(1-12)
 |
 |
 |
Z-Score:
3.5
AR: 67 RMSD: 7.5A SI: 51% |
|
| 1l6l A (len 74) | 1l6l
6 (len 75) |
DaliLite result | ||
| site 1l6A EPC VESL VSQYFQTVTDYGKDL MEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGT QPATQ code --R QAAA AAAAAAAAAAAAAAA AAAAAAAAB000QBQAAQAAAAHAAAAAAAAAB0QAAAAAAAABGQG 001-- LCS R QAAA AAAAAAAAAAAAAAA AAAAAAAA AAAA AAAAAAAAAB QAAAAA G 00 code --00RHQAAABHQAAAAAAAAAAAAAAABHRGR0QAAAAAAAA AAAA AAAAAAAAABGQAAAAA G10000000-- 1l66 AKEPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEK SKEQ LTPLIKKAGTELVNFLS YFVELGTQPAQ site *RATIO : lcs/trimmed_seq_a = 0.729 (= 51/ 70), lcs/trimmed_seq_b = 0.718 (= 51/ 71) |
| Structural alignment by ComSubstruct + manual inspection |
| DSSP .....lLLHHHHHHHHHHHHHHHHHHHHHHHHHHHhhlLLLHHHHHHHHHHHHHHHHHHLLHHHHHHHHHhhhLLLLLL.. 1l6A .....ePCVESLVSQYFQTVTDYGKDLMEKVKSPElqaEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVelgTQPATQ.. | | |||||||||||||||||||||||||||||||| 1l66 akepcvESLVSQYFQTVTDYGKDLMEKVKSPELQA...EAKSYFEKSKEQLTPLIKKAGTELVNFLSYFV...ELGTQPaq DSSP llllllHHHHLLHHHHHHHLLHHHHHHHLLLLLLH...HHHHHHHHHHHHHHHHHHHHHLLHHHHHLLLL...LLLLLLll *Z-score 3.5 AR 67 RMSD 7.5A SI 51% |
| Structural alignment by DaliLite |
(1-13)
 |
 |
 |
Z-Score:
3.8
AR: 69 RMSD: 5.8A SI: 17% |
|
| 1l6l B (len 74) | 1l6l
6 (len 75) |
DaliLite result | ||
| site 1l6B EPCV ESLVSQYFQTVTDYGKDLMEKVKSPELQA E AKSYFEKSKEQLTPLIKKAGTELVNF LSYFVELGTQPATQ code --01 QAAAAAAAAAAAAAAAAAAAAAAAAB00R R QAAAAAAAAAGAAAAAAAAABGQAAA AAAAAGR0Q9AB-- LCS 0 QAAA AAAAAAAAAAAAAAA B R R QAAAAAAAAA AAAAAAAAA AAA AAAAAG 0 code --00RHQAAABHQAAAAAAAAAAAAAAA BH RGR0QAAAAAAAAA AAAAAAAAA AAABGQAAAAAG10000000-- 1l66 AKEPCVESLVSQYFQTVTDYGKDLMEKV KS PELQAEAKSYFEKS KEQLTPLIK KAGTELVNFLSYFVELGTQPAQ site *RATIO : lcs/trimmed_seq_a = 0.743 (= 52/ 70), lcs/trimmed_seq_b = 0.732 (= 52/ 71) |
| Structural alignment by ComSubstruct + manual inspection |
| DSSP ..LLLLHHHHHHhHHHHHHHHHHHHHHHHLLlLLLLLLLHHHHLHHHHHHHHHHHHLLHHHHHHLHHHHlllLLLL.... 1l6B ..EPCVESLVSQyFQTVTDYGKDLMEKVKSPeLQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELgtqPATQ.... |||||||||| | | 1l66 akEPCVESLVSQ.YFQTVTDYGKDLMEKVKS.PELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFV...ELGTqpaq DSSP llLLLLHHHHLL.HHHHHHHLLHHHHHHHLL.LLLLHHHHHHHHHHHHHHHHHHHHHHLLHHHHHLLLL...LLLLllll *Z-score 3.8 AR 69 RMSD 5.8A SI 17% |
| Structural alignment by DaliLite |
(1-14)
 |
 |
 |
Z-Score:
3.5
AR: 69 RMSD: 5.0A SI: 41% |
|
| 1l6l C (len 76) | 1l6l
6 (len 75) |
DaliLite result | ||
| site 1l6C AKEPCVESLVSQYFQTVTDYGKDLMEKVKSPELQ A EAKSYFEKSKEQLTPLIKKAGTELVNF LSYFVELGTQPATQ code --000QQAAAAAAAAAAAAAAAAAAAAAAAAAAB G QAAAAAAAA1QAAAAAAAAAABGQAAA AAAAAAB0001Q-- LCS 00 QAAA AAAAAAAAAAAAAAA B G QAAAAAAAA AAAAAAAAAA AAA AAAAA 000 code --00RHQAAABHQAAAAAAAAAAAAAAA BHRGR0QAAAAAAAA AAAAAAAAAA AAABGQAAAAAG10000000-- 1l66 AKEPCVESLVSQYFQTVTDYGKDLMEKV KSPELQAEAKSYFEK SKEQLTPLIK KAGTELVNFLSYFVELGTQPAQ site *RATIO : lcs/trimmed_seq_a = 0.736 (= 53/ 72), lcs/trimmed_seq_b = 0.746 (= 53/ 71) |
| Structural alignment by ComSubstruct + manual inspection |
| DSSP .LLLLL.HHHHHhHHHHHHHHHHHhHHHHHHHHHhLLLLHHHHHLL.LLLLLLLLHHHHLLHHHHHhHHHHllLLLLL..l 1l6C .AKEPC.VESLVsQYFQTVTDYGKdLMEKVKSPElQAEAKSYFEKS.KEQLTPLIKKAGTELVNFLsYFVElgTQPAT..q ||||||||| ||||||||||||||||||| 1l66 aKEPCVeSLVSQ.YFQTVTDYGKD.LMEKVKSPE.LQAEAKSYFEKsKEQLTPLIKKAGTELVNFL.SYFV..ELGTQpaq DSSP lLLLLLhHHHLL.HHHHHHHLLHH.HHHHHLLLL.LLHHHHHHHHHhHHHHHHHHHHHHLLHHHHH.LLLL..LLLLLlll *Z-score 3.5 AR 69 RMSD 5.0A SI 41% |
| Structural alignment by DaliLite |
(1-15)
 |
 |
 |
Z-Score:
4.2
AR: 71 RMSD: 6.0A SI: 94% |
|
| 1l6l G (len 74) | 1l6l
6 (len 75) |
DaliLite result | ||
| site 1l6G AKEPCVESLVSQYFQTVTDYGKDLMEKVKSPELQ AEAKSYFEKSKEQLTPLIKKAG TELVNFLSYFVELGTQPA code --0RRQAAAAAAAAAAAAAAAAAAAAAAAAAAAG 0QAAAAAAAAAAAAAAAAAAAA B0QAAAAAAAAAAB1Q-- LCS 0R QAAA AAAAAAAAAAAAAAA G 0QAAAAAAAAAAAAAAAAAAAA B QAAAAA 1 code --00RHQAAABHQAAAAAAAAAAAAAAA BHRGR0QAAAAAAAAAAAAAAAAAAAAABGQAAAAAG 10000000-- 1l66 AKEPCVESLVSQYFQTVTDYGKDLMEKV KSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSY FVELGTQPAQ site *RATIO : lcs/trimmed_seq_a = 0.743 (= 52/ 70), lcs/trimmed_seq_b = 0.732 (= 52/ 71) |
| Structural alignment by ComSubstruct + manual inspection |
| DSSP LLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHLHHHHHHHHLLLHHHHHHHhhlLLLL.... 1l6G AKEPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVelgTQPA.... ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1l66 AKEPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFV...ELGTqpaq DSSP LLLLLLHHHHLLHHHHHHHLLHHHHHHHLLLLLLHHHHHHHHHHHHHHHHHHHHHHLLHHHHHLLLL...LLLLllll *Z-score 4.2 AR 71 RMSD 6.0A SI 94% |
| Structural alignment by DaliLite |
(1-16)
 |
 |
 |
Z-Score:
2.2
AR: 62 RMSD: 4.4A SI: 5% |
|
| 1l6l H (len 74) | 1l6l
6 (len 75) |
DaliLite result | ||
| site 1l6H AKEPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEA KSYFEKSKEQLTPLIKKAGTELVNF LSYFVELGTQPA code --00RHQAAAAAAAAAAAAAAAAAAAAAAAAB001RH QAAAAAAAAAAAAAAAAAABGQAAA AAAAAAAGAA-- LCS 00RHQAAA AAAAAAAAAAAAAAA B H QAAAAAAAAAAAAAAAAAA AAA AAAAAG code --00RHQAAABHQAAAAAAAAAAAAAAA B HRGR0QAAAAAAAAAAAAAAAAAA AAABGQAAAAAG10000000-- 1l66 AKEPCVESLVSQYFQTVTDYGKDLMEKV K SPELQAEAKSYFEKSKEQLTPLIK KAGTELVNFLSYFVELGTQPAQ site *RATIO : lcs/trimmed_seq_a = 0.757 (= 53/ 70), lcs/trimmed_seq_b = 0.746 (= 53/ 71) |
| Structural alignment by ComSubstruct + manual inspection |
| DSSP ....LLLL.LLHHHHHHHHHHHHHHHHHHHHHHhhhhlllllHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHLLL..... 1l6H ....AKEP.CVESLVSQYFQTVTDYGKDLMEKvkspelqaeaKSYFEKSKEQLTPLIKKAGTELVNFLSYFVElgTQPA..... | | | 1l66 akepCVESlVSQYFQTVTDYGKDLMEKVKSPE.......lqaEAKSYFEKSKEQLTPLIKKAGTELVNFLSYF..VELGtqpaq DSSP llllLLHHhHLLHHHHHHHLLHHHHHHHLLLL.......llhHHHHHHHHHHHHHHHHHHHHHLLHHHHHLLL..LLLLlllll *Z-score 2.2 AR 62 RMSD 4.4A SI 5% |
| Structural alignment by DaliLite |
(1-17)
 |
 |
 |
Z-Score:
3.8
AR: 69 RMSD: 6.4A SI: 43% |
|
| 1l6l J (len 74) | 1l6l
6 (len 75) |
DaliLite result | ||
| site 1l6J EPCVESLVSQYFQTVTDYGKDLMEKVKSPELQ AEAKSYFEKSKEQLTPLIKKAGTELVNF LSYFV ELGTQPATQ code --G1QAAAAAAAAAAAAAAAAAAAAHB1QAAG 0QBQAAAAAAAAAAAAAAAAAABHQAAA AAAAA 0BH0G00-- LCS QAAA AAAAAAAAAAAAAAAB G 0Q AAAAAAAAAAAAAAAAAA AAA AAAAA 0 0 00 code --00RHQAAABHQAAAAAAAAAAAAAAABHR GR0Q AAAAAAAAAAAAAAAAAA AAABGQAAAAAG10000000-- 1l66 AKEPCVESLVSQYFQTVTDYGKDLMEKVKSP ELQA EAKSYFEKSKEQLTPLIK KAGTELVNFLSYFVELGTQPAQ site *RATIO : lcs/trimmed_seq_a = 0.757 (= 53/ 70), lcs/trimmed_seq_b = 0.746 (= 53/ 71) |
| Structural alignment by ComSubstruct + manual inspection |
| DSSP .....LLLLHHHHHHHHHHHHHHHHHHHHLLllHHHHHLLHhHHHHHHHHHHHHHHHHHHLHHHHHHHHHhlLLLLLLL. 1l6J .....EPCVESLVSQYFQTVTDYGKDLMEKVksPELQAEAKsYFEKSKEQLTPLIKKAGTELVNFLSYFVelGTQPATQ. | | |||||||||||||||||||||||||||| 1l66 akepcVESLVSQYFQTVTDYGKDLMEKVKSP..ELQAEAKS.YFEKSKEQLTPLIKKAGTELVNFLSYFV..ELGTQPAq DSSP lllllLHHHHLLHHHHHHHLLHHHHHHHLLL..LLLHHHHH.HHHHHHHHHHHHHHHHHLLHHHHHLLLL..LLLLLLLl *Z-score 3.8 AR 69 RMSD 6.4A SI 43% |
| Structural alignment by DaliLite |
(1-18)
 |
 |
 |
Z-Score:
3.4
AR: 65 RMSD: 6.9A SI: 49% |
|
| 1l6l S (len 74) | 1l6l
6 (len 75) |
DaliLite result | ||
| site 1l6S EPC VESL VSQYFQTVTDYGKDL MEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQ PATQ code --R QAAA AAAAAAAAAAAAAAA AAAAAAAAB000QBQAAQAAAAHAAAAAAAAAB0QAAAAAAAAAB1QG 00-- LCS R QAAA AAAAAAAAAAAAAAA AAAAAAAA AAAA AAAAAAAAAB QAAAAA G 00 code --00RHQAAABHQAAAAAAAAAAAAAAABHRGR0QAAAAAAAA AAAA AAAAAAAAABGQAAAAA G10000000-- 1l66 AKEPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEK SKEQ LTPLIKKAGTELVNFLS YFVELGTQPAQ site *RATIO : lcs/trimmed_seq_a = 0.729 (= 51/ 70), lcs/trimmed_seq_b = 0.718 (= 51/ 71) |
| Structural alignment by ComSubstruct + manual inspection |
| DSSP ......lLLHHHHHHHHHHHHHHHHHHHHHhHHHHHhhlLLLHHHHHHHHHHHHHHHHHHLLHHHHHhHHHHlllLLLLL... 1l6S ......ePCVESLVSQYFQTVTDYGKDLMEkVKSPElqaEAKSYFEKSKEQLTPLIKKAGTELVNFLsYFVElgtQPATQ... | | |||||||||||||||||||||||||||| || 1l66 akepcveSLVSQYFQTVTDYGKDLMEKVKS.PELQA...EAKSYFEKSKEQLTPLIKKAGTELVNFL.SYFV...ELGTQpaq DSSP llllllhHHHLLHHHHHHHLLHHHHHHHLL.LLLLH...HHHHHHHHHHHHHHHHHHHHHLLHHHHH.LLLL...LLLLLlll *Z-score 3.4 AR 65 RMSD 6.9A SI 49% |
| Structural alignment by DaliLite |
(1-19)
 |
 |
 |
Z-Score:
3.4
AR: 68 RMSD: 4.7A SI: 4% |
|
| 1l6l U (len 76) | 1l6l
6 (len 75) |
DaliLite result | ||
| site 1l6U AKEPC VESLVSQYFQTVTDYGKDLMEKVKSPEL QA EAKSYFEKSKEQLTPLIKKAG TELVNFLSYFVELGTQPATQ code --000 QAAAAAAAAAAAAAAAAAAAAAAAAABA GG QAAAAAAAAAAAAAAAAAAAA BGQAAAAAAAAAAAHAAA-- LCS 00 QAAA AAAAAAAAAAAAAAA B G QAAAAAAAAAAAAAAAAAAAA BGQAAAAA code --00RHQAAABHQAAAAAAAAAAAAAAA BHRGR0QAAAAAAAAAAAAAAAAAAAAABGQAAAAAG10000000-- 1l66 AKEPCVESLVSQYFQTVTDYGKDLMEKV KSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPAQ site *RATIO : lcs/trimmed_seq_a = 0.722 (= 52/ 72), lcs/trimmed_seq_b = 0.732 (= 52/ 71) |
| Structural alignment by ComSubstruct + manual inspection |
| DSSP llllLHHHhHHHHHHHHhHHHHHHHHHHHHHHHLLlLHHHHHLLLLLLLHHHHHHHHLHHhHHHHHHHHHHLLLLL....... 1l6U akepCVESlVSQYFQTVtDYGKDLMEKVKSPELQAeAKSYFEKSKEQLTPLIKKAGTELVnFLSYFVELGTQPATQ....... | | | 1l66 ....AKEP.CVESLVSQ.YFQTVTDYGKDLMEKVK.SPELQAEAKSYFEKSKEQLTPLIK.KAGTELVNFLSYFVElgtqpaq DSSP ....LLLL.LLHHHHLL.HHHHHHHLLHHHHHHHL.LLLLLHHHHHHHHHHHHHHHHHHH.HHHLLHHHHHLLLLLlllllll *Z-score 3.4 AR 68 RMSD 4.7A SI 4% |
| Structural alignment by DaliLite |
(1-20)
|
|
 |
 |
Z-Score:
3.1
AR: 66 RMSD: 4.2A SI: 14% |
|
| 1l6l A (len 74) | 1l6l
8 (len 74) |
DaliLite result | ||
| site 1l6A EPCVESLVSQYFQTVTDYGKDLMEKVKSPEL Q AEAK SYFEKSKEQLTPLIKKAGTELVNFL SYFVELGTQP ATQ code --RQAAAAAAAAAAAAAAAAAAAAAAAAAAB 0 00QB QAAQAAAAHAAAAAAAAAB0QAAAA AAAABGQG00 1-- LCS Q AAAAAAAA AAAAAAAAAAAAA B 0 00 QAA AAAA AAAAAAAAA QA AAAABGQ 1 code --HQB1AAAAAAAABAAAAAAAAAAAAA BG0R00RG1QAA AAAA AAAAAAAAA QAB1B1AAAABGQAAAA1A-- 1l68 AKEPCVESLVSQYFQTVTDYGKDLMEKV KSPELQAEAKSY FEKS KEQLTPLIK KAGTELVNFLSYFVELGTQPA site *RATIO : lcs/trimmed_seq_a = 0.743 (= 52/ 70), lcs/trimmed_seq_b = 0.743 (= 52/ 70) |
| Structural alignment by ComSubstruct + manual inspection |
| DSSP ...lLLHHHHHHHHHHHHHHHHHHHHHHHhHHHHhlllLHHHhHHHHHHHHHHHHHHLLhHHHHHHHHHHHLL..LLLL.. 1l6A ...ePCVESLVSQYFQTVTDYGKDLMEKVkSPELqaeaKSYFeKSKEQLTPLIKKAGTElVNFLSYFVELGTQ..PATQ.. |||| || | || 1l68 akepCVESLVSQYFQTVTDYGKDLMEKVK.SPEL....QAEA.KSYFEKSKEQLTPLIK.KAGTELVNFLSYFveLGTQpa DSSP lllhHHHHHHHHHHHHHHHHHHHHHHHHL.LLLL....LLLL.HHHHHHHHHLHHHHHH.HHHLLLHHHHHHHhhHLLLll *Z-score 3.1 AR 66 RMSD 4.2A SI 14% |
| Structural alignment by DaliLite |
(1-21)
|
|
 |
 |
Z-Score:
3.3
AR: 67 RMSD: 3.1A SI: 3% |
|
| 1l6l B (len 74) | 1l6l
8 (len 74) |
DaliLite result | ||
| site 1l6B EPCVE SLVSQYFQTVTDYGKDLMEKVKSPELQA E AKSYFEKSKEQLTPLIKKAGTEL VNFL SYFVELGTQPATQ code --01Q AAAAAAAAAAAAAAAAAAAAAAAAB00R R QAAAAAAAAAGAAAAAAAAABGQ AAAA AAAAGR0Q9AB-- LCS Q AAAAAAAA AAAAAAAAAAAAA B 0R R QAAAAAAAAA AAAAAA AB AAAA AAAA A code --HQB1AAAAAAAABAAAAAAAAAAAAA BG0R00RG1QAAAAAAAAA AAAAAAQ AB1B1AAAABGQAAAA1 A-- 1l68 AKEPCVESLVSQYFQTVTDYGKDLMEKV KSPELQAEAKSYFEKSKEQ LTPLIKK AGTELVNFLSYFVELGT QPA site *RATIO : lcs/trimmed_seq_a = 0.757 (= 53/ 70), lcs/trimmed_seq_b = 0.757 (= 53/ 70) |
| Structural alignment by ComSubstruct + manual inspection |
| DSSP ...LLLLHHHHHHHHHHHHHHHHHHHHHHHlllLLLLllLHHHhLHHHHHHHHHHHHLLhHHHHHLHHHHLLLLLLL.... 1l6B ...EPCVESLVSQYFQTVTDYGKDLMEKVKspeLQAEakSYFEkSKEQLTPLIKKAGTElVNFLSYFVELGTQPATQ.... | | 1l68 akePCVESLVSQYFQTVTDYGKDLMEKVKS...PELQ..AEAK.SYFEKSKEQLTPLIK.KAGTELVNFLSYFVELGtqpa DSSP lllHHHHHHHHHHHHHHHHHHHHHHHHHLL...LLLL..LLLH.HHHHHHHHLHHHHHH.HHHLLLHHHHHHHHHHLllll *Z-score 3.3 AR 67 RMSD 3.1A SI 3% |
| Structural alignment by DaliLite |
(1-22)
|
|
 |
 |
Z-Score:
3.6
AR: 67 RMSD: 3.1A SI: 10% |
|
| 1l6l H (len 74) | 1l6l
8 (len 74) |
DaliLite result | ||
| site 1l6H AKEPCVE SLVSQYFQTVTDYGKDLMEKVKSPE L QAEA KSYFEKSKEQLTPLIKKAGTELV NFLS YFVE LGTQPA code --00RHQ AAAAAAAAAAAAAAAAAAAAAAAAB 0 01RH QAAAAAAAAAAAAAAAAAABGQA AAAA AAAA AGAA-- LCS HQ AAAAAAAA AAAAAAAAAAAAA B 0 0 R QAAAAAAAAAAAAAAA QA AAAA AAAA A code --HQB1AAAAAAAABAAAAAAAAAAAAA BG0R00RG1QAAAAAAAAAAAAAAA QAB1B1AAAABGQAAAA1A-- 1l68 AKEPCVESLVSQYFQTVTDYGKDLMEKV KSPELQAEAKSYFEKSKEQLTPLIK KAGTELVNFLSYFVELGTQPA site *RATIO : lcs/trimmed_seq_a = 0.771 (= 54/ 70), lcs/trimmed_seq_b = 0.771 (= 54/ 70) |
| Structural alignment by ComSubstruct + manual inspection |
| DSSP ....LLLL.LLHHHHHHHHHHHHHHHHHHHhhHHHHhllLLLHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHLLL.. 1l6H ....AKEP.CVESLVSQYFQTVTDYGKDLMekVKSPelqAEAKsYFEKSKEQLTPLIKKAgTELVNFLSYFVELGTQPA.. | | |||| | 1l68 akepCVESlVSQYFQTVTDYGKDLMEKVKS..PELQ...AEAK.SYFEKSKEQLTPLIKK.AGTELVNFLSYFVELGTQpa DSSP lllhHHHHhHHHHHHHHHHHHHHHHHHHLL..LLLL...LLLH.HHHHHHHHLHHHHHHH.HHLLLHHHHHHHHHHLLLll *Z-score 3.6 AR 67 RMSD 3.1A SI 10% |
| Structural alignment by DaliLite |
(1-23)
|
|
 |
 |
Z-Score:
3.0
AR: 65 RMSD: 4.3A SI: 11% |
|
| 1l6l S (len 74) | 1l6l
8 (len 74) |
DaliLite result | ||
| site 1l6S EPCVESLVSQYFQTVTDYGKDLMEKVKSPEL Q AEAK SYFEKSKEQLTPLIKKAGTELV NFLS YFVELGTQPATQ code --RQAAAAAAAAAAAAAAAAAAAAAAAAAAB 0 00QB QAAQAAAAHAAAAAAAAAB0QA AAAA AAAAB1QG00-- LCS Q AAAAAAAA AAAAAAAAAAAAAB 0 00 QAA AAAA AAAAAAAAA QA AAAA AAAA 1 code --HQB1AAAAAAAAB AAAAAAAAAAAAABG0R00RG1QAA AAAA AAAAAAAAA QAB1B1AAAABGQAAAA 1A-- 1l68 AKEPCVESLVSQYFQ TVTDYGKDLMEKVKSPELQAEAKSY FEKS KEQLTPLIK KAGTELVNFLSYFVELG TQPA site *RATIO : lcs/trimmed_seq_a = 0.757 (= 53/ 70), lcs/trimmed_seq_b = 0.757 (= 53/ 70) |
| Structural alignment by ComSubstruct + manual inspection |
| DSSP ...lLLHHHHHHHHHHHHHHHHHHHHHHHhHHHHhlllLHHHhHHHHHHHHHHHHHHLLhHHHHHHHHHLLLLLLL....l 1l6S ...ePCVESLVSQYFQTVTDYGKDLMEKVkSPELqaeaKSYFeKSKEQLTPLIKKAGTElVNFLSYFVELGTQPAT....q |||| || | 1l68 akepCVESLVSQYFQTVTDYGKDLMEKVK.SPEL....QAEA.KSYFEKSKEQLTPLIK.KAGTELVNFLSYFVELgtqpa DSSP lllhHHHHHHHHHHHHHHHHHHHHHHHHL.LLLL....LLLL.HHHHHHHHHLHHHHHH.HHHLLLHHHHHHHHHHlllll *Z-score 3.0 AR 65 RMSD 4.3A SI 11% |
| Structural alignment by DaliLite |
[The DSSP code]
- H = alpha helix
- B = residue in isolated beta-bridge
- E = extended strand, participates in beta ladder
- G = 3-helix (3/10 helix)
- I = 5 helix (pi helix)
- T = hydrogen bonded turn
- S = bend
- L = no assigned structure
[The 5-tile code]
- 0 = DDDDD (extended strand, small blue spheres)
- 1 = DDDDU
- 2 = DDDUD
- 3 = DDDUU
- 8 = DUDDD
- 9 = DUDDU
- A = DUDUD (helix, large red spheres)
- B = DUDUU (turn, large yellow spheres)
- G = UDDDD
- H = UDDDU
- I = UDDUD
- J = UDDUU
- O = UUDDD
- P = UUDDU
- Q = UUDUD (turn, large yellow spheres)
- R = UUDUU (turn, large yellow spheres)