• Backbone structures are obtained using ProteinViewer, where N-terminal is colored red and C-terminal blue.
• Click the images to view larger image.
• Click PDB IDs to view the corresponding PDB file
• See the bottom for brief explanation of the DSSP codes and the 5-tile codes. 
• The "site" row indicates active site residues:
          "*" denotes active sites registered in SwissProt/UniProt.
          "+" denotes active sites registered in PROSITE/UniProt.
           Residues registered in both of them are denoted by "*."
• In the images of superimposition, the C-terminal of the first sequence is connected with the N-terminal of the second sequecne
  (because of the DaliLite output format).
  

(1) Cluster 36 (cont'd)

				Z-Score: 24.9 AR: 228 RMSD: 16.4A SI: 96%
1m1g D (len 239)	1npp D (len 240)		DaliLite result

site  1m1g     EKKWYALQVEPGKENEAKENLLKVLELEGLKDLVDEVIVPAEEKVVIRAQGKEKYRLSLKGNARDISVLGKKGVTTFRIENGEVKVVESV code     --000000000QBQAAAAAAAAAAAAABRPQABG00000RG00000000R00000000RG0000000000R000000000RRG000R000 LCS        000000000QBQAAAAAAAAAAAAABR QABG 0000RG00000000R  0 0000RG0000000000R000000000RRG000R00 code --G000000000000QBQAAAAAAAAAAAAABR1QABGO0000RG00000000RRG0R0000RG0000000000R000000000RRG000R000 1npp VQELEKKWYALQVEPGKENEAKENLLKVLELEGLKDLVDEVIVPAEEKVVIRAQGKEKYRLSLKGNARDISVLGKKGVTTFRIENGEVKVVESV site  site  1m1g E  GDTCVNAPPISKPGQKITCKENKTEAKIVLDNKIFPGYIL  IKAHM N DKLLMAIEKTPHVFRPVMVGGKPVPLKEEEVQNILNQIKRG VK code 0  R0QAABG0000G0RG000RQABR00000000RQG000G00  00000 0 QAAAAAAABG0RG000000RRG00000QAAAAAAAAAABG0 00 LCS  0  R QA BG0000 0RG000 QABR0000000 R  000 00  00000 0 QAAAAAAABG0RG000000RRG00000QAAAAAAAAA B   00 code 0BGR QA BG000000RG0000QABR0000000 R  000 00RG00000R00QAAAAAAABG0RG000000RRG00000QAAAAAAAAA BRRR00 1npp EGDT CV NAPPISKPGQKITCKENKTEAKIVL D  NKI FPGYILIKAHMNDKLLMAIEKTPHVFRPVMVGGKPVPLKEEEVQNILNQ IKRGVK site   site                                                ++++++++++ 1m1g PSKVE   FEK GDQVRVIEGPFMNFTGTVEEVH PEKR KLTVMIS IFGRMTPVELDFDQVEKI code 1R00R   00R 000000R00QB0R000000000 0QBR 00R0R00 RRRGR000000QABG0-- LCS   R0 R   00R 000000 0 QB0R00000 000 0  R 00 0 00 RR   000000    0 code  R0 R1OG00RG000000 0 QB0R00000R00010  RG00003000RR03 000000    0G-- 1npp  PS KVEFEKGDQVRVIE G PFMNFTGTVEEVHPE  KRKLTVMISIFGRM TPVELD    FDQV site                                                +++++ +++++ *RATIO :  lcs/trimmed_seq_a = 0.864 (=  203/  235), lcs/trimmed_seq_b = 0.860 (=  203/  236)

Structural alignment by ComSubstruct + manual inspection

DSSP ....LLEEEEEEELLLLHHHHHHHHHHHHHHLLLHHHEEEEELLLEEEEEEEELLLEEEEEELLLLLLEEEEELLLLEEEEEELLLLEEEEELL 1m1g ....EKKWYALQVEPGKENEAKENLLKVLELEGLKDLVDEVIVPAEEKVVIRAQGKEKYRLSLKGNARDISVLGKKGVTTFRIENGEVKVVESV          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1npp vqelEKKWYALQVEPGKENEAKENLLKVLELEGLKDLVDEVIVPAEEKVVIRAQGKEKYRLSLKGNARDISVLGKKGVTTFRIENGEVKVVESV  DSSP llllLLEEEEEEELLLLHHHHHHHHHHHHHHLLLHHHEEEEELLLEEEEEEEELLEEEEEEELLLLLEEEEEELLLLEEEEEEELLEEEEEELL DSSP LLLHHHLLLLLLLLLLEEEELLLLEEEEEEEELLLLLLEEEEEELLLHHHHHHHHHLLLEEEELEELLEELLLLHHHHHHHHHHHH.hlll 1m1g EGDTCVNAPPISKPGQKITCKENKTEAKIVLDNKIFPGYILIKAHMNDKLLMAIEKTPHVFRPVMVGGKPVPLKEEEVQNILNQIK.rgvk      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1npp EGDTCVNAPPISKPGQKITCKENKTEAKIVLDNKIFPGYILIKAHMNDKLLMAIEKTPHVFRPVMVGGKPVPLKEEEVQNILNQIKrgvkp DSSP LLLLHHHLLLLLLLLLEEEELLLLEEEEEEEELLLLLLEEEEEELLLHHHHHHHHLLLLEEEELEELLEELEELHHHHHHHHHLLLlllll DSSP lllLLLLlLLEEELLLLLLLLLEEEEEEEELLLLEEEEEEEELLEEEEEEEElLLLEel 1m1g pskVEFEkGDQVRVIEGPFMNFTGTVEEVHPEKRKLTVMISIFGRMTPVELDfDQVEki              |||||||||||||||||||||||||||||||||||||||||||| 1npp skvEFEK.GDQVRVIEGPFMNFTGTVEEVHPEKRKLTVMISIFGRMTPVELD.FDQV.. DSSP lllLLLL.LLEEELLLLLLLLLEEEEEELLLLLLLEEEEEEELLEEEEEEEL.LLLL.. *Z-score 24.9  AR 228  RMSD 16.4A  SI 96%

Structural alignment by DaliLite

				Z-Score: 23.3 AR: 236 RMSD: 6.2A SI: 100%
1m1g C (len 244)	1npp B (len 241)		DaliLite result

site  1m1g QVQELEKKWYALQVEPGKENEAKENLLKVLELEGLKDLVDEVIVPAEEKVVIRAQ GKEKYRLSLKGNARDISVLGKKGVTTFRIENGEVK code --R1000000000000QGQAAAAAAAAAAAAABRRQABGR0000RG00000000R RG000000RG0000000000RR00000000ROG00 LCS       00000000000Q QAAAAAAAAAAAAABR QABGR0000RG0000000 R R 000000RG0000000000R 00000000R G00 code    --00000000000QBQAAAAAAAAAAAAABRHQABGR0000RG0000000 R1R0000000RG0000000000R000000000RRG00 1npp    ELEKKWYALQVEPGKENEAKENLLKVLELEGLKDLVDEVIVPAEEKVVIR AQGKEKYRLSLKGNARDISVLGKKGVTTFRIENGEVK site  site  1m1g VVESVEGD TCVNAPPISKPGQKITCKENKTEAKIVLDN KIFPGYILIKAHMNDKLLMAIEKTPHVFRPVMVGGKPVPLKEEEVQNILNQ  I code 0R0001RG QAABG000001RG000OQABRG0000000R QG00RG00000R00QAAAAAAABG0RG000000RRG00000QAAAAAAAAH  B LCS  0R000 RG QA BG00000 RG000 QABR 0000000  QG00RG00000 00QAAAAAAABG0RG000000RRG00000QAAAAAAAA   B code 0R0000RGRQA BG000000RG000RQABR 000000030QG00RG00000O00QAAAAAAABG0RG000000RRG00000QAAAAAAAAAAAB 1npp VVESVEGDTCV NAPPISKPGQKITCKENK TEAKIVLDNKIFPGYILIKAHMNDKLLMAIEKTPHVFRPVMVGGKPVPLKEEEVQNILNQIKR site   site                                                  ++++++++++ 1m1g KRGVKPSKV    EFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTVMISIFGRMTPVELD FDQVEKI code GR0000R00    0000R00000R00QB0R0000000000QBRG0000000RRG3000000 QABG0-- LCS   R    R00    00  R00000 00QB0R00000 0 00  RG000000 RR  000000 QABG0 code RR    R00RRRR00  R00000000QB0R00000R0R00RRRG000000 RR000000000QABG0-- 1npp GV    KPSKVEFEK  GDQVRVIEGPFMNFTGTVEEVHPEKRKLTVMIS IFGRMTPVELDFDQVEKI site                                                    ++++++++++ *RATIO :  lcs/trimmed_seq_a = 0.867 (=  208/  240), lcs/trimmed_seq_b = 0.878 (=  208/  237)

Structural alignment by ComSubstruct + manual inspection

DSSP lllLLLLEEEEEEELLLLHHHHHHHHHHHHHHHLLHHHEEEEELLLEEEEEEEELLLEEEEEELLLLLEEEEEELLLLEEEEEELLLLEE 1m1g qvqELEKKWYALQVEPGKENEAKENLLKVLELEGLKDLVDEVIVPAEEKVVIRAQGKEKYRLSLKGNARDISVLGKKGVTTFRIENGEVK         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1npp ...ELEKKWYALQVEPGKENEAKENLLKVLELEGLKDLVDEVIVPAEEKVVIRAQGKEKYRLSLKGNARDISVLGKKGVTTFRIENGEVK  DSSP ...LLLLEEEEEEELLLLHHHHHHHHHHHHHHHLLHHHEEEEELLLEEEEEEEELLEEEEEEELLLLLEEEEEELLLLEEEEEEELLEEE DSSP EEELLLLLLHHHLLLLLLLLLEEEELLLLEEEEEEEELLLLLLEEEEEELLLHHHHHHHHLLLLEEEELEELLEELLLLHHHHHHHHHHH 1m1g VVESVEGDTCVNAPPISKPGQKITCKENKTEAKIVLDNKIFPGYILIKAHMNDKLLMAIEKTPHVFRPVMVGGKPVPLKEEEVQNILNQI      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1npp VVESVEGDTCVNAPPISKPGQKITCKENKTEAKIVLDNKIFPGYILIKAHMNDKLLMAIEKTPHVFRPVMVGGKPVPLKEEEVQNILNQI DSSP EEELLLLLHHHHLLLLLLLLLEEEELLLLEEEEEEEELLLLLLEEEEEELLLHHHHHHHHLLLLEEEELEELLEELLLLHHHHHHHHHHH DSSP LLLllllLLLLLLLLEEEELLLLLLLLEEEEEEEELlLLEEEEEEEELLEEEEEEEEHHHEEEL 1m1g KRGvkpsKVEFEKGDQVRVIEGPFMNFTGTVEEVHPeKRKLTVMISIFGRMTPVELDFDQVEKI      |||    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| 1npp KRGvkpsKVEFEKGDQVRVIEGPFMNFTGTVEEVHPeKRKLTVMISIFGRMTPVELDFDQVEKI DSSP HHLllllLLLLLLLLEEEELLLLLLLLEEEEEELLLlLLEEEEEEEELLEEEEEEEELLLEEEL *Z-score 23.3  AR 236  RMSD 6.2A  SI 100%

Structural alignment by DaliLite

				Z-Score: 23.2 AR: 231 RMSD: 16.5A SI: 97%
1npp B (len 241)	1npp D (len 240)		DaliLite result

site  1npB   ELEKKWYALQVEPGKENEAKENLLKVLELEGLKDLVDEVIVPAEEKVVIR AQGKEKYRLSLKGNARDISVLGKKGVTTFRIENGEVKVVE code   --00000000000QBQAAAAAAAAAAAAABRHQABGR0000RG0000000 R1R0000000RG0000000000R000000000RRG000R0 LCS      00000000000QBQAAAAAAAAAAAAABR QABG 0000RG0000000 R R 0 0000RG0000000000R000000000RRG000R0 code --G000000000000QBQAAAAAAAAAAAAABR1QABGO0000RG00000000R RG0R0000RG0000000000R000000000RRG000R0 1npD VQELEKKWYALQVEPGKENEAKENLLKVLELEGLKDLVDEVIVPAEEKVVIRAQ GKEKYRLSLKGNARDISVLGKKGVTTFRIENGEVKVVE site  site  1npB SVEGDTCVNAPPISKPGQKITCKENKTEAKIVLDNKIFPGYILIKAHMNDKLLMAIEKTPHVFRPVMVGGKPVPLKEEEVQNILNQIKRG code 000RGRQABG000000RG000RQABR000000030QG00RG00000O00QAAAAAAABG0RG000000RRG00000QAAAAAAAAAAABR LCS  000 GRQABG000000RG000 QABR0000000 0  00RG00000 00QAAAAAAABG0RG000000RRG00000QAAAAAAAAA  BR code 000BGRQABG000000RG0000QABR0000000R00000RG00000R00QAAAAAAABG0RG000000RRG00000QAAAAAAAAA  BR 1npD SVEGDTCVNAPPISKPGQKITCKENKTEAKIVLDNKIFPGYILIKAHMNDKLLMAIEKTPHVFRPVMVGGKPVPLKEEEVQNILNQ  IK site   site                                               ++++++++++ 1npB VKPSKVEF  EKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTVM IS IFGRMTPVELDFDQVEKI code RR00RRRR  00R00000000QB0R00000R0R00RRRG0000 00 RR000000000QABG0-- LCS  RR00R R   00R 0000000QB0R00000R0 00  RG0000 00 RR0 0000000   G code RR00R0R1OG00RG0000000QB0R00000R0 0010RG00003000RR030000000   G-- 1npD RGVKPSKVEFEKGDQVRVIEGPFMNFTGTVEE VHPEKRKLTVMISIFGRMTPVELDF   DQV site                                               ++++++++++ *RATIO :  lcs/trimmed_seq_a = 0.899 (=  213/  237), lcs/trimmed_seq_b = 0.903 (=  213/  236)

Structural alignment by ComSubstruct + manual inspection

DSSP ..LLLLEEEEEEELLLLHHHHHHHHHHHHHHHLLHHHEEEEELLLEEEEEEEELLEEEEEEELLLLLEEEEEELLLLEEEEEEELLEEEEEE 1npB ..ELEKKWYALQVEPGKENEAKENLLKVLELEGLKDLVDEVIVPAEEKVVIRAQGKEKYRLSLKGNARDISVLGKKGVTTFRIENGEVKVVE        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1npD vqELEKKWYALQVEPGKENEAKENLLKVLELEGLKDLVDEVIVPAEEKVVIRAQGKEKYRLSLKGNARDISVLGKKGVTTFRIENGEVKVVE  DSSP llLLLLEEEEEEELLLLHHHHHHHHHHHHHHLLLHHHEEEEELLLEEEEEEEELLEEEEEEELLLLLEEEEEELLLLEEEEEEELLEEEEEE DSSP LLLLLHHHHLLLLLLLLLEEEELLLLEEEEEEEELLLLLLEEEEEELLLHHHHHHHHLLLLEEEELEELLEELLLLHHHHHHHHHHHH.hl 1npB SVEGDTCVNAPPISKPGQKITCKENKTEAKIVLDNKIFPGYILIKAHMNDKLLMAIEKTPHVFRPVMVGGKPVPLKEEEVQNILNQIK.rg      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1npD SVEGDTCVNAPPISKPGQKITCKENKTEAKIVLDNKIFPGYILIKAHMNDKLLMAIEKTPHVFRPVMVGGKPVPLKEEEVQNILNQIKrgv DSSP LLLLLLHHHLLLLLLLLLEEEELLLLEEEEEEEELLLLLLEEEEEELLLHHHHHHHHLLLLEEEELEELLEELEELHHHHHHHHHLLLlll DSSP llllLLLLlLLLEEEELLLLLLLLEEEEEELLLLLLEEEEEEEELLEEEEEEEElLLEEel 1npB vkpsKVEFeKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTVMISIFGRMTPVELDfDQVEki               ||||||||||||||||||||||||||||||||||||||||||||| 1npD kpskVEFE.KGDQVRVIEGPFMNFTGTVEEVHPEKRKLTVMISIFGRMTPVELD.FDQV.. DSSP llllLLLL.LLLEEELLLLLLLLLEEEEEELLLLLLLEEEEEEELLEEEEEEEL.LLLL.. *Z-score 23.2  AR 231  RMSD 16.5A  SI 97%

Structural alignment by DaliLite

				Z-Score: 25.9 AR: 205 RMSD: 15.8A SI: 100%
1m1g C (len 244)	1npp D (len 240)		DaliLite result

site  1m1g QVQELEKKWYALQVEPGKENEAKENLLKVLELEGLKDLVDEVIVPAEEKVVIRAQGKEKYRLSLKGNARDISVLGKKGVTTFRIENGEVK code --R1000000000000QGQAAAAAAAAAAAAABRRQABGR0000RG00000000RRG000000RG0000000000RR00000000ROG00 LCS      000000000000Q QAAAAAAAAAAAAABR QABG 0000RG00000000RRG0 0000RG0000000000R 00000000R G00 code  --G000000000000QBQAAAAAAAAAAAAABR1QABGO0000RG00000000RRG0R0000RG0000000000R000000000RRG00 1npp  VQELEKKWYALQVEPGKENEAKENLLKVLELEGLKDLVDEVIVPAEEKVVIRAQGKEKYRLSLKGNARDISVLGKKGVTTFRIENGEVK site  site  1m1g VVESVEGD TCVNAPPISKPGQKITCKENKTEAKIVLDNKIFP GYILIKAHMNDKLLMAIEKTPHVFRPVMVGGKPVPLKEEEVQNILNQI code 0R0001RG QAABG000001RG000OQABRG0000000RQG00 RG00000R00QAAAAAAABG0RG000000RRG00000QAAAAAAAAHB LCS  0R000  G QA BG00000 RG000 QABR 0000000R  00 RG00000R00QAAAAAAABG0RG000000RRG00000QAAAAAAAA B code 0R0000BGRQA BG000000RG0000QABR 0000000R00000RG00000R00QAAAAAAABG0RG000000RRG00000QAAAAAAAAAB 1npp VVESVEGDTCV NAPPISKPGQKITCKENK TEAKIVLDNKIFPGYILIKAHMNDKLLMAIEKTPHVFRPVMVGGKPVPLKEEEVQNILNQI site   site                                                      ++++++++++ 1m1g KRGVKPSKV EF   EKG DQVRVIEGPFMNFTGTV EEV HPEKRKLTVM ISIFGRMTPVELDFDQVEKI code GR0000R00 00   00R 00000R00QB0R00000 000 00QBRG0000 000RRG3000000QABG0-- LCS   R    R00 0    00R 00000 00QB0R00000 000 0   RG0000 000RR 3000000    0 code RR    R00R0R1OG00RG00000 00QB0R00000R00010   RG00003000RR03000000    0G-- 1npp KR    GVKPSKVEFEKGDQVRVI EGPFMNFTGTVEEVHPE   KRKLTVMISIFGRMTPVELD    FDQV site                                                       ++++++++++ *RATIO :  lcs/trimmed_seq_a = 0.867 (=  208/  240), lcs/trimmed_seq_b = 0.881 (=  208/  236)

Structural alignment by ComSubstruct + manual inspection

DSSP lLLLLLLEEEEEEELLLLHHHHHHHHHHHHHHHLLHHHEEEEELLLEEEEEEEELLLEEEEEELLLLLEEEEEELLLLEEEEEELLLLEE 1m1g qVQELEKKWYALQVEPGKENEAKENLLKVLELEGLKDLVDEVIVPAEEKVVIRAQGKEKYRLSLKGNARDISVLGKKGVTTFRIENGEVK       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1npp .VQELEKKWYALQVEPGKENEAKENLLKVLELEGLKDLVDEVIVPAEEKVVIRAQGKEKYRLSLKGNARDISVLGKKGVTTFRIENGEVK  DSSP .LLLLLLEEEEEEELLLLHHHHHHHHHHHHHHLLLHHHEEEEELLLEEEEEEEELLEEEEEEELLLLLEEEEEELLLLEEEEEEELLEEE DSSP EEELLLLLLHHHLLLLLLLLLEEEELLLLEEEEEEEELLLLLLEEEEEELLLHHHHHHHHLLLLEEEELEELLEELLLLHHHHHHHHHHH 1m1g VVESVEGDTCVNAPPISKPGQKITCKENKTEAKIVLDNKIFPGYILIKAHMNDKLLMAIEKTPHVFRPVMVGGKPVPLKEEEVQNILNQI      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1npp VVESVEGDTCVNAPPISKPGQKITCKENKTEAKIVLDNKIFPGYILIKAHMNDKLLMAIEKTPHVFRPVMVGGKPVPLKEEEVQNILNQI DSSP EEELLLLLLHHHLLLLLLLLLEEEELLLLEEEEEEEELLLLLLEEEEEELLLHHHHHHHHLLLLEEEELEELLEELEELHHHHHHHHHLL DSSP LLllllllllllLLLEEEElllllLLLEEEEeeeelllleeeEEEEELLEEEeeeeehhheeel 1m1g KRgvkpskvefeKGDQVRViegpfMNFTGTVeevhpekrkltVMISIFGRMTpveldfdqveki      ||          |||||||     |||||||           |||||||||| 1npp KRgvkpskvefeKGDQVRViegpfMNFTGTVeevhpekrkltVMISIFGRMT...pveldfdqv DSSP LLllllllllllLLLEEELlllllLLLEEEEeellllllleeEEEEELLEEE...eeeelllll *Z-score 25.9  AR 205  RMSD 15.8A  SI 100%

Structural alignment by DaliLite

				Z-Score: 25.3 AR: 235 RMSD: 16.7A SI: 95%
1npp D (len 240)	1npr A (len 242)		DaliLite result

site  1npp VQELEKKWYALQVEPGKENEAKENLLKVLELEGLKDLVDEVIVPAEEKVVIRAQGKEKYRLSLKGNARDISVLG KKGVTTFRIENGEVKV code --G000000000000QBQAAAAAAAAAAAAABR1QABGO0000RG00000000RRG0R0000RG0000000000 R000000000RRG000 LCS     000000000000QBQAAAAAAAAAAAAABR QABG 0000RG00000000RRG0 0000RG0000000000 R00000000 RRG000 code  --000000000000QBQAAAAAAAAAAAAABRRQABGR0000RG00000000RRG000000RG0000000000QR00000000 RRG000 1npr  QELEKKWYALQVEPGKENEAKENLLKVLELEGLKDLVDEVIVPAEEKVVIRAQGKEKYRLSLKGNARDISVLGKKGVTTFRIE NGEVKV site  site  1npp VESVEGDT C VNAPPISKPGQKITCKENKTEAKIVL DNKIFPG  YILIKAHMNDKLLMAIEKTPHVFRPVMVGGKPVPLKEEEVQNILNQIK code R0000BGR Q ABG000000RG0000QABR0000000 R00000R  G00000R00QAAAAAAABG0RG000000RRG00000QAAAAAAAAABR LCS  R0000  R Q ABG000000RG0000QABR0000000 R    0R  G00000 00QAAAAAAABG0RG000000RRG00000QAAAAAAAAAB code R0000  R0QQABG000000RG0000QABR00000001RR   0R1RG00000O00QAAAAAAABG0RG000000RRG00000QAAAAAAAAAB 1npr VESVE  GDTCVNAPPISKPGQKITCKENKTEAKIVLDNK   IFPGYILIKAHMNDKLLMAIEKTPHVFRPVMVGGKPVPLKEEEVQNILNQI site   site                                                ++++++++++ 1npp RGVKPSKV EFEKGDQVRVI EGPFMNFTGTVEEVHPE KRKLTVMISIFGRMTPVELDF   DQV code RR00R0R1 OG00RG00000 00QB0R00000R00010 RG00003000RR030000000   G-- LCS    00 0R  O 00R 00000 00QB0R00000R000   RG000   00RR  0000000   G code 000000R00O000R 00000R00QB0R00000R000QABRG000R  00RRRR0000000QABG0-- 1npr KRGVKPSKVEFEKG DQVRVIEGPFMNFTGTVEEVHPEKRKLTVM  ISIFGRMTPVELDFDQVEKI site                                                  ++++++++++ *RATIO :  lcs/trimmed_seq_a = 0.890 (=  210/  236), lcs/trimmed_seq_b = 0.882 (=  210/  238)

Structural alignment by ComSubstruct + manual inspection

DSSP lLLLLLEEEEEEELLLLHHHHHHHHHHHHHHLLLHHHEEEEELLLEEEEEEEELLEEEEEEELLLLLEEEEEELLLLEEEEEEELLEEEE 1npp vQELEKKWYALQVEPGKENEAKENLLKVLELEGLKDLVDEVIVPAEEKVVIRAQGKEKYRLSLKGNARDISVLGKKGVTTFRIENGEVKV       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1npr .QELEKKWYALQVEPGKENEAKENLLKVLELEGLKDLVDEVIVPAEEKVVIRAQGKEKYRLSLKGNARDISVLGKKGVTTFRIENGEVKV  DSSP .LLLLLEEEEEEELLLLHHHHHHHHHHHHHHLLLHHHEEEEELLLEEEEEEEELLEEEEEEELLLLLEEEEEELLLLEEEEEEELLEEEE DSSP EELLLLLLHHHLLLLLLLLLEEEELLLLEEEEEEEELLLLLLEEEEEELLLHHHHHHHHLLLLEEEELEELLEELEELHHHHHHHHHLLL 1npp VESVEGDTCVNAPPISKPGQKITCKENKTEAKIVLDNKIFPGYILIKAHMNDKLLMAIEKTPHVFRPVMVGGKPVPLKEEEVQNILNQIK      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1npr VESVEGDTCVNAPPISKPGQKITCKENKTEAKIVLDNKIFPGYILIKAHMNDKLLMAIEKTPHVFRPVMVGGKPVPLKEEEVQNILNQIK DSSP EELLLLLLHHHLLLLLLLLLEEEELLLLEEEEEEEELLLLLLEEEEEELLLHHHHHHHHHLLLEEEELLLLLLLLEELHHHHHHHHHHHL DSSP llllLLLLLLL.LLLEEELLLLLLLLLEEEEEELLLLLLLEEEEEEELLEEEEEEEL.LLLL.. 1npp rgvkPSKVEFE.KGDQVRVIEGPFMNFTGTVEEVHPEKRKLTVMISIFGRMTPVELD.FDQV..                  ||||||||||||||||||||||||||||||||||||||||||||| 1npr .rgvKPSKVEFeKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTVMISIFGRMTPVELDfDQVEki DSSP .lllLLLLLLLlLLLEEEELLLLLLLLEEEEEEEELLLLEEEEEEEELLEEEEEEEEhHHEEel *Z-score 25.3  AR 235  RMSD 16.7A  SI 95%

Structural alignment by DaliLite

				Z-Score: 24.2 AR: 215 RMSD: 4.3A SI: 84%
1m1g C (len 244)	1npr A (len 242)		DaliLite result

site  1m1g QVQELEKKWYALQVEPGKENEAKENLLKVLELEGLKDLVDEVIVPAEEKVVIRAQGKEKYRLSLKGNARDISVLGKKGVTTFRIENGEVK code --R1000000000000QGQAAAAAAAAAAAAABRRQABGR0000RG00000000RRG000000RG0000000000RR00000000ROG00 LCS      000000000000Q QAAAAAAAAAAAAABRRQABGR0000RG00000000RRG0R0000RG0000000000 R00000000R G00 code   --000000000000QBQAAAAAAAAAAAAABRRQABGR0000RG00000000RRG000000RG0000000000QR00000000RRG00 1npr   QELEKKWYALQVEPGKENEAKENLLKVLELEGLKDLVDEVIVPAEEKVVIRAQGKEKYRLSLKGNARDISVLGKKGVTTFRIENGEVK site  site  1m1g VVESVEGDTCVNAPPISKPGQKITCKENKTEAKIVLD NKIFP GYILIKAHMNDKLLMAIEKTPHVFRPVMVGGKPVPLKEEEVQNILNQI code 0R0001RGQAABG000001RG000OQABRG0000000 RQG00 RG00000R00QAAAAAAABG0RG000000RRG00000QAAAAAAAAHB LCS  0R000 R Q ABG00000 RG000 QABR 0000000 R  0  RG00000 00QAAAAAAABG0RG000000RRG00000QAAAAAAAA B code 0R0000R0QQABG000000RG0000QABR 00000001RR 0R1RG00000O00QAAAAAAABG0RG000000RRG00000QAAAAAAAAAB 1npr VVESVEGDTCVNAPPISKPGQKITCKENK TEAKIVLDNK IFPGYILIKAHMNDKLLMAIEKTPHVFRPVMVGGKPVPLKEEEVQNILNQI site   site                                                  ++++++++++ 1m1g KRGVKPSKV EF EK GDQVRVIEGPFMNFTGTVEEVHPE KRKLTVMISIFGRMTPVELDFDQVEKI code GR0000R00 00 00 R00000R00QB0R0000000000Q BRG0000000RRG3000000QABG0-- LCS    0000 00 00 00 R00000R00QB0R00000 000 Q BRG000 00 RR  000000QABG0 code   0000 00R00O000R00000R00QB0R00000R000 QABRG000R00RRRR0000000QABG0-- 1npr   KRGV KPSKVEFEKGDQVRVIEGPFMNFTGTVEEVH PEKRKLTVMISIFGRMTPVELDFDQVEKI site                                                   ++++++++++ *RATIO :  lcs/trimmed_seq_a = 0.896 (=  215/  240), lcs/trimmed_seq_b = 0.903 (=  215/  238)

Structural alignment by ComSubstruct + manual inspection

DSSP llLLLLLEEEEEEELLLLHHHHHHHHHHHHHHHLLHHHEEEEELLLEEEEEEEELLLEEEEEELLLLLEEEEEELLLLEEEEEELLLLEE 1m1g qvQELEKKWYALQVEPGKENEAKENLLKVLELEGLKDLVDEVIVPAEEKVVIRAQGKEKYRLSLKGNARDISVLGKKGVTTFRIENGEVK        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1npr ..QELEKKWYALQVEPGKENEAKENLLKVLELEGLKDLVDEVIVPAEEKVVIRAQGKEKYRLSLKGNARDISVLGKKGVTTFRIENGEVK  DSSP ..LLLLLEEEEEEELLLLHHHHHHHHHHHHHHLLLHHHEEEEELLLEEEEEEEELLEEEEEEELLLLLEEEEEELLLLEEEEEEELLEEE DSSP EEELLLLLLHHHLLLLLLLLLEEEELLLLEEEEEEEELLLLLLEEEEEELLLHHHHHHHHLLLLEEEELEELLEELLLLHHHHHHHHHHH 1m1g VVESVEGDTCVNAPPISKPGQKITCKENKTEAKIVLDNKIFPGYILIKAHMNDKLLMAIEKTPHVFRPVMVGGKPVPLKEEEVQNILNQI      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1npr VVESVEGDTCVNAPPISKPGQKITCKENKTEAKIVLDNKIFPGYILIKAHMNDKLLMAIEKTPHVFRPVMVGGKPVPLKEEEVQNILNQI DSSP EEELLLLLLHHHLLLLLLLLLEEEELLLLEEEEEEEELLLLLLEEEEEELLLHHHHHHHHHLLLEEEELLLLLLLLEELHHHHHHHHHHH DSSP LlLLLLlLLLLLllLEEE......elllllLLLEEEEEEEelllleEEEE.....eeeLLEEEEEEEehhheeel 1m1g KrGVKPsKVEFEkgDQVR......viegpfMNFTGTVEEVhpekrkLTVM.....isiFGRMTPVELdfdqveki      |          |                        | 1npr K.RGVK.PSKVE.fEKGDqvrviegpfmnfTGTVEEVHPE.....kRKLTvmisifgrMTPVELDFD...qveki DSSP L.LLLL.LLLLL.lLLLLeeeellllllllEEEEEEEELL.....lLEEEeeeeelleEEEEEEEHH...heeel *Z-score 24.2  AR 215  RMSD 4.3A  SI 84%

Structural alignment by DaliLite

[The DSSP code]

• H = alpha helix
• B = residue in isolated beta-bridge
• E = extended strand, participates in beta ladder
• G = 3-helix (3/10 helix)
• I = 5 helix (pi helix)
• T = hydrogen bonded turn
• S = bend
• L = no assigned structure

[The 5-tile code]

• 0 = DDDDD    (extended strand, small blue spheres)
• 1 = DDDDU
• 2 = DDDUD
• 3 = DDDUU
• 8 = DUDDD
• 9 = DUDDU
• A = DUDUD    (helix, large red spheres)
• B = DUDUU    (turn, large yellow spheres)
• G = UDDDD
• H = UDDDU
• I = UDDUD
• J = UDDUU
• O = UUDDD
• P = UUDDU
• Q = UUDUD    (turn, large yellow spheres)
• R = UUDUU    (turn, large yellow spheres)