[From cluster 37 to cluster 40]


(1) Cluster 37

(1-1)
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   Z-Score: 17.0
AR: 116
RMSD: 8.9A
SI: 100%
1m46 A (len 148) 1n2d A (len 147)
DaliLite result

site              ************
1m46 SATRANKDIFTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLDQITGLIEVNEKELDATTKAKTEDFVKAFQ
code --QAAAAAAAAAABQBRRRG00QABQAAAAAAB00000QAAAAAAAABGQABRB0R000QAAAAAAAAABQAAAAAAB000QAAHQAAIA

LCS     AAAAAAAAAABQBRRRG00QABQAAAAAAB00000QAAAAAAAABGQA  B R000QAAAAAAAAABQAAAAAAB 00QAA QAA A
code  --AAAAAAAAAABQBRRRG00QABQAAAAAAB00000QAAAAAAAABGQAAABGR000QAAAAAAAAABQAAAAAABG00QAA1QAAAA
1n2d  ATRANKDIFTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLDQITGLIEVNEKELDATTKAKTEDFVKAFQ
site              ************

site   ************               ************
1m46 VFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGEIDYKKFIEDVLRQ
code AABQBRRRG00QAAAAAAAA000R000QAAAAAAAABG000QBR00RQAAAAAAAB--

LCS  AA QBRRRG00QAAAAAAA 000R000QAAAAAAAABG000QBR00RQAAAAAAAB
code AAGQBRRRG00QAAAAAAA0000R000QAAAAAAAABG000QBR00RQAAAAAAAB--
1n2d VFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGEIDYKKFIEDVLRQ
site   ************               ************


*RATIO :  lcs/trimmed_seq_a = 0.938 (=  135/  144), lcs/trimmed_seq_b = 0.944 (=  135/  143)
Structural alignment by ComSubstruct + manual inspection
DSSP lLHHHHHHHHHHHLLLLLLEEEHHHHHHHHHHLLLLLLHHHHHHHHHLLHHHHLLLEEEHHHHHHHHHHLHHHHHHLLLLLHHHHHHHHH
1m46 sATRANKDIFTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLDQITGLIEVNEKELDATTKAKTEDFVKAFQ
      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1n2d .ATRANKDIFTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLDQITGLIEVNEKELDATTKAKTEDFVKAFQ
DSSP .LHHHHHHHHHHHLLLLLLEEEHHHHHHHHHHLLLLLLHHHHHHHHHHLHHHHHLLEEEHHHHHHHHHHLHHHHHHHHLLLLHHHHHHHH


DSSP LLLLLLLLEEEHHhhhhhhhhllllllhhhhhhhhllllLLLLLEEEHHHHHHhhhll
1m46 VFDKESTGKVSVGdlrymltglgekltdaevdellkgveVDSNGEIDYKKFIEdvlrq
     |||||||||||||                          ||||||||||||||
1n2d VFDKESTGKVSVGdlrymltglgekltdaevdellkgveVDSNGEIDYKKFIEdvlrq
DSSP LLLLLLLLEEEHHhhhhhhhhllllllhhhhhhhhhlllLLLLLEEEHHHHHHhhhll


*Z-score 17.0  AR 116  RMSD 8.9A  SI 100%
Structural alignment by DaliLite

(1-2)
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   Z-Score: 15.4
AR: 118
RMSD: 10.1A
SI: 100%
1m46 A (len 148) 1n2d B (len 145)
DaliLite result

site               ************
1m46  SATRANKDIFTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLDQITGLIEVNEKELDAT TKAKTEDFVKAFQ
code  --QAAAAAAAAAABQBRRRG00QABQAAAAAAB00000QAAAAAAAABGQABRB0R000QAAAAAAAAABQAAAAAA B000QAAHQAAIA
LCS     Q    AAAAAABQBRRRG00QABQAAAAAAB00000QAAAAAAAABGQABRB0R000QAAAAAAAAABQAAAAAA B 0 QAA  AA A
code --0Q    AAAAAABQBRRRG00QABQAAAAAAB00000QAAAAAAAABGQABRB0R000QAAAAAAAAABQAAAAAAHBG0 QAA  AA A
1n2d RANK    DIFTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLDQITGLIEVNEKELDATTKAK TED  FV K
site               ************

site     * ***********               ********* ***
1m46 VF  D KESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKGV EVD SNGEIDYKKFIEDVLRQ
code AA  B QBRRRG00QAAAAAAAA000R000QAAAAAAAABG 000 QBR00RQAAAAAAAB--
LCS  AA  B QBRRRG00QAAAAAA  000R000QAAAAAA  BG 000 QBR00RQAAAAAA B
code AAAABGQBRRRG00QAAAAAAB2000R000QAAAAAA  BGR0000QBR00RQAAAAAA B1--
1n2d AFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDEL  LKGVEVDSNGEIDYKKFIED VLRQ
site      ************               *****  *******


*RATIO :  lcs/trimmed_seq_a = 0.903 (=  130/  144), lcs/trimmed_seq_b = 0.922 (=  130/  141)
Structural alignment by ComSubstruct + manual inspection
DSSP llhhhHHHHHHHHLLLLLLEEEHHHHHHHHHHLLLLLLHHHHHHHHHLLHHHHLLLEEEHHHHHHHHHHLHHHHHHLLLLLHHHHHHHHH
1m46 satraNKDIFTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLDQITGLIEVNEKELDATTKAKTEDFVKAFQ
          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1n2d ...raNKDIFTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLDQITGLIEVNEKELDATTKAKTEDFVKAFQ 
DSSP ...llLHHHHHHHLLLLLLLEEHHHHHHHHHHLLLLLLHHHHHHHHHLLHHHLLLLEELHHHHHHHHHHLHHHHHHHHHLLHHHHHHHHH


DSSP LLLLLLLLEEEHHHhhhhhhhllllllhhhhhhhhLLLLLLLLLEEEHHHHHHHhhll
1m46 VFDKESTGKVSVGDlrymltglgekltdaevdellKGVEVDSNGEIDYKKFIEDvlrq
     ||||||||||||||                     |||||||||||||||||||
1n2d VFDKESTGKVSVGDlrymltglgekltdaevdellKGVEVDSNGEIDYKKFIEDvlrq
DSSP HHLLLLLLEEEHHHhhhhhhhllllllhhhhhhhlLLLLLLLLLEEEHHHHHHHhhll


*Z-score 15.4  AR 118  RMSD 10.1A  SI 100%
Structural alignment by DaliLite


(2) Cluster 38

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   Z-Score: 28.6
AR: 186
RMSD: 1.2A
SI: 100%
1m7g C (len 209) 1m7h C (len 204)
DaliLite result

site                                 ********
1m7g STNITFHASA LT RSERTELRNQ RGLTIWLTGLSASGKSTLAVELEHQLVRDR RVHAYRLDGDNIRFGLNKDLGFSEADRNENIRRIAEVA
code --000QABGR 00 QAAAAAAABR 00000000000RR0QAAAAAAAAAAAAB00 R0000000QAB1QB0QBQBG000QAAAAAAAAAAAAAA

LCS    0      R 00 QAAAAAA BR 00000000000RR0QAAAAAAAAAAAA 00 R0000000QAB1QB0QBQBG0 0QAAAAAAAAAAAAAA
code --0      RG000QAAAAAA BRG00000000000RR0QAAAAAAAAAAAA 00BR0000000QAB1QB0QBQBG0R0QAAAAAAAAAAAAAA
1m7h TFH      ASALTRSERTEL RNQRGLTIWLTGLSASGKSTLAVELEHQLV RDRRVHAYRLDGDNIRFGLNKDLGFSEADRNENIRRIAEVA
site                                 ********

site                *
1m7g KLFADSNSIAITSFISPYRKDRDTARQLHEVATPG EETGLPFVEVYVDVPVEVAEQRDPKGLYKKAREGVIKEFTGISAPYEAPANPEVH
code AAAAABR0000000RRRGQAAAAAAAAAABGR00R GR000000000R000QAAAAABGQBRQAAAAABRRG0R00QG0000000R00R00

LCS  AAAAABR0000000RRRGQAAAAAAAAAABG 00  GR 00000000R000QAAAAAB QBRQAAAAABRRG0R00 G 000000R00R00
code AAAAABR0000000RRRGQAAAAAAAAAABG 0030GRG00000000R000QAAAAABRQBRQAAAAABRRG0R00RGR000000R00R00
1m7h KLFADSNSIAITSFISPYRKDRDTARQLHEV ATPGEETGLPFVEVYVDVPVEVAEQRDPKGLYKKAREGVIKEFTGISAPYEAPANPEVH
site                *

site 
1m7g VKNYELPVQDAVKQIIDYLDTKGYLPAKK
code 0R0GRG0QAAAAAAAAAAAAABRRG00--

LCS  0R GRG0QAAAAAAAAAAAAABRRG0
code 0RRGRG0QAAAAAAAAAAAAABRRG0--
1m7h VKNYELPVQDAVKQIIDYLDTKGYLPAK
site 


*RATIO :  lcs/trimmed_seq_a = 0.917 (=  188/  205), lcs/trimmed_seq_b = 0.940 (=  188/  200)
Structural alignment by ComSubstruct + manual inspection
DSSP llllllllllllhhhhhhhhllLLEEEEEELLLLLLHHHHHHHHHHHHHHHHLLLEEEELHHHHLLLLLLLLLLLHHHHHHHHHHHHHHH
1m7g stnitfhasaltrsertelrnqRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFSEADRNENIRRIAEVA
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1m7h ....tfhasaltrsertelrnqRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFSEADRNENIRRIAEVA
DSSP ....llllllllhhhhhhhhllLLEEEEEELLLLLLHHHHHHHHHHHHHLLLLLLEEEEEHHHHLLLLLLLLLLLHHHHHHHHHHHHHHH


DSSP HHHHHLLLEEEEELLLLLHHHHHHHHHHHHLLLLLLLLLLLEEEEEEELLHHHHHLLLLLLHHHHHHLLLLLLLLLLLLLLLLLLLLLEE
1m7g KLFADSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDPKGLYKKAREGVIKEFTGISAPYEAPANPEVH
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1m7h KLFADSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDPKGLYKKAREGVIKEFTGISAPYEAPANPEVH
DSSP HHHHHLLLEEEEELLLLLHHHHHHHHHHHHLLLLLLLLLLLEEEEEEELLHHHHHHHLLLLHHHHHHHLLLLLLLLLLLLLLLLLLLLEE


DSSP EELLLLLHHHHHHHHHHHHHHLLLLLLLl
1m7g VKNYELPVQDAVKQIIDYLDTKGYLPAKk
     ||||||||||||||||||||||||||||
1m7h VKNYELPVQDAVKQIIDYLDTKGYLPAK.
DSSP EELLLLLHHHHHHHHHHHHHHLLLLLLL.


*Z-score 28.6  AR 186  RMSD 1.2A  SI 100%
Structural alignment by DaliLite


(3) Cluster 39

(3-1)
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   Z-Score: 4.8
AR: 60
RMSD: 2.2A
SI: 95%
1mi7 R (len 103) 1p6z R (len 102)
DaliLite result

site 
1mi7   QQSPYSAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEEVLL
code   --0QIAAAAAAAAAAAAAAAAAAAAAAAAGRRQAAAAAAB00QAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABG0QAAAAAAAAA--

LCS      0Q   AAAAAAAAAAAAAAAAAAAAAA RRQAAAAAAB 0QAAAAAAAAAAAAAAAAA      AAAA       AAAAAAAAAAABG0QAAAAAAAAA
code --R00Q   AAAAAAAAAAAAAAAAAAAAAABRRQAAAAAABG0QAAAAAAAAAAAAAAAAABRGG0QAAAAB0RR00QAAAAAAAAAAABG0QAAAAAAAAA--
1p6z QSPYSA   AMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEEVLL
site


*RATIO :  lcs/trimmed_seq_a = 0.818 (=   81/   99), lcs/trimmed_seq_b = 0.827 (=   81/   98)
Structural alignment by ComSubstruct + manual inspection
DSSP LLLHhHHHHHHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHLLHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhhhhllhhhhhhhhhhhl
1mi7 QQSPySAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRgemsqrelknelgagiatitrgsnslkaapvelrqwleevll
     |    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1p6z QSPY.SAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRgemsqrelknelgagiatitrgsnslkaapvelrqwleevll
DSSP LLLL.LHHHHHHHHHHHHHHHHHHHHHHHHLLHHHHHHHHLLHHHHHHHHHHHHHHHHHHHllllhhhhhhhhlllhhhhhhhhhhhhhllhhhhhhhhhhhl


*Z-score 4.8  AR 60  RMSD 2.2A  SI 95%
Structural alignment by DaliLite

(3-2)
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   Z-Score: 4.6
AR: 61
RMSD: 2.7A
SI: 95%
1mi7 R (len 103) 1wrp R (len 102)
DaliLite result

site    
1mi7    QQSPYSAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEEVLL
code    --0QIAAAAAAAAAAAAAAAAAAAAAAAAGRRQAAAAAAB00QAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABG0QAAAAAAAAA--

LCS       0Q AAAAAAAAAAAAAAAAAAAAA    RRQAAAAAAB 0QAAAAAAAAAAAAAAAAA      AAAAA      AAAAAA AAAABG0QAAAAAAA
code --RG00Q AAAAAAAAAAAAAAAAAAAAAB   RRQAAAAAABG0QAAAAAAAAAAAAAAAAABRGG0QAAAAA0RR00QAAAAAAHAAAABG0QAAAAAAAB0--
1wrp QSPYSAA MAEQRHQEWLRFVDLLKNAYQN   DLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEEVLL
site


*RATIO :  lcs/trimmed_seq_a = 0.788 (=   78/   99), lcs/trimmed_seq_b = 0.796 (=   78/   98)
Structural alignment by ComSubstruct + manual inspection
DSSP lllhHHHHHHHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHLLHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhllhhhhhhhhhhhl
1mi7 qqspYSAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSqrelknelgagiatitrgsnslkaapvelrqwleevll
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1wrp .qspYSAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSqrelknelgagiatitrgsnslkaapvelrqwleevll
DSSP .lllLLLLHHHHHHHHHHHHHHHHHHHHHLLLHHHHHHHHLLHHHHHHHHHHHHHHHHHHHLLLLhhhhhhhhlllhhhhhhhhhhhhlllhhhhhhhhhhll


*Z-score 4.6  AR 61  RMSD 2.7A  SI 100%
Structural alignment by DaliLite

(3-3)
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   Z-Score: 3.2
AR: 60
RMSD: 3.5A
SI: 60%
1mi7 R (len 103) 2oz9 R (len 104)
DaliLite result

site 
1mi7  QQSPYSAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEEVLL
code  --0QIAAAAAAAAAAAAAAAAAAAAAAAAGRRQAAAAAAB00QAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABG0QAAAAAAAAA--

LCS     0Q AAAAAAAAAAAAAAAAAAAAAA   RRQAAAAAA 00QAAAAAAAAAAAAAAAAA      AAAAA      AAAAAAAAAAABG0QAAAAAAAA
code --00Q AAAAAAAAAAAAAAAAAAAAAAB  RRQAAAAAAG00QAAAAAAAAAAAAAAAAABRRG0QAAAAAG0R00QAAAAAAAAAAABG0QAAAAAAAA0BG0--
2oz9 SPYSA AMAEQRHQEWLRFVDLLKNAYQN  DLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEEVLLKSD
site


*RATIO :  lcs/trimmed_seq_a = 0.818 (=   81/   99), lcs/trimmed_seq_b = 0.810 (=   81/  100)
Structural alignment by ComSubstruct + manual inspection
DSSP lLLHHhHHHHHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHL...LHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhhhllhhhhhhhhhhhl
1mi7 qQSPYsAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLML...TPDEREALGTRVRIVEELLRGemsqrelknelgagiatitrgsnslkaapvelrqwleevll
           |||||||||||||||||||||||||||||||||||              |
2oz9 .SPYS.AAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLtpdEREALGTRVRIVEELLRGEMSqrelknelgagiatitrgsnslkaapvelrqwleevllksd
DSSP .LLLL.HHHHHHHHHHHHHHHHHHHHHHHLLLHHHHHHHHLlhhHHHHHHHHHHHHHHHHHLLLLhhhhhhhhlllhhhhhhhhhhhhhllhhhhhhhhhhhllll


*Z-score 3.2  AR 60  RMSD 3.5A  SI 60%
Structural alignment by DaliLite

(3-4)
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   Z-Score: 4.5
AR: 60
RMSD: 2.7A
SI: 100%
1mi7 R (len 103) 3wrp (len 101)
DaliLite result

site 
1mi7 QQSPYSAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEEVLL
code --0QIAAAAAAAAAAAAAAAAAAAAAAAAGRRQAAAAAAB00QAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABG0QAAAAAAAAA--

LCS       A  AAAAAAAAAAAAAAAAAAA   RRQAAAAAA 00QAAAAAAAAAAAAAAAAA      AAAAAA     AAAAAAAAAAABG0QAAAAAAA
code    --ABQAAAAAAAAAAAAAAAAAAAB  RRQAAAAAA000QAAAAAAAAAAAAAAAAABRRG0QAAAAAABR00QAAAAAAAAAAABG0QAAAAAAAB0B1B--
3wrp    SAAMAEQRHQEWLRFVDLLKNAYQN  DLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEEVLLKSD
site


*RATIO :  lcs/trimmed_seq_a = 0.778 (=   77/   99), lcs/trimmed_seq_b = 0.794 (=   77/   97)
Structural alignment by ComSubstruct + manual inspection
DSSP lllhhHHHHHHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHLLHHHHHHHHHHHHHHHHHHHHHHH...hhhhhhhhhhhhhhhhhhhhhhhhllhhhhhhhhhhhl
1mi7 qqspySAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMS...qrelknelgagiatitrgsnslkaapvelrqwleevll
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3wrp .....SAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSqrelknelgagiatitrgsnslkaapvelrqwleevllksd
DSSP .....LLLLHHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHLLHHHHHHHHHHHHHHHHHHHLLLLhhhhhhhhlllhhhhhhhhhhhhlllhhhhhhhhhhhllll


*Z-score 4.5  AR 60  RMSD 2.7A  SI 100%
Structural alignment by DaliLite


(4) Cluster 40

jpg image jpg image
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   Z-Score: 33.1
AR: 178
RMSD: 10.3A
SI: 100%
1mkm A (len 246) 1mkm B (len 247)
DaliLite result

site 
1mkA  MNTLKKAFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRKKDKRYVPGYKLIEYGSFVLRRFNI RDIAHDHLVDIMK
code  --QAAAAAAAAAAAABGR0000QAAAAAAB000QAAAAAAAAAAAABRRG000QBR00000QAAAAAAAAAAAB00Q AAB1QAAAAAAAA

LCS     QAAAAAAAAAAAABG 0000QAAAAAAB  0QAAAAAAAAAAAABRR 000QBR00000QAAAAAAAAAAAB  Q AAB1QAAAAAAAA
code --BQAAAAAAAAAAAABG00000QAAAAAABRG0QAAAAAAAAAAAABRR0000QBR00000QAAAAAAAAAAABG QAAAB1QAAAAAAAA
1mkB HMNTLKKAFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRKKDKRYVPGYKLIEYGSFVLRRF NIRDIAHDHLVDIMK
site

site 
1mkA RTGETVHLILKDGFEGVYIDKVEGEQSIPMVS  RLGMKVDLYSTASGKSILAFVPEKELKEYLKIVELKP KTPNTITNPRVLKRELEKIRK
code B0RG000000000RG003R00000QBG000RG  00R0000QABGQAAAAAAA000QAAAAAAAB000R0R R0QB00RGQAAAAAAAAAAAA

LCS  B0RG000000000RG00 R00000   000RG  00R0000   GQAAAAAA 000QAAAAAAAB000 0R R0QB00RGQAAAAAAAAAAAA
code B0RG000000000RG000R00000R  000RG0000R0000RHRGQAAAAAAB000QAAAAAAAB000 0R0R0QB00RGQAAAAAAAAAAAA
1mkB RTGETVHLILKDGFEGVYIDKVEGE  QSIPMVSRLGMKVDLYSTASGKSILAFVPEKELKEYLKIVE LKPKTPNTITNPRVLKRELEKIRK
site

site 
1mkA RGYAVDNEENEIGIMCVGVPIFDHNGYPVAGVSISGVARKFTEEKIEEYSDVLKEKAEEISRKLGY
code BR0000RRQB00RG000000000QBR0RR00000000QABG0QAAAAAAAAAAAAAAAAAAAAB--

LCS  BR 000RR  00RG000000000QBR0RR00000000QABG0QAAAAAAAAAAAAAAAAAAAAB
code BRG000RRR000RG000000000QBR0RR00000000QABG0QAAAAAAAAAAAAAAAAAAAAB--
1mkB RGYAVDNEENEIGIMCVGVPIFDHNGYPVAGVSISGVARKFTEEKIEEYSDVLKEKAEEISRKLGY
site


*RATIO :  lcs/trimmed_seq_a = 0.926 (=  224/  242), lcs/trimmed_seq_b = 0.922 (=  224/  243)
Structural alignment by ComSubstruct + manual inspection
DSSP .lllhhhhhhhhhhhhhllllllhhhhhhhlllLHHHhhhhhhhhhhllleeellllleeellhhhhhhhhhhHHLLHHHHHHHHHHHHHH
1mkA .mntlkkafeildfivknpgdvsvseiaekfnmSVSNaykymvvleekgfvlrkkdkryvpgyklieygsfvlRRFNIRDIAHDHLVDIMK
                                      ||||                                    ||||||||||||||||||
1mkB hmntlkkafeildfivknpgdvsvseiaekfnmSVSNaykymvvleekgfvlrkkdkryvpgyklieygsfvlRRFNIRDIAHDHLVDIMK
DSSP lllhhhhhhhhhhhhhhllllllhhhhhhhlllLHHHhhhhhhhhhhhlleeellllleeellhhhhhhhhhhLLLHHHHHHHHHHHHHHH


DSSP LLLLLEEEEEELLLEEEEEEEELLLLLLLLLLLLLLEEELLLLHHHHHHHHHLLHHHHHHHHHHLLLLLLLLLLLLLHHHHHHHHHHHHH
1mkA RTGETVHLILKDGFEGVYIDKVEGEQSIPMVSRLGMKVDLYSTASGKSILAFVPEKELKEYLKIVELKPKTPNTITNPRVLKRELEKIRK
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1mkB RTGETVHLILKDGFEGVYIDKVEGEQSIPMVSRLGMKVDLYSTASGKSILAFVPEKELKEYLKIVELKPKTPNTITNPRVLKRELEKIRK
DSSP LLLLEEEEEEEELLEEEEEEEELLLLLLLLLLLLLLEEELLLLHHHHHHHLLLLHHHHHHHHHHLLLLLLLLLLLLLHHHHHHHHHHHHH


DSSP HLLEEEELLLLLLEEEEEEEEELLLLLEEEEEEEEEEHHHLLHHHHHHHHHHHHHHHHHHHHHLLL
1mkA RGYAVDNEENEIGIMCVGVPIFDHNGYPVAGVSISGVARKFTEEKIEEYSDVLKEKAEEISRKLGY
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1mkB RGYAVDNEENEIGIMCVGVPIFDHNGYPVAGVSISGVARKFTEEKIEEYSDVLKEKAEEISRKLGY
DSSP HLLEEEELLLLLLEEEEEEEEELLLLLEEEEEEEEEEHHHLLHHHHHHHHHHHHHHHHHHHHHLLL


*Z-score 33.1  AR 178  RMSD 10.3A  SI 100%
Structural alignment by DaliLite



[The DSSP code]

[The 5-tile code]