLLLHHHHHHHHLLLLLHHHlllhHHHHHHHHHHHHHHHHHHLLLLHHHLLHHHHHHHHHHHHHHHHHHHHHHH


DSSP LLLLLLEEELlLLLE.EEHHHHHLLLLLLHHHHHHHHLHHHHHHLLLLHHHHHHHHHHHHLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHH
1fm6 SIAVKDGILLaTGLH.VHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKH
     ||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1g5y SIAVKDGILL.ATGLhVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKH
DSSP HHHLLLLLLL.LLLLlLLHHHHHHLLLHHHHHHHHHHLHHHHHHLLLLHHHHHHHHHHHHLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHH


DSSP HLLLLLLHHHHHHLLHHHHHHHHHHHHHHH.hhhhllLLLLllllhhhhllll
1fm6 KYPEQPGRFAKLLLRLPALRSIGLKCLEHL.fffkliGDTPidtflmemleap
     |||||||||||||||||||||||||||||| 
1g5y KYPEQPGRFAKLLLRLPALRSIGLKCLEHLfffkligDTPIdtflmemleaph
DSSP HLLLLLLHHHHHHLLHHHHHHHHHHHHHHLhhhhhhlLHHHhhhhhhhhllll


*Z-score 26.6  AR 205  RMSD 2.1A  SI 96%
Structural alignment by DaliLite


(3) Cluster 18

(3-1)
jpg image jpg image
jpg image
   Z-Score: 28.4
AR: 213
RMSD: 1.8A
SI: 99%
1fsg A (len 233) 1qk3 A (len 228)
DaliLite result

site 
1fsg GSHMASKPIEDYGKGKGRIEPMYIPDNTFYNADDFLVPPHCK PYIDKILLPGGLVKDRVEKLAYDIHRTYFGEELHIIC ILKGS RGFFNL
code --QABG00QAB0RRR0R000000000R0000QABG000QABQ BG0000R00QAAAAAAAAAAAAAAAAB00RGR00000 00OHB QAAAAA

LCS       G00QAB0RRR0R0 0000000R0000QABG000QABQ BG 000 00QAAAAAAAAAAAAAAAA 00RG 00000 00  B Q  AAA
code    --G00QAB0RRR0R0R0000000R0000QABG000QABQABGR000 00QAAAAAAAAAAAAAAAAA00RG000000R000QB0Q  AAA
1qk3    MASKPIEDYGKGKGRIEPMYIPDNTFYNADDFLVPPHCKPYIDKIL LPGGLVKDRVEKLAYDIHRTYFGEELHIICILKGSRGF  FNL
site

site                                                                +++++++++++++
1fsg LIDYLATIQKYSG    RESSVPPFFEHYVR LKSYQNDNSTGQLT  VLSDD   LSIFRDKHVLIVEDIVDTGFTLTEFGERLKAVGPKSMRIATLVE
code AAAAAAAAAAB0R    G00RG0R0000000 000003RG0RRG00  00000   QAAB0R0000000R000RRQAAAAAAAAAAAB00R000000R00

LCS  AAAAAAAAA B0R    G00  0 0000000 00000 R 0   00  00000   Q AB0R0 00000R000RRQAAAAAAAAAAAB00R000000R00
code AAAAAAAAA B0RQGQAG00  0 0000000R00000 R 0   00RG00000RGRQ AB0R0O00000R000RRQAAAAAAAAAAAB00R000000R00
1qk3 LIDYLATIQ KYSGRESSVP  P FFEHYVRLKSYQN D N   STGQLTVLSDDLS IFRDKHVLIVEDIVDTGFTLTEFGERLKAVGPKSMRIATLVE
site                                                                +++++++++++++

site                                 *
1fsg K RTDRSN  S LKGDFVGFSIEDVWIVGCCYDFNEM   FRDF  DHVAVLSDAARKKFEK
code 0 00QBGR  R 000R0000000R00001RR000RRG   RQBG  RG00000QAAAAB0--

LCS  0 0    R  R 000R0000000R0000   00  RG   RQB   RG00000QAAAA
code 0R0    RG0R0000R0000000R0000   00  RG00RRQBQB0RG00000QAAAA--
1qk3 KRT    DRSNSLKGDFVGFSIEDVWIV   GC  CYDFNEMFRDFDHVAVLSDAARKKF
site                                      *


*RATIO :  lcs/trimmed_seq_a = 0.847 (=  194/  229), lcs/trimmed_seq_b = 0.866 (=  194/  224)
Structural alignment by ComSubstruct + manual inspection
DSSP llhHHLLLHHHLLLLLLLLLLEELLLLLLEEHHHLLLLLLLLLLLLEEEELHHHHHHHHHHHHHHHHHHHLLLLEEEEEEELLLHHHHHH 
1fsg gshMASKPIEDYGKGKGRIEPMYIPDNTFYNADDFLVPPHCKPYIDKILLPGGLVKDRVEKLAYDIHRTYFGEELHIICILKGSRGFFNL
        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1qk3 ...MASKPIEDYGKGKGRIEPMYIPDNTFYNADDFLVPPHCKPYIDKILLPGGLVKDRVEKLAYDIHRTYFGEELHIICILKGSRGFFNL
DSSP ...LLLLLHHHLLLLLLLLLLEELLLLLLEEHHHLLLLHHHHHHLLEELLLHHHHHHHHHHHHHHHHHHHLLLLEEEEEELLLLLLHHHH


DSSP HHHHHHHHHHHLLLL.LLLLlLEEEEEEEeeeelleeeeeeeeELLLHHHHLLLEEEEEEEEELLLHHHHHHHHHHHLLLLLEEEEEEEEE
1fsg LIDYLATIQKYSGRE.SSVPpFFEHYVRLksyqndnstgqltvLSDDLSIFRDKHVLIVEDIVDTGFTLTEFGERLKAVGPKSMRIATLVE
     ||||||||||||||| |  | ||||||||              ||||||||||||||||||||||||||||||||||||||||||||||||
1qk3 LIDYLATIQKYSGREsSVPP.FFEHYVRLksyqndnstgqltvLSDDLSIFRDKHVLIVEDIVDTGFTLTEFGERLKAVGPKSMRIATLVE
DSSP HHHHHHHHHHLLLLLlLLLL.LEEEEELLllllllllllllleELLLLHHHLLLEEEEEEEEELLLHHHHHHHHHHHLLLLLEEEEEEEEE


DSSP ELLLLLLLLLLLEEEEEELLLLEELLLLLLLLLLLLLLLEEELLHHHHHHHll
1fsg KRTDRSNSLKGDFVGFSIEDVWIVGCCYDFNEMFRDFDHVAVLSDAARKKFek
     |||||||||||||||||||||||||||||||||||||||||||||||||||
1qk3 KRTDRSNSLKGDFVGFSIEDVWIVGCCYDFNEMFRDFDHVAVLSDAARKKF..
DSSP EELLLLLLLLLLEEEEEEELLLEELLLLLLLLLLLLLLLLEELLHHHHHHL..


*Z-score 28.4  AR 213  RMSD 1.8A  SI 99%
Structural alignment by DaliLite

(3-2)
jpg image jpg image
jpg image
   Z-Score: 28.1
AR: 215
RMSD: 1.9A
SI: 99%
1fsg A (len 233) 1qk3 B (len 231)
DaliLite result

site 
1fsg GSHMASKPIEDYGKGKGRIEPMYIPDNTFYNADDFLVPPHCK PYIDKILLPGGLVKDRVEKLAYDIHR TYFGEELHIICI LKG S RGFFNL
code --QABG00QAB0RRR0R000000000R0000QABG000QABQ BG0000R00QAAAAAAAAAAAAAAAA B00RGR000000 0OH B QAAAAA

LCS       G00QAB0RRR0R000000000R0000QABG000QAB  BG 00 R00QAAAAAAAAAAAAAAAA B0 RG 000000 0   B QAAAAA
code --00RG00QAB0RRR0R000000000R0000QABG000QABAABGR00 R00QAAAAAAAAAAAAAAAAAB0 RG 000000R000QB0QAAAAA
1qk3 GSHMASKPIEDYGKGKGRIEPMYIPDNTFYNADDFLVPPHCKPYIDKI LLPGGLVKDRVEKLAYDIHRTYF GE ELHIICILKGSRGFFNLLI
site

site                                                               +++++++++++++
1fsg LIDYLATIQKYSG     RESSVPPFFEHYV  RLKSYQNDNSTGQLTVLSDD  LSIFRDKHVLIVEDIVDTGFTLTEFGERLKAVGPKSMRIATLVE
code AAAAAAAAAAB0R     G00RG0R000000  0000003RG0RRG0000000  QAAB0R0000000R000RRQAAAAAAAAAAAB00R000000R00

LCS  AAAAAAAA  B R     G00  0 000000  000000 R  RR 000000   QA B0R0000000R000RRQAAAAAAAAAAAB00R000000R00
code AAAAAAAA  B RQABQBG00  0 000000RG000000 R  RR 000000RGRQA B0R0000000R000RRQAAAAAAAAAAAB00R000000R00
1qk3 DYLATIQK  Y SGRESSVPP  F FEHYVRLKSYQNDN S  TG QLTVLSDDLSI FRDKHVLIVEDIVDTGFTLTEFGERLKAVGPKSMRIATLVE
site                                                               +++++++++++++

site                                *
1fsg KRTDRSN  S LKGDFVGFSIEDVWIVGCCYDFNEM   FRDF  DHVAVLSDAARKKFEK
code 000QBGR  R 000R0000000R00001RR000RRG   RQBG  RG00000QAAAAB0--

LCS  000   R  R 000R0000000R0000   00  RG   RQB   RG00000QAAAA
code 000   RG0R0000R0000000R0000   00  RG00RRQBQB0RG00000QAAAA--
1qk3 KRT   DRSNSLKGDFVGFSIEDVWIV   GC  CYDFNEMFRDFDHVAVLSDAARKKF
site                                     *


*RATIO :  lcs/trimmed_seq_a = 0.856 (=  196/  229), lcs/trimmed_seq_b = 0.863 (=  196/  227)
Structural alignment by ComSubstruct + manual inspection
DSSP llhHHLLLHHHLLLLLLLLLLEELLLLLLEEHHHLLLLLLLLLLLLEEEELHHHHHHHHHHHHHHHHHHHLLLLEEEEEEELLlHHHHHH
1fsg gshMASKPIEDYGKGKGRIEPMYIPDNTFYNADDFLVPPHCKPYIDKILLPGGLVKDRVEKLAYDIHRTYFGEELHIICILKGsRGFFNL
        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
1qk3 gshMASKPIEDYGKGKGRIEPMYIPDNTFYNADDFLVPPHCKPYIDKILLPGGLVKDRVEKLAYDIHRTYFGEELHIICILKGsRGFFNL
DSSP lllLLLLLHHHLLLLLLLLLLEELLLLLLEEHHHLLLLHHHHHHLLEELLLHHHHHHHHHHHHHHHHHHLLLLLEEEEEELLLlLLHHHH


DSSP HHHHHHHHHHHLLLLLLLLLLEEEEEEeeeeelleeeeeEEEE............LLLHHHHLLLEEEEEEEEELLLHHHHHHHHHHHLLLLLEEEEEEEEE
1fsg LIDYLATIQKYSGRESSVPPFFEHYVRlksyqndnstgqLTVL............SDDLSIFRDKHVLIVEDIVDTGFTLTEFGERLKAVGPKSMRIATLVE
     |||||||||||||||||||||||||||            |               |||||||||||||||||||||||||||||||||||||||||||||||
1qk3 LIDYLATIQKYSGRESSVPPFFEHYVR............LKSYqndnstgqltvlSDDLSIFRDKHVLIVEDIVDTGFTLTEFGERLKAVGPKSMRIATLVE
DSSP HHHHHHHHHHLLHHHLLLLLLEEEEEL............LLLLllllllllllllLLLLHHHLLLEEEEEEEEELLLHHHHHHHHHHHLLLLLEEEEEEEEE


DSSP ELLLLLLLLLLLEEEEEELLLLEELLLLLLLLLLLLLLLEEELLHHHHHHHll
1fsg KRTDRSNSLKGDFVGFSIEDVWIVGCCYDFNEMFRDFDHVAVLSDAARKKFek
     |||||||||||||||||||||||||||||||||||||||||||||||||||
1qk3 KRTDRSNSLKGDFVGFSIEDVWIVGCCYDFNEMFRDFDHVAVLSDAARKKF..
DSSP ELLLLLLLLLLLEEEEEELLLLEELLLLLLLLLLLLLLLLEELLHHHHHLL..


*Z-score 28.1  AR 215  RMSD 1.9A  SI 99%
Structural alignment by DaliLite


(4) Cluster 19

(4-1)
jpg image jpg image
jpg image
   Z-Score: 3.4
AR: 74
RMSD: 5.3A
SI: 14%
1go4 E (len 87) 1go4 F (len 87)
DaliLite result

site 
1goE  FSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQ SRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRAME
code  --AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABG1B10000Q B0000000RG0QAAAAAAAAAAAAAAAAAAAAAAAAHAA9--

LCS     AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA   B 0000Q B 000000RG0QAAAAAAAAAAAAAAAAAAAAAAAA AA
code --QAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAB 0000QAB 000000RG0QAAAAAAAAAAAAAAAAAAAAAAAAAAAA--
1goF FSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQ GDYDQSR TKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRAME
site


*RATIO :  lcs/trimmed_seq_a = 0.916 (=   76/   83), lcs/trimmed_seq_b = 0.916 (=   76/   83)
Structural alignment by ComSubstruct + manual inspection
DSSP lhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHllllLLLLL.LLLL....LLLLllLHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLL....
1goE fsreeadTLRLKVEELEGERSRLEEEKRMLEAQLERralqGDYDQ.SRTK....VLHMslNPTSVARQRLREDHSQLQAECERLRGLLRAME....
              |     |      || |   ||                                       |                ||
1goF .......FSREEADTLRLKVEELEGERSRLEEEKRMleaqLERRAlQGDYdqsrTKVL..HMSLNPTSVARQRLREDHSQLQAECERLRGLLrame
DSSP .......LLLLLLHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHLLLllllLLLL..LLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHhhll


*Z-score 3.4  AR 74  RMSD 5.3A  SI 14%
Structural alignment by DaliLite

(4-2)
jpg image jpg image
jpg image
   Z-Score: 3.7
AR: 77
RMSD: 5.1A
SI: 14%
1go4 E (len 87) 1go4 H (len 93)
DaliLite result

site 
1goE       FSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRA LQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRAME
code       --AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABG1 B10000QB0000000RG0QAAAAAAAAAAAAAAAAAAAAAAAAHAA9--

LCS          AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA    B 0000QB0000000 G0QAAAAAAAAAAAAAAAAAAAAAAAA AA
code --ABRQBQAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAB 0000QB0000000QG0QAAAAAAAAAAAAAAAAAAAAAAAAAAAA--
1goH AEQSFLFSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQ GDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRAME
site


*RATIO :  lcs/trimmed_seq_a = 0.916 (=   76/   83), lcs/trimmed_seq_b = 0.854 (=   76/   89)
Structural alignment by ComSubstruct + manual inspection
DSSP LHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHllLLLL.....lllllLLLLLLllLHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLL....
     
LHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHllLLLL.....lllllLLLLLLllLHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLL....
1goE FSREeADTLRLKVEELEGERSRLEEEKRMLEAQLERraLQGD.....ydqsrTKVLHMslNPTSVARQRLREDHSQLQAECERLRGLLRAME....
              |     |      || |   ||        |                              |                ||
1goH AEQS.FLFSREEADTLRLKVEELEGERSRLEEEKRMleAQLErralqgdydqSRTKVL..HMSLNPTSVARQRLREDHSQLQAECERLRGLLrame
DSSP LLLL.LLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhlllllllLLLLLL..LLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHhhll


*Z-score 3.7  AR 77  RMSD 5.1A  SI 14%
Structural alignment by DaliLite

(4-3)
jpg image jpg image
jpg image
   Z-Score: 4.6
AR: 78
RMSD: 5.8A
SI: 51%
1go4 F (len 87) 1go4 G (len 100)
DaliLite result

site 
1goF FSR    EEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQ    GDYDQSRT KVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRAME
code --Q    AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAB    0000QAB0 00000RG0QAAAAAAAAAAAAAAAAAAAAAAAAAAAA--

LCS    Q    AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAB    0000Q B0 00000 G0QAAAAAAAAAAAAAAAAAAAAAAAAAAAA
code --QAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABGRG00000Q B0G00000QG0QAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAB01--
1goG SSAEQSFLFSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQ SRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRAMERGGTV
site


*RATIO :  lcs/trimmed_seq_a = 0.976 (=   81/   83), lcs/trimmed_seq_b = 0.844 (=   81/   96)
Structural alignment by ComSubstruct + manual inspection
DSSP .....lLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.....hhhHHLLLLlllllLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLL.....
1goF .....fSREEADTLRLKVEELEGERSRLEEEKRMLEAQLE.....rraLQGDYDqsrtkVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRAME.....
                          |                             |       ||||||||||||||||||||||||||||||||||||||
1goG ssaeqsFLFSREEADTLRLKVEELEGERSRLEEEKRMLEAqlerralqGDYDQS..rtkVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRAMErggtv
DSSP llhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhlllllLLLLLL..lllLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLlllll


*Z-score 4.6  AR 78  RMSD 5.8A  SI 51%
Structural alignment by DaliLite

(4-4)
jpg image jpg image
jpg image
   Z-Score: 1.8
AR: 55
RMSD: 5.5A
SI: 11%
1go4 G (len 100) 1go4 H (len 93)
DaliLite result

site 
1goG SSAEQS   FLFSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRAMERGGTV
code --QAAA   AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABGRG00000QB0G00000QG0QAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAB01--

LCS     A     AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAB    0000QB0 00000QG0QAAAAAAAAAAAAAAAAAAAAAAAAAAAA
code  --ABRQBQAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAB    0000QB0000000QG0QAAAAAAAAAAAAAAAAAAAAAAAAAAAA--
1goH  AEQSFLFSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQ    GDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRAME
site


*RATIO :  lcs/trimmed_seq_a = 0.865 (=   83/   96), lcs/trimmed_seq_b = 0.933 (=   83/   89)
Structural alignment by ComSubstruct + manual inspection
DSSP ..................LLHHHHHHHHHHHHHHHHHHHHHHHHHHH...hhhhHHHHhhhHHHLllllllllllllllllLLLLHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhllllll
1goG ..................SSAEQSFLFSREEADTLRLKVEELEGERS...rleeEKRMleaQLERralqgdydqsrtkvlhMSLNPTSVARQRLREDHSqlqaecerlrgllramerggtv
                                  ||         |                     |                    |         |
1goH aeqsflfsreeadtlrlkVEELEGERSRLEEEKRMLEAQLERRALQGdydqsrtKVLH..mSLNP....tsvarqrlredhSQLQAECERLRGLLRAME......................
DSSP lllllllhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHLLLlllllllLLLL..lLLLH....hhhhhhhhhhhhHHHHHHHHHHHHHHHHLL......................


*Z-score 1.8  AR 55  RMSD 5.5A  SI 11%
Structural alignment by DaliLite


(5) Cluster 20

jpg image jpg image
jpg image
   Z-Score: 12.2
AR: 102
RMSD: 7.1A
SI: 100%
1gv2 A (len 102) 1h89 C (len 115)
DaliLite result

site                                                                                                                      
1gv2      ELIK     G  PWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVK KTS WTEEEDRIIYQAHKRLGNRWAEIAKLLPGR TDNAIKNHWNSTMR
code      --00     0  000QAAAAAAAAAAAB00RHRQAAAAABG0RG0QAAAAAAAAB000RG00 0RG 00QAAAAAAAAAAAB00RRQAAAAABGQ0G 0QAAAAAAAA00--

LCS         0      0  000QAAAAAAAAAAA  0RHRQAAAAABG0RG0QAAAAAAAA 000 G   0RG 00QAAAAAAAAAAA 00RRQAAAAABG 0  0QAAAAAAA 0
code --AAB1A01RRQBG0RG000QAAAAAAAAAAA830RHRQAAAAABG0RG0QAAAAAAAA 000 GQBG0RG000QAAAAAAAAAAAG00RRQAAAAABG 0000QAAAAAAAB0QJ--
1h89 QCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWH NHL NPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLL PGRTDNAIKNHWNSTMRR
site                   +++++++++           +++++++++++++++++++++ +++         +++++++++          ++++++++ ++++++++++++++++


*RATIO :  lcs/trimmed_seq_a = 0.878 (=   86/   98), lcs/trimmed_seq_b = 0.775 (=   86/  111)
Structural alignment by ComSubstruct + manual inspection
DSSP ............LLLLLLLLHHHHHHHHHHHHHHLLLLHHHHHLLLLLLLHHHHHHHHHHLLLLLLLLLLLLHHHHHHHHHHHHHHLLLHHHHHLLLLLLLHHHHHHHHHHHLL.
1gv2 ............ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR.
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1h89 qcqhrwqkvlnpELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRr
DSSP lhhhhhhlllllLLLLLLLLHHHHHHHHHHHHHHLLLLHHHHHHLLLLLLHHHHHHHHHHLLLLLLLLLLLLHHHHHHHHHHHHHHLLLHHHHHLLLLLLLHHHHHHHHHLLLLl


*Z-score 12.1  AR 102  RMSD 7.1A  SI 100%
Structural alignment by DaliLite



[The DSSP code]

[The 5-tile code]