Z-Score:
22.8
AR: 238 RMSD: 8.3A SI: 100% |
||||
1fgu A (len 246) | 1jmc
A (len 238) |
DaliLite result |
site 1fgu MSKVVPIASLTPYQ SKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFT code --R000QABG00R0 R00000000R0000000000QB000000000000QB000000000QAAAG1QABG00RG000000000000RQAJ0 LCS 00QAB 00 R 000 000R0000000000 000000000000Q 000000000QAAA 1QABG00RG000000000000RQA code --00QAB 00QBGRG000R000R0000000000R0000000000000QG000000000QAAAB1QABG00RG000000000000RQA 1jmc KVVPIAS LTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQ site site 1fgu AVK NDYEMTFNNETSVMPCEDDHH LPTVQFDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATL code RGR 0RG00000QBG00000R0RRR 00R000R000QAAQABG00R000000000R0000000000QB0R000000000000QBR0000000 LCS GR 0R 00000QBG00000 0R 00 000R000QAA ABG00R00000000 R0000000000QB0R000000000000QBR0000000 code GGRG00R000000QBG00000 0RQBO000000R000QAAAABG00R00000000RR0000000000QB0R000000000000QBR0000000 1jmc FTAVKNDYEMTFNNETSVMPC EDDHHLPTVQFDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATL site site 1fgu WGEDADKFDGSRQPVLAIKGARVSDFGG RSLSVLSSSTIIANPDI PEAYKLRGWFDAEGQALDGVS code 00QAAAB00R0R0000000R0000RGR0 000000QBG0000R0R0 QAAAAAAAAAAB0QB0000-- LCS 00QAA B00R0R 000000R0000R 0 000000QBG000 R0 0 QAAAAAAAAA B0Q code 00QAAGB00R0RR000000R0000R 0RR000000QBG000 R0 0RGQAAAAAAAAA B0Q-- 1jmc WGEDADKFDGSRQPVLAIKGARVSD FGGRSLSVLSSSTII AN PDIPEAYKLRGWF DAEGQ site *RATIO : lcs/trimmed_seq_a = 0.864 (= 209/ 242), lcs/trimmed_seq_b = 0.893 (= 209/ 234) |
Structural alignment by ComSubstruct + manual inspection |
DSSP
llLLLLHHHLLLLLLLLEEEEEEEEELLLEEEEELLEEEEEEEEEEELLLLEEEEEEEHHHHHHHHHHLLLLLEEEEELLEEEELLHHHL 1fgu msKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFT |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1jmc ..KVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFT DSSP ..LLLLHHHLLLLLLLLEEEEEEEEELLLEEEELLLLEEEEEEEEEELLLLEEEEEEEHHHHHHHHHHLLLLLEEEEELLEEEELLHHHL DSSP LLLLLEEEELLLLLEEEELLLLLLLLLLLLLLLLHHHHHHLLLLLEEEEEEEEEEELLLEEEELLLLLLEEEEEEEEEELLLLLEEEEEE 1fgu AVKNDYEMTFNNETSVMPCEDDHHLPTVQFDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATL |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1jmc AVKNDYEMTFNNETSVMPCEDDHHLPTVQFDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATL DSSP LLLLLEEEELLLLLEEEELLLLLLLLLLLLLLLLHHHHHHLLLLLEEEEEEEEEEELLLEEEEELLLLEEEEEEEEEEELLLLLEEEEEE DSSP EHHHHHHLLLLLLLEEEEEEEEEELLLLLEEELLLLLEEEELLLLHHHHHHHHHHHHHLLllllll 1fgu WGEDADKFDGSRQPVLAIKGARVSDFGGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQaldgvs |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1jmc WGEDADKFDGSRQPVLAIKGARVSDFGGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQ...... DSSP EHHHHHHLLLLLLLEEEEEEEEEELLLLLEEELLLLLEEELLLLLHHHHHHHHHHHHLLL...... *Z-score 22.8 AR 238 RMSD 8.3A SI 100% |
Structural alignment by DaliLite |
Z-Score:
26.9
AR: 199 RMSD: 2.0A SI: 96% |
||||
1fm6 A (len 232) | 1g1u
B (len 229) |
DaliLite result |
site 1fm6 NEDMPVERILEAELAVEPKTET YVEANMGL NPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHR code --R00QAAAAAAAAB00000QA BHQ00000 000R00G2AAAAAAAAAAAAAAAAAAAABG0RQABG0QAAAAAAAAB1QAAAAAAAAAAA LCS AAAAAAAAB0000 QA B 0 000 00 AAAAAAAAAAAAAAAAAAABG0RQABG0QAAAAAAAAB1QAAAAAAAAAAA code --AAAAAAAAB0000 QAAAB 01RRQBBGR000 00Q AAAAAAAAAAAAAAAAAAABG0RQABG0QAAAAAAAAB1QAAAAAAAAAAA 1g1u PVERILEAELAVEPK TETYV EANMGLNPSSPN DPV TNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHR site site 1fm6 SIAVKDGILLATGLHVHRNSAHSAGVGA IFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKH code AQBG000000QBR00001AAAAABRR0Q AAAAAA0B0QAAAAABR00QAAAAAAAAAAAB0QB00R0R0QAAAAAAAAAAAAAAAAAAAA LCS AQBG0 0000QBR0000 AAAAABRR Q AAAAAA0B0QAAAAABR00QAAAAAAAAAAAB0QB 0R0R0QAAAAAAAAAAAAAAAAAAAA code AQBG0G0000QBR0000QAAAAABRR QAAAAAAA0B0QAAAAABR00QAAAAAAAAAAAB0QBG0R0R0QAAAAAAAAAAAAAAAAAAAA 1g1u SIAVKDGILLATGLHVHRNSAHSAGV GAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKH site site 1fm6 KYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTF LMEM LEAP code B0QBGQBQAAAAAAAAAAAAAAAAAAAAAAAAAABB00R0001Q AAAA BR-- LCS B0Q GQBQAAAAAAAAAAAAAAAAAAAA AAABB 1Q AAAA B code B0QAGQBQAAAAAAAAAAAAAAAAAAAABRQAAABB 1QAAAAAAAAAAABG-- 1g1u KYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLI GDTPIDTFLMEMLEAPH site *RATIO : lcs/trimmed_seq_a = 0.868 (= 198/ 228), lcs/trimmed_seq_b = 0.880 (= 198/ 225) |
Structural alignment by ComSubstruct + manual inspection |
DSSP
llllLHHHHHHHHHLLLLLLLHHHH.lllLLLLLLLllllhhhhHHHHHHHHHHHHHHHHLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHH 1fm6 nedmPVERILEAELAVEPKTETYVE.anmGLNPSSPndpvtnicQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHR ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| 1g1u ....PVERILEAELAVEPKTETYVEanmgLNPSSPN.dpvtnicQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHR DSSP ....LHHHHHHHHHHLLLLLLLLLLllllLLLLLLL.lhhhhhhHHHHHHHHHHHHHHLLLLLHHHLLHHHHHHHHHHHHHHHHHHHHHHH DSSP LLLLLLEEELLLLLEEEHHHHHLLLLLLHHHHHHHHLHHHHHHLLLLHHHHHHHHHHHHLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHH 1fm6 SIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKH |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1g1u SIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKH DSSP HHHLLLLEELLLLLEELHHHHHHLLLHHHHHHHHHHLHHHHHHHLLLHHHHHHHHHHHHLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHH DSSP HLLLLLLHHHHHHLLHHHHHHHHHHHHHHH....hhhhllLLLLllllhhhhllll 1fm6 KYPEQPGRFAKLLLRLPALRSIGLKCLEHL....fffkliGDTPidtflmemleap |||||||||||||||||||||||||||||| || 1g1u KYPEQPGRFAKLLLRLPALRSIGLKCLEHLfffkligdtpIDTF...lmemleaph DSSP HLLLLLLHHHHHHLLHHHHHHHHHHHHHLLhhhhhhhhhhHHHH...hhhhhhlll *Z-score 26.9 AR 199 RMSD 2.0A SI 96% |
Structural alignment by DaliLite |
Z-Score:
27.8
AR: 200 RMSD: 1.8A SI: 97% |
||||
1fm6 A (len 232) | 1g1u
C (len 226) |
DaliLite result |
site 1fm6 NEDMPVERILEAELAVEPKTE TYVEANMGLN PSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIA SFSHR code --R00QAAAAAAAAB00000Q ABHQ000000 00R00G2AAAAAAAAAAAAAAAAAAAABG0RQABG0QAAAAAAAAB1QAAAAAA AAAAA LCS AAAAAAAAB0 0 AB 0 00 00 AAAAAAAAAAAAAAAAAAABG0RQABG0QAAAAAAAAB1QAAAAAA AAAAA code --AAAAAAAAAB0R01AAAAB1B0RQGRGR00 00Q AAAAAAAAAAAAAAAAAAABG0RQABG0QAAAAAAAAB1QAAAAAAHAAAAA 1g1u PVERILEAELAVEPKTETYVEANMGLNPSSPN DPV TNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRS site site 1fm6 SIAVKDGILLATGLHVHRNSAHSAGV GAIFDRVLT ELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKH code AQBG000000QBR00001AAAAABRR 0QAAAAAA0 B0QAAAAABR00QAAAAAAAAAAAB0QB00R0R0QAAAAAAAAAAAAAAAAAAAA LCS A BG000000QBR0000 AA BRR 0QAAAAAA B0QAAAAABR00QAAAAAAAAAAAB0QB00 0R0QAAAAAAAAAAAAAAAAAAAA code A BG000000QBR00000QAA BRRG0QAAAAAAAAB0QAAAAABR00QAAAAAAAAAAAB0QB00O0R0QAAAAAAAAAAAAAAAAAAAA 1g1u I AVKDGILLATGLHVHRNSA HSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKH site site 1fm6 KYPEQPGRFAKLLLRLPALRSIGLKCLEHL FFFKLIGDTPIDTFLMEMLEAP code B0QBGQBQAAAAAAAAAAAAAAAAAAAAAA AAAABB00R0001QAAAABR-- LCS 0Q GQBQAAAAAAAAAAAAAAAAAAAA AAAAB 1QAAAA code A0QAGQBQAAAAAAAAAAAAAAAAAAAABRQAAAAB 1QAAAAAAAAAA-- 1g1u KYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLI GDTPIDTFLMEMLE site *RATIO : lcs/trimmed_seq_a = 0.829 (= 189/ 228), lcs/trimmed_seq_b = 0.851 (= 189/ 222) |
Structural alignment by ComSubstruct + manual inspection |
DSSP
llllLHHHHHHHHHLLLLLLLHHHHLLLLL..LLLLLLlllhhhHHHHHHHHHHHHHHHHHLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHH 1fm6 nedmPVERILEAELAVEPKTETYVEANMGL..NPSSPNdpvtniCQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHR |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| 1g1u ....PVERILEAELAVEPKTETYVEANMGLnpSSPNDP..vtniCQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHR DSSP ....LLHHHHHHHHHLLLLLHHHHHHLLLLllLLLLLH..hhhhHHHHHHHHHHHHHHHHHLLLHHHLLHHHHHHHHHHHHHHHHHHHHHHH DSSP LLLLLLEEELLLLLEEEHHHHHLLLLLLHHHHHHHHLHHHHHHLLLLHHHHHHHHHHHHLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHH 1fm6 SIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKH |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1g1u SIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKH DSSP LLLLLLEEELLLLLEEEHHHHHLLLLHHHHHHHHHHLHHHHHHLLLLHHHHHHHHHHHHLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHH DSSP HLLLLLLHHHHHHLLHHHHHHHHHHHHHHHhhhhllllllllllhhhhllll 1fm6 KYPEQPGRFAKLLLRLPALRSIGLKCLEHLfffkligdtpidtflmemleap |||||||||||||||||||||||||||||| 1g1u KYPEQPGRFAKLLLRLPALRSIGLKCLEHL..fffkligdtpidtflmemle DSSP HLLLLLLHHHHHHLLHHHHHHHHHHHHHLL..hhhhhllhhhhhhhhhhhhl *Z-score 27.8 AR 200 RMSD 1.8A SI 97% |
Structural alignment by DaliLite |
Z-Score:
27.4
AR: 205 RMSD: 2.2A SI: 96% |
||||
1fm6 A (len 232) | 1g5y
A (len 228) |
DaliLite result |
site
1fm6 NEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNIC QA A DKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHR code --R00QAAAAAAAAB00000QABHQ00000000R00G2AAAAA AA A AAAAAAAAAAAABG0RQABG0QAAAAAAAAB1QAAAAAAAAAAA LCS AAAAAAAAQ Q R0 AAAAA AA A AAAAAAAAAAAAQG0RQAQG0QAAAAAAAAQ1QAAAAAAAAAAA code --AAAAAAAAB B RR01Q AAAAAB00RG1RRRRG1AAHAHBHQAAAAAAAAAAAABG0RQABG0QAAAAAAAAB1QAAAAAAAAAAA 1g5y PVERILEAELA V EPKTE TYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHR site site 1fm6 SIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVL TELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKH code AQBG000000QBR00001AAAAABRR0QAAAAAA 0B0QAAAAABR00QAAAAAAAAAAAB0QB00R0R0QAAAAAAAAAAAAAAAAAAAA LCS AQBG0 000QBR0000 AAAAAQRR QAAAAAA 0Q0QAAAAAQR00QAAAAAAAAAAAQ0QB00 0R0QAAAAAAAAAAAAAAAAAAAA code AQBG0RG000QBR0000QAAAAABRR QAAAAAAA0B0QAAAAABR00QAAAAAAAAAAAB0QB0000R0QAAAAAAAAAAAAAAAAAAAA 1g5y SIAVKDGILLATGLHVHRNSAHSAGV GAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKH site site 1fm6 KYPEQPGRFAKLLLRLPALRSIGLKCLE HLFFFKLIGDTPIDTFLMEM LEAP code B0QBGQBQAAAAAAAAAAAAAAAAAAAA AAAAAABB00R0001QAAAA BR-- LCS Q0QBGQBQAAAAAAAAAAAAAAAAAAAA AAAA Q 0 QAAAA Q code B0QBGQBQAAAAAAAAAAAAAAAAAAAABRQAAAA B 0QAAAAGQAAAAAB-- 1g5y KYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKL I GDTPIDTFLMEMLEAP site *RATIO : lcs/trimmed_seq_a = 0.829 (= 189/ 228), lcs/trimmed_seq_b = 0.844 (= 189/ 224) |
Structural alignment by ComSubstruct + manual inspection |
DSSP
llllLHHHHHHHHHLLLLLLLHHHHLLLLLLLL.LLLLllhhhHHHHHHHHHHHHHHHHHLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHH 1fm6 nedmPVERILEAELAVEPKTETYVEANMGLNPS.SPNDpvtniCQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHR ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| 1g5y ....PVERILEAELAVEPKTETYVEANMGLNPSsPNDP.vtniCQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHR DSSP ....LLLLLLLLLLLLLLLLHHHHHHLLLLLLLlLLLL.hhhhHHLLHHHHHHHHHHHHHLLLHHHLLHHHHHHHHHHHHHHHHHHHHHHH DSSP LLLLLLEEELLLLLEEEHHHHHLLLLLLHHHHHHHHLHHHHHHLLLLHHHHHHHHHHHHLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHH 1fm6 SIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKH |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1g5y SIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKH DSSP HHHLLLEEELLLLLEEEHHHHHHLLLHHHHHHHHHHLHHHHHHLLLLHHHHHHHHHHHHLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHH DSSP HLLLLLLHHHHHHLLHHHHHHHHHHHHHHH.hhhhllLLLLllllhhhhllll 1fm6 KYPEQPGRFAKLLLRLPALRSIGLKCLEHL.fffkliGDTPidtflmemleap |||||||||||||||||||||||||||||| 1g5y KYPEQPGRFAKLLLRLPALRSIGLKCLEHLfffkligDTPI.dtflmemleap DSSP HLLLLLLHHHHHHLLHHHHHHHHHHHHHLLhhhhhllLHHH.hhhhhhhllll *Z-score 27.4 AR 205 RMSD 2.2A SI 96% |
Structural alignment by DaliLite |
Z-Score:
28.3
AR: 202 RMSD: 2.0A SI: 99% |
||||
1fm6 A (len 232) | 1g5y
B (len 229) |
DaliLite result |
site 1fm6 NEDMPVERILEAELAVEPKT ET YVE AN MGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHR code --R00QAAAAAAAAB00000 QA BHQ 00 000000R00G2AAAAAAAAAAAAAAAAAAAABG0RQABG0QAAAAAAAAB1QAAAAAAAAAAA LCS AAAAAAAA 0 0 QA BHQ 00 000 00 AAAAAAAAAAAAAAAAAAA BG0RQABG0QAAAAAAAAB1QAAAAAAAAAAA code --AAAAAAAAG 0G0RQAABHQG001RG1R000 00Q AAAAAAAAAAAAAAAAAAA BG0RQABG0QAAAAAAAAB1QAAAAAAAAAAA 1g5y PVERILEAELA VEPKTETYVEANMGLNPSSPN DPV TNICQAADKQLFTLVEWAK RIPHFSELPLDDQVILLRAGWNELLIASFSHR site site 1fm6 SIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVL TELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKH code AQBG000000QBR00001AAAAABRR0QAAAAAA 0B0QAAAAABR00QAAAAAAAAAAAB0QB00R0R0QAAAAAAAAAAAAAAAAAAAA LCS AQBG000000QBR0000 AAAAABRR QAAAAAA 0B0QAAAAABR00QAAAAAAAAAAAB0QB 0R0R0QAAAAAAAAAAAAAAAAAAAA code AQBG000000QBR0000QAAAAABRR QAAAAAAA0B0QAAAAABR00QAAAAAAAAAAAB0QBG0R0R0QAAAAAAAAAAAAAAAAAAAA 1g5y SIAVKDGILLATGLHVHRNSAHSAGV GAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKH site site 1fm6 KYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM LEAP code B0QBGQBQAAAAAAAAAAAAAAAAAAAAAAAAAABB00R0001QAAAA BR-- LCS B0Q GQBQAAAAAAAAAAAAAAAAAAAA AAAB 01QAAAA B code B0QAGQBQAAAAAAAAAAAAAAAAAAAABRQAAAB 01QAAAAAAAAAAABG-- 1g5y KYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKL IGDTPIDTFLMEMLEAPH site *RATIO : lcs/trimmed_seq_a = 0.873 (= 199/ 228), lcs/trimmed_seq_b = 0.884 (= 199/ 225) |
Structural alignment by ComSubstruct + manual inspection |
DSSP
llllLHHHHHHHHHLLLLLLLHHHHLLLLLLLLLLllllhhhhHHHHHHHHHHHHHHHHLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHH 1fm6 nedmPVERILEAELAVEPKTETYVEANMGLNPSSPndpvtnicQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHR ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| 1g5y ....PVERILEAELAVEPKTETYVEANMGLNPSSPndpvtnicQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHR DSSP ....LHHHHHHHHHHLLLHHHHHHHLLLLLLLLLLlllhhhhhHHHHHHHHHHHHHHHHLLLHHHLLHHHHHHHHHHHHHHHHHHHHHHH DSSP LLLLLLEEELLLLLEEEHHHHHLLLLLLHHHHHHHHLHHHHHHLLLLHHHHHHHHHHHHLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHH 1fm6 SIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKH |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1g5y SIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKH DSSP HHHLLLLEELLLLLEELHHHHHHLLLHHHHHHHHHHLHHHHHHHLLLHHHHHHHHHHHHLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHH DSSP HLLLLLLHHHHHHLLHHHHHHHHHHHHHHH....hhhhllLLLLllllhhhhllll 1fm6 KYPEQPGRFAKLLLRLPALRSIGLKCLEHL....fffkliGDTPidtflmemleap |||||||||||||||||||||||||||||| || 1g5y KYPEQPGRFAKLLLRLPALRSIGLKCLEHLfffkligdtpIDTF...lmemleaph DSSP HLLLLLLHHHHHHLLHHHHHHHHHHHHHLLhhhhhhhhhhHHHH...hhhhhhlll *Z-score 28.3 AR 202 RMSD 2.0A SI 99% |
Structural alignment by DaliLite |
Z-Score:
26.6
AR: 205 RMSD: 2.1A SI: 96% |
||||
1fm6 A (len 232) | 1g5y
D (len 229) |
DaliLite result |
site 1fm6 NEDMPVERILEAELAVEPKTET YVEANMGLNPSS PNDP VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHR code --R00QAAAAAAAAB00000QA BHQ00000000R 00G2 AAAAAAAAAAAAAAAAAAAABG0RQABG0QAAAAAAAAB1QAAAAAAAAAAA LCS AAAAAAAA 000 QA B 0R 0 G AAAAAAAAAAAAAAAAAAAABG0RQABG0QAAAAAAAAB1QAAAAAAAAAAA code --AAAAAAAAAG000 QAAB1AABB 0RG1R0RG0QAAAAAAAAAAAAAAAAAAAABG0RQABG0QAAAAAAAAB1QAAAAAAAAAAA 1g5y PVERILEAELAVEPK TETYVEANM GLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHR site site 1fm6 SIAVK DGILLATG LHVHRNSAHSAGVGAIFDRVLT ELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKH code AQBG0 00000QBR 00001AAAAABRR0QAAAAAA0 B0QAAAAABR00QAAAAAAAAAAAB0QB00R0R0QAAAAAAAAAAAAAAAAAAAA LCS A BG0 00000 R 000 AAAAABRR QAAAAAA B0QAAAAABR00QAAAAAAAAAAAB0QB00R0R0QAAAAAAAAAAAAAAAAAAA code AABG0RG00000 R3000Q AAAAABRR QAAAAAAAAB0QAAAAABR00QAAAAAAAAAAAB0QB00R0R0QAAAAAAAAAAAAAAAAAAAG 1g5y SIAVKDGILLAT GLHVHR NSAHSAGV GAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKH site site 1fm6 KYPEQPGRFAKLLLRLPALRSIGLKCLE HLFFFKLIGDTPIDTFLMEM LEAP code B0QBGQBQAAAAAAAAAAAAAAAAAAAA AAAAAABB00R0001QAAAA BR-- LCS B0Q GQBQAAAAAAAAAAAAAAAAAAAA AAAAB 0 QAAAA B code B0QAGQBQAAAAAAAAAAAAAAAAAAAABRQAAAAB 0 QAAAAAAAAAAABG-- 1g5y KYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLI G DTPIDTFLMEMLEAPH site *RATIO : lcs/trimmed_seq_a = 0.838 (= 191/ 228), lcs/trimmed_seq_b = 0.849 (= 191/ 225) |
Structural alignment by ComSubstruct + manual inspection |
DSSP
llllLHHHHHHHHHLLLLLLLHHHHLLLLLLLLLLLlllhHHHHHHHHHHHHHHHHHHHLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHH 1fm6 nedmPVERILEAELAVEPKTETYVEANMGLNPSSPNdpvtNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHR |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| 1g5y ....PVERILEAELAVEPKTETYVEANMGLNPSSPNdpvtNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHR DSSP ....LHHHHHHHHHLLLLLLHHHHHHHHLLLLLHHHlllhHHHHHHHHHHHHHHHHHHLLLLHHHLLHHHHHHHHHHHHHHHHHHHHHHH DSSP LLLLLLEEELlLLLE.EEHHHHHLLLLLLHHHHHHHHLHHHHHHLLLLHHHHHHHHHHHHLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHH 1fm6 SIAVKDGILLaTGLH.VHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKH |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1g5y SIAVKDGILL.ATGLhVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKH DSSP HHHLLLLLLL.LLLLlLLHHHHHHLLLHHHHHHHHHHLHHHHHHLLLLHHHHHHHHHHHHLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHH DSSP HLLLLLLHHHHHHLLHHHHHHHHHHHHHHH.hhhhllLLLLllllhhhhllll 1fm6 KYPEQPGRFAKLLLRLPALRSIGLKCLEHL.fffkliGDTPidtflmemleap |||||||||||||||||||||||||||||| 1g5y KYPEQPGRFAKLLLRLPALRSIGLKCLEHLfffkligDTPIdtflmemleaph DSSP HLLLLLLHHHHHHLLHHHHHHHHHHHHHHLhhhhhhlLHHHhhhhhhhhllll *Z-score 26.6 AR 205 RMSD 2.1A SI 96% |
Structural alignment by DaliLite |
Z-Score:
28.4
AR: 213 RMSD: 1.8A SI: 99% |
||||
1fsg A (len 233) | 1qk3
A (len 228) |
DaliLite result |
site 1fsg GSHMASKPIEDYGKGKGRIEPMYIPDNTFYNADDFLVPPHCK PYIDKILLPGGLVKDRVEKLAYDIHRTYFGEELHIIC ILKGS RGFFNL code --QABG00QAB0RRR0R000000000R0000QABG000QABQ BG0000R00QAAAAAAAAAAAAAAAAB00RGR00000 00OHB QAAAAA LCS G00QAB0RRR0R0 0000000R0000QABG000QABQ BG 000 00QAAAAAAAAAAAAAAAA 00RG 00000 00 B Q AAA code --G00QAB0RRR0R0R0000000R0000QABG000QABQABGR000 00QAAAAAAAAAAAAAAAAA00RG000000R000QB0Q AAA 1qk3 MASKPIEDYGKGKGRIEPMYIPDNTFYNADDFLVPPHCKPYIDKIL LPGGLVKDRVEKLAYDIHRTYFGEELHIICILKGSRGF FNL site site +++++++++++++ 1fsg LIDYLATIQKYSG RESSVPPFFEHYVR LKSYQNDNSTGQLT VLSDD LSIFRDKHVLIVEDIVDTGFTLTEFGERLKAVGPKSMRIATLVE code AAAAAAAAAAB0R G00RG0R0000000 000003RG0RRG00 00000 QAAB0R0000000R000RRQAAAAAAAAAAAB00R000000R00 LCS AAAAAAAAA B0R G00 0 0000000 00000 R 0 00 00000 Q AB0R0 00000R000RRQAAAAAAAAAAAB00R000000R00 code AAAAAAAAA B0RQGQAG00 0 0000000R00000 R 0 00RG00000RGRQ AB0R0O00000R000RRQAAAAAAAAAAAB00R000000R00 1qk3 LIDYLATIQ KYSGRESSVP P FFEHYVRLKSYQN D N STGQLTVLSDDLS IFRDKHVLIVEDIVDTGFTLTEFGERLKAVGPKSMRIATLVE site +++++++++++++ site * 1fsg K RTDRSN S LKGDFVGFSIEDVWIVGCCYDFNEM FRDF DHVAVLSDAARKKFEK code 0 00QBGR R 000R0000000R00001RR000RRG RQBG RG00000QAAAAB0-- LCS 0 0 R R 000R0000000R0000 00 RG RQB RG00000QAAAA code 0R0 RG0R0000R0000000R0000 00 RG00RRQBQB0RG00000QAAAA-- 1qk3 KRT DRSNSLKGDFVGFSIEDVWIV GC CYDFNEMFRDFDHVAVLSDAARKKF site * *RATIO : lcs/trimmed_seq_a = 0.847 (= 194/ 229), lcs/trimmed_seq_b = 0.866 (= 194/ 224) |
Structural alignment by ComSubstruct + manual inspection |
DSSP
llhHHLLLHHHLLLLLLLLLLEELLLLLLEEHHHLLLLLLLLLLLLEEEELHHHHHHHHHHHHHHHHHHHLLLLEEEEEEELLLHHHHHH 1fsg gshMASKPIEDYGKGKGRIEPMYIPDNTFYNADDFLVPPHCKPYIDKILLPGGLVKDRVEKLAYDIHRTYFGEELHIICILKGSRGFFNL ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1qk3 ...MASKPIEDYGKGKGRIEPMYIPDNTFYNADDFLVPPHCKPYIDKILLPGGLVKDRVEKLAYDIHRTYFGEELHIICILKGSRGFFNL DSSP ...LLLLLHHHLLLLLLLLLLEELLLLLLEEHHHLLLLHHHHHHLLEELLLHHHHHHHHHHHHHHHHHHHLLLLEEEEEELLLLLLHHHH DSSP HHHHHHHHHHHLLLL.LLLLlLEEEEEEEeeeelleeeeeeeeELLLHHHHLLLEEEEEEEEELLLHHHHHHHHHHHLLLLLEEEEEEEEE 1fsg LIDYLATIQKYSGRE.SSVPpFFEHYVRLksyqndnstgqltvLSDDLSIFRDKHVLIVEDIVDTGFTLTEFGERLKAVGPKSMRIATLVE ||||||||||||||| | | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| 1qk3 LIDYLATIQKYSGREsSVPP.FFEHYVRLksyqndnstgqltvLSDDLSIFRDKHVLIVEDIVDTGFTLTEFGERLKAVGPKSMRIATLVE DSSP HHHHHHHHHHLLLLLlLLLL.LEEEEELLllllllllllllleELLLLHHHLLLEEEEEEEEELLLHHHHHHHHHHHLLLLLEEEEEEEEE DSSP ELLLLLLLLLLLEEEEEELLLLEELLLLLLLLLLLLLLLEEELLHHHHHHHll 1fsg KRTDRSNSLKGDFVGFSIEDVWIVGCCYDFNEMFRDFDHVAVLSDAARKKFek ||||||||||||||||||||||||||||||||||||||||||||||||||| 1qk3 KRTDRSNSLKGDFVGFSIEDVWIVGCCYDFNEMFRDFDHVAVLSDAARKKF.. DSSP EELLLLLLLLLLEEEEEEELLLEELLLLLLLLLLLLLLLLEELLHHHHHHL.. *Z-score 28.4 AR 213 RMSD 1.8A SI 99% |
Structural alignment by DaliLite |
Z-Score:
28.1
AR: 215 RMSD: 1.9A SI: 99% |
||||
1fsg A (len 233) | 1qk3
B (len 231) |
DaliLite result |
site 1fsg GSHMASKPIEDYGKGKGRIEPMYIPDNTFYNADDFLVPPHCK PYIDKILLPGGLVKDRVEKLAYDIHR TYFGEELHIICI LKG S RGFFNL code --QABG00QAB0RRR0R000000000R0000QABG000QABQ BG0000R00QAAAAAAAAAAAAAAAA B00RGR000000 0OH B QAAAAA LCS G00QAB0RRR0R000000000R0000QABG000QAB BG 00 R00QAAAAAAAAAAAAAAAA B0 RG 000000 0 B QAAAAA code --00RG00QAB0RRR0R000000000R0000QABG000QABAABGR00 R00QAAAAAAAAAAAAAAAAAB0 RG 000000R000QB0QAAAAA 1qk3 GSHMASKPIEDYGKGKGRIEPMYIPDNTFYNADDFLVPPHCKPYIDKI LLPGGLVKDRVEKLAYDIHRTYF GE ELHIICILKGSRGFFNLLI site site +++++++++++++ 1fsg LIDYLATIQKYSG RESSVPPFFEHYV RLKSYQNDNSTGQLTVLSDD LSIFRDKHVLIVEDIVDTGFTLTEFGERLKAVGPKSMRIATLVE code AAAAAAAAAAB0R G00RG0R000000 0000003RG0RRG0000000 QAAB0R0000000R000RRQAAAAAAAAAAAB00R000000R00 LCS AAAAAAAA B R G00 0 000000 000000 R RR 000000 QA B0R0000000R000RRQAAAAAAAAAAAB00R000000R00 code AAAAAAAA B RQABQBG00 0 000000RG000000 R RR 000000RGRQA B0R0000000R000RRQAAAAAAAAAAAB00R000000R00 1qk3 DYLATIQK Y SGRESSVPP F FEHYVRLKSYQNDN S TG QLTVLSDDLSI FRDKHVLIVEDIVDTGFTLTEFGERLKAVGPKSMRIATLVE site +++++++++++++ site * 1fsg KRTDRSN S LKGDFVGFSIEDVWIVGCCYDFNEM FRDF DHVAVLSDAARKKFEK code 000QBGR R 000R0000000R00001RR000RRG RQBG RG00000QAAAAB0-- LCS 000 R R 000R0000000R0000 00 RG RQB RG00000QAAAA code 000 RG0R0000R0000000R0000 00 RG00RRQBQB0RG00000QAAAA-- 1qk3 KRT DRSNSLKGDFVGFSIEDVWIV GC CYDFNEMFRDFDHVAVLSDAARKKF site * *RATIO : lcs/trimmed_seq_a = 0.856 (= 196/ 229), lcs/trimmed_seq_b = 0.863 (= 196/ 227) |
Structural alignment by ComSubstruct + manual inspection |
DSSP llhHHLLLHHHLLLLLLLLLLEELLLLLLEEHHHLLLLLLLLLLLLEEEELHHHHHHHHHHHHHHHHHHHLLLLEEEEEEELLlHHHHHH 1fsg gshMASKPIEDYGKGKGRIEPMYIPDNTFYNADDFLVPPHCKPYIDKILLPGGLVKDRVEKLAYDIHRTYFGEELHIICILKGsRGFFNL |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| 1qk3 gshMASKPIEDYGKGKGRIEPMYIPDNTFYNADDFLVPPHCKPYIDKILLPGGLVKDRVEKLAYDIHRTYFGEELHIICILKGsRGFFNL DSSP lllLLLLLHHHLLLLLLLLLLEELLLLLLEEHHHLLLLHHHHHHLLEELLLHHHHHHHHHHHHHHHHHHLLLLLEEEEEELLLlLLHHHH DSSP HHHHHHHHHHHLLLLLLLLLLEEEEEEeeeeelleeeeeEEEE............LLLHHHHLLLEEEEEEEEELLLHHHHHHHHHHHLLLLLEEEEEEEEE 1fsg LIDYLATIQKYSGRESSVPPFFEHYVRlksyqndnstgqLTVL............SDDLSIFRDKHVLIVEDIVDTGFTLTEFGERLKAVGPKSMRIATLVE ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| 1qk3 LIDYLATIQKYSGRESSVPPFFEHYVR............LKSYqndnstgqltvlSDDLSIFRDKHVLIVEDIVDTGFTLTEFGERLKAVGPKSMRIATLVE DSSP HHHHHHHHHHLLHHHLLLLLLEEEEEL............LLLLllllllllllllLLLLHHHLLLEEEEEEEEELLLHHHHHHHHHHHLLLLLEEEEEEEEE DSSP ELLLLLLLLLLLEEEEEELLLLEELLLLLLLLLLLLLLLEEELLHHHHHHHll 1fsg KRTDRSNSLKGDFVGFSIEDVWIVGCCYDFNEMFRDFDHVAVLSDAARKKFek ||||||||||||||||||||||||||||||||||||||||||||||||||| 1qk3 KRTDRSNSLKGDFVGFSIEDVWIVGCCYDFNEMFRDFDHVAVLSDAARKKF.. DSSP ELLLLLLLLLLLEEEEEELLLLEELLLLLLLLLLLLLLLLEELLHHHHHLL.. *Z-score 28.1 AR 215 RMSD 1.9A SI 99% |
Structural alignment by DaliLite |
Z-Score:
3.4
AR: 74 RMSD: 5.3A SI: 14% |
||||
1go4 E (len 87) | 1go4
F (len 87) |
DaliLite result |
site 1goE FSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQ SRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRAME code --AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABG1B10000Q B0000000RG0QAAAAAAAAAAAAAAAAAAAAAAAAHAA9-- LCS AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA B 0000Q B 000000RG0QAAAAAAAAAAAAAAAAAAAAAAAA AA code --QAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAB 0000QAB 000000RG0QAAAAAAAAAAAAAAAAAAAAAAAAAAAA-- 1goF FSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQ GDYDQSR TKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRAME site *RATIO : lcs/trimmed_seq_a = 0.916 (= 76/ 83), lcs/trimmed_seq_b = 0.916 (= 76/ 83) |
Structural alignment by ComSubstruct + manual inspection |
DSSP lhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHllllLLLLL.LLLL....LLLLllLHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLL.... 1goE fsreeadTLRLKVEELEGERSRLEEEKRMLEAQLERralqGDYDQ.SRTK....VLHMslNPTSVARQRLREDHSQLQAECERLRGLLRAME.... | | || | || | || 1goF .......FSREEADTLRLKVEELEGERSRLEEEKRMleaqLERRAlQGDYdqsrTKVL..HMSLNPTSVARQRLREDHSQLQAECERLRGLLrame DSSP .......LLLLLLHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHLLLllllLLLL..LLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHhhll *Z-score 3.4 AR 74 RMSD 5.3A SI 14% |
Structural alignment by DaliLite |
Z-Score:
3.7
AR: 77 RMSD: 5.1A SI: 14% |
||||
1go4 E (len 87) | 1go4
H (len 93) |
DaliLite result |
site 1goE FSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRA LQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRAME code --AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABG1 B10000QB0000000RG0QAAAAAAAAAAAAAAAAAAAAAAAAHAA9-- LCS AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA B 0000QB0000000 G0QAAAAAAAAAAAAAAAAAAAAAAAA AA code --ABRQBQAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAB 0000QB0000000QG0QAAAAAAAAAAAAAAAAAAAAAAAAAAAA-- 1goH AEQSFLFSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQ GDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRAME site *RATIO : lcs/trimmed_seq_a = 0.916 (= 76/ 83), lcs/trimmed_seq_b = 0.854 (= 76/ 89) |
Structural alignment by ComSubstruct + manual inspection |
DSSP
LHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHllLLLL.....lllllLLLLLLllLHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLL.... LHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHllLLLL.....lllllLLLLLLllLHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLL.... 1goE FSREeADTLRLKVEELEGERSRLEEEKRMLEAQLERraLQGD.....ydqsrTKVLHMslNPTSVARQRLREDHSQLQAECERLRGLLRAME.... | | || | || | | || 1goH AEQS.FLFSREEADTLRLKVEELEGERSRLEEEKRMleAQLErralqgdydqSRTKVL..HMSLNPTSVARQRLREDHSQLQAECERLRGLLrame DSSP LLLL.LLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhlllllllLLLLLL..LLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHhhll *Z-score 3.7 AR 77 RMSD 5.1A SI 14% |
Structural alignment by DaliLite |
Z-Score:
4.6
AR: 78 RMSD: 5.8A SI: 51% |
||||
1go4 F (len 87) | 1go4
G (len 100) |
DaliLite result |
site 1goF FSR EEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQ GDYDQSRT KVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRAME code --Q AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAB 0000QAB0 00000RG0QAAAAAAAAAAAAAAAAAAAAAAAAAAAA-- LCS Q AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAB 0000Q B0 00000 G0QAAAAAAAAAAAAAAAAAAAAAAAAAAAA code --QAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABGRG00000Q B0G00000QG0QAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAB01-- 1goG SSAEQSFLFSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQ SRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRAMERGGTV site *RATIO : lcs/trimmed_seq_a = 0.976 (= 81/ 83), lcs/trimmed_seq_b = 0.844 (= 81/ 96) |
Structural alignment by ComSubstruct + manual inspection |
DSSP .....lLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.....hhhHHLLLLlllllLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLL..... 1goF .....fSREEADTLRLKVEELEGERSRLEEEKRMLEAQLE.....rraLQGDYDqsrtkVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRAME..... | | |||||||||||||||||||||||||||||||||||||| 1goG ssaeqsFLFSREEADTLRLKVEELEGERSRLEEEKRMLEAqlerralqGDYDQS..rtkVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRAMErggtv DSSP llhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhlllllLLLLLL..lllLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLlllll *Z-score 4.6 AR 78 RMSD 5.8A SI 51% |
Structural alignment by DaliLite |
Z-Score:
1.8
AR: 55 RMSD: 5.5A SI: 11% |
||||
1go4 G (len 100) | 1go4
H (len 93) |
DaliLite result |
site 1goG SSAEQS FLFSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRAMERGGTV code --QAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABGRG00000QB0G00000QG0QAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAB01-- LCS A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAB 0000QB0 00000QG0QAAAAAAAAAAAAAAAAAAAAAAAAAAAA code --ABRQBQAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAB 0000QB0000000QG0QAAAAAAAAAAAAAAAAAAAAAAAAAAAA-- 1goH AEQSFLFSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQ GDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRAME site *RATIO : lcs/trimmed_seq_a = 0.865 (= 83/ 96), lcs/trimmed_seq_b = 0.933 (= 83/ 89) |
Structural alignment by ComSubstruct + manual inspection |
DSSP ..................LLHHHHHHHHHHHHHHHHHHHHHHHHHHH...hhhhHHHHhhhHHHLllllllllllllllllLLLLHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhllllll 1goG ..................SSAEQSFLFSREEADTLRLKVEELEGERS...rleeEKRMleaQLERralqgdydqsrtkvlhMSLNPTSVARQRLREDHSqlqaecerlrgllramerggtv || | | | | 1goH aeqsflfsreeadtlrlkVEELEGERSRLEEEKRMLEAQLERRALQGdydqsrtKVLH..mSLNP....tsvarqrlredhSQLQAECERLRGLLRAME...................... DSSP lllllllhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHLLLlllllllLLLL..lLLLH....hhhhhhhhhhhhHHHHHHHHHHHHHHHHLL...................... *Z-score 1.8 AR 55 RMSD 5.5A SI 11% |
Structural alignment by DaliLite |
Z-Score:
12.2
AR: 102 RMSD: 7.1A SI: 100% |
||||
1gv2 A (len 102) | 1h89
C (len 115) |
DaliLite result |
site
1gv2 ELIK G PWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVK KTS WTEEEDRIIYQAHKRLGNRWAEIAKLLPGR TDNAIKNHWNSTMR code --00 0 000QAAAAAAAAAAAB00RHRQAAAAABG0RG0QAAAAAAAAB000RG00 0RG 00QAAAAAAAAAAAB00RRQAAAAABGQ0G 0QAAAAAAAA00-- LCS 0 0 000QAAAAAAAAAAA 0RHRQAAAAABG0RG0QAAAAAAAA 000 G 0RG 00QAAAAAAAAAAA 00RRQAAAAABG 0 0QAAAAAAA 0 code --AAB1A01RRQBG0RG000QAAAAAAAAAAA830RHRQAAAAABG0RG0QAAAAAAAA 000 GQBG0RG000QAAAAAAAAAAAG00RRQAAAAABG 0000QAAAAAAAB0QJ-- 1h89 QCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWH NHL NPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLL PGRTDNAIKNHWNSTMRR site +++++++++ +++++++++++++++++++++ +++ +++++++++ ++++++++ ++++++++++++++++ *RATIO : lcs/trimmed_seq_a = 0.878 (= 86/ 98), lcs/trimmed_seq_b = 0.775 (= 86/ 111) |
Structural alignment by ComSubstruct + manual inspection |
DSSP ............LLLLLLLLHHHHHHHHHHHHHHLLLLHHHHHLLLLLLLHHHHHHHHHHLLLLLLLLLLLLHHHHHHHHHHHHHHLLLHHHHHLLLLLLLHHHHHHHHHHHLL. 1gv2 ............ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR. |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1h89 qcqhrwqkvlnpELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRr DSSP lhhhhhhlllllLLLLLLLLHHHHHHHHHHHHHHLLLLHHHHHHLLLLLLHHHHHHHHHHLLLLLLLLLLLLHHHHHHHHHHHHHHLLLHHHHHLLLLLLLHHHHHHHHHLLLLl *Z-score 12.1 AR 102 RMSD 7.1A SI 100% |
Structural alignment by DaliLite |