• Backbone structures are obtained using ProteinViewer, where N-terminal is colored red and C-terminal blue.
• Click the images to view larger image.
• Click PDB IDs to view the corresponding PDB file
• See the bottom for brief explanation of the DSSP codes and the 5-tile codes. 
• The "site" row indicates active site residues:
          "*" denotes active sites registered in SwissProt/UniProt.
          "+" denotes active sites registered in PROSITE/UniProt.
           Residues registered in both of them are denoted by "*."
• In the images of superimposition, the C-terminal of the first sequence is connected with the N-terminal of the second sequecne
  (because of the DaliLite output format).
  

(1) Cluster 51

				Z-Score: 43.6 AR: 345 RMSD: 7.1A SI: 100%
1usg A (len 345)	1usi A (len 345)		DaliLite result

site  1usg DDIKVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGIKGDKLVGVEYDDACDPKQAVAVANKIVNDGIKYVIGHLCSSSTQPASDIYE code --00000000R00QBQAAAAAAAAAAAAAAAAAAAB00ORR000000000RRR0QAAAAAAAAAAAABR00G0R0O00QAHAAAAAAAAA LCS    00000000R00QBQAAAAAAAAAAAAAAAAAAAB00 RR000000000RRR0QAAAAAAAAAAAABR0 G0R0O00QA AAAAAAAAA code --00000000R00QBQAAAAAAAAAAAAAAAAAAAB00RRR000000000RRR0QAAAAAAAAAAAABR0OG0R0O00QAAAAAAAAAAA 1usi DDIKVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGIKGDKLVGVEYDDACDPKQAVAVANKIVNDGIKYVIGHLCSSSTQPASDIYE site  site  1usg DEGILMISPGATNPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDKQQYGEGLARSVQDGLKAANANVVFFDGITAGEK code ABR00000RG000QAAAABR0QBG00RG00QAAAAAAAAAAAA31RR00000000RR0QAAAAAAAAAAAAAAABR00RR0000001R0R LCS  ABR00000R 000QAAAABR0 BG00RG00QAAAAAAAAAAAA  RR00000000RR QAAAAAAAAAAAAAAABR00RR0000001R0R code ABR00000R0000QAAAABR01BG00RG00QAAAAAAAAAAAA00RR00000000RRGQAAAAAAAAAAAAAAABR00RR0000001R0R 1usi DEGILMISPGATNPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDKQQYGEGLARSVQDGLKAANANVVFFDGITAGEK site  site  1usg DFSALIARLKKENIDFVYYGGYYPEMGQMLRQARSVGLKTQFMGPEGVGNASLSNIAGDAAEGMLVTMPKRYDQDPANQGIVDALKADKK code GRQAAAAAAAABR0R0000000PAAAAAAAAAAAABR0R000000QABG0QAAAAA00QABGR0000000RQABGQABQAAAAAAAABR0 LCS  GRQAAAAAAAABR0R0000000PAAAAAAAAAAAABR0R000000QAB 0QAAAAA 0QABGR0000000RQABGQABQAAAAAAAABR0 code GRQAAAAAAAABR0R0000000PAAAAAAAAAAAABR0R000000QABR0QAAAAAB0QABGR0000000RQABGQABQAAAAAAAABR0 1usi DFSALIARLKKENIDFVYYGGYYPEMGQMLRQARSVGLKTQFMGPEGVGNASLSNIAGDAAEGMLVTMPKRYDQDPANQGIVDALKADKK site  site  1usg DPSGPYVWITYAAVQSLATALERTGSDEPLALVKDLKANGANTVIGPLNWDEKGDLKGFDFGVFQWHADGSSTKA code 0QBGQAAAAAAAAAAAAAAAAAA0RGRGQAAAAAAAAG00000QB000000QBR000R000000000QBR000-- LCS  0  GQAAAAAAAAAAAAAAAAAA RGRGQAAAAAAAA 00000QB000000QBR000R000000000QBR000 code 0RGGQAAAAAAAAAAAAAAAAAABRGRGQAAAAAAAAJ00000QB000000QBR000R000000000QBR000-- 1usi DPSGPYVWITYAAVQSLATALERTGSDEPLALVKDLKANGANTVIGPLNWDEKGDLKGFDFGVFQWHADGSSTKA site  *RATIO :  lcs/trimmed_seq_a = 0.959 (=  327/  341), lcs/trimmed_seq_b = 0.959 (=  327/  341)

Structural alignment by ComSubstruct + manual inspection

DSSP LLEEEEEEELLLLLLHHHHHHHHHHHHHHHHHHHHLLLLLLLLEEEEEEELLLLHHHHHHHHHHHHHLLLLEEELLLLHHHHHHHHHHHH 1usg DDIKVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGIKGDKLVGVEYDDACDPKQAVAVANKIVNDGIKYVIGHLCSSSTQPASDIYE      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1usi DDIKVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGIKGDKLVGVEYDDACDPKQAVAVANKIVNDGIKYVIGHLCSSSTQPASDIYE  DSSP LLEEEEEEELLLLLLHHHHHHHHHHHHHHHHHHHHLLLLLLLLEEEEEEELLLLHHHHHHHHHHHHHLLLLEEELLLLHHHHHHHHHHHH DSSP HHLLEEEELLLLLHHHHLLLLLLEEELLLLHHHHHHHHHHHHHHLLLLLLEEEEELLLHHHHHHHHHHHHHHHHLLLLEEEEEELLLLLL 1usg DEGILMISPGATNPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDKQQYGEGLARSVQDGLKAANANVVFFDGITAGEK      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1usi DEGILMISPGATNPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDKQQYGEGLARSVQDGLKAANANVVFFDGITAGEK DSSP HHLLEEEELLLLLHHHHLLLLLLEEELLLLHHHHHHHHHHHHHHLLLLLLEEEEELLLHHHHHHHHHHHHHHHHLLLLEEEEEELLLLLL DSSP LLHHHHHHHHHLLLLEEEEELLHHHHHHHHHHHHHLLLLLEEEELHHHLLLLHHHHHHHHHLLLEEEELLLHHHLHHHHHHHHHHHHLLL 1usg DFSALIARLKKENIDFVYYGGYYPEMGQMLRQARSVGLKTQFMGPEGVGNASLSNIAGDAAEGMLVTMPKRYDQDPANQGIVDALKADKK      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1usi DFSALIARLKKENIDFVYYGGYYPEMGQMLRQARSVGLKTQFMGPEGVGNASLSNIAGDAAEGMLVTMPKRYDQDPANQGIVDALKADKK DSSP LLHHHHHHHHHLLLLEEEEELLHHHHHHHHHHHHHLLLLLEEEELHHHLLHHHHHHHHHHHLLLEEEELLLHHHLHHHHHHHHHHHHLLL DSSP LLLLHHHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHLEEELLEEELLLLLLLLLLLLLEEEEELLLLLEEEL 1usg DPSGPYVWITYAAVQSLATALERTGSDEPLALVKDLKANGANTVIGPLNWDEKGDLKGFDFGVFQWHADGSSTKA      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1usi DPSGPYVWITYAAVQSLATALERTGSDEPLALVKDLKANGANTVIGPLNWDEKGDLKGFDFGVFQWHADGSSTKA DSSP LLLLHHHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHLEEELLEEELLLLLLLLLLLLLEEEEELLLLLEEEL *Z-score 43.6  AR 345  RMSD 7.1A  SI 100%

Structural alignment by DaliLite

(2) Cluster 52

				Z-Score: 13.2 AR: 91 RMSD: 3.4A SI: 90%
1vr4 A (len 103)	1vr4 D (len 103)		DaliLite result

site  1vrA MIVTTTSGIQGKEIIE YIDIVNGEAIMGANIVRDLFASVRDVVGGRAGS YES   K   LKEARDIAMDEMKELAKQKGANAIVGVDVDYEVVRDGMLMVAVSGTAVRI code --00RGR000RG00R0 000000000000QAAAAABRQBRG0000QB0RG R00   Q   AQAAAAAAAAAAAAAAAABR0R000R000000000R000000000000-- LCS    00RGR000RG00R0 000000000000       R  RG000 Q 0 G R00   Q   A AAAAAAAAAAAAAAAABR0R000R000000000R 00000000000 code --00RGR000RG00R0R0000000000000      R00RG000 QG0 G0R00000QAAAAAAAAAAAAAAAAAAAAABR0R000R000000000RR00000000000-- 1vrD MIVTTTSGIQGKEIIEYIDIVNGEAIMGAN      IVRDLFAS VRD VVGGRAGSYESKLKEARDIAMDEMKELAKQKGANAIVGVDVDYEVVRDGMLMVAVSGTAVRI site *RATIO :  lcs/trimmed_seq_a = 0.859 (=   85/   99), lcs/trimmed_seq_b = 0.859 (=   85/   99)

Structural alignment by ComSubstruct + manual inspection

DSSP LEELLLLLLLLLLLLEEEEEEEEEEEELhhhHHLLLH......hhlllLLLLllllLLLLHHHHHHHHHHHHHHHHHLLLLEEEEEEEEEEEEHHHEEEEEEEEEEEEL 1vrA MIVTTTSGIQGKEIIEYIDIVNGEAIMGaniVRDLFA......svrdvVGGRagsyESKLKEARDIAMDEMKELAKQKGANAIVGVDVDYEVVRDGMLMVAVSGTAVRI      ||||||||||||||||||||||||||||                      |     ||||||||||||||||||||||||||||||||||||||||||||||||||||| 1vrD MIVTTTSGIQGKEIIEYIDIVNGEAIMG...ANIVRDlfasvrdvvggRAGS...yESKLKEARDIAMDEMKELAKQKGANAIVGVDVDYEVVRDGMLMVAVSGTAVRI DSSP LEELLLLLLLLLLLLEEEEEEEEEEELL...LEEELLeelllllllllLLLL...hHHHHHHHHHHHHHHHHHHHHHLLLLEEEEEEEEEEEEHHHEEEEEEEEEEEEL *Z-score 13.2  AR 91  RMSD 3.4A  SI 90%

Structural alignment by DaliLite

(3) Cluster 53

				Z-Score: 7.3 AR: 53 RMSD: 1.0A SI: 100%
1y50 A (len 87)	1y51 A (len 87)		DaliLite result

site    +++     +++ +++++                  ++++++++++++++ ++++++++++    ++++++ 1y50 AEKTFKVVSDSGIH ARPATILVQTASKWNSEIQLEYNGKTVNLKSIMGVMS LGIPKGATIKITAEGADAAEAMAALTDTLAKEGLAE code --0000000QB000 QAAAAAAAAAAABGRG000000RRG000QBGQAAAAA R0000R000000000QBQAAAAAAAAAAAAABRG-- LCS    00000 0QB000 Q AAAAAAAAAABGRG000000RRG000QBGQAAAAA R 000R000000000QBQAAAAAAAAAAAAABRG code --00000R0QB0000Q AAAAAAAAAABGRG000000RRG000QBGQAAAAABR 000R000000000QBQAAAAAAAAAAAAABRG-- 1y51 AEKTFKVVSDSGIHAR PATILVQTASKWNSEIQLEYNGKTVNLKSIMGVMSLG IPKGATIKITAEGADAAEAMAALTDTLAKEGLAE site    +++     +++++ +++                  ++++++++++++++++ ++++++++    ++++++ *RATIO :  lcs/trimmed_seq_a = 0.964 (=   80/   83), lcs/trimmed_seq_b = 0.964 (=   80/   83)

Structural alignment by ComSubstruct + manual inspection

DSSP LLLLLLLLLLLLLLHHHHHHHHHHHHLLLLLLEEEELLEEEELLLHHHHLLLLlllllllllllllllhhhhhhhhhhhhhhlllll 1y50 AEKTFKVVSDSGIHARPATILVQTASKWNSEIQLEYNGKTVNLKSIMGVMSLGipkgatikitaegadaaeamaaltdtlakeglae      |||||||||||||||||||||||||||||||||||||||||||||||||||||  1y51 AEKTFKVVSDSGIHARPATILVQTASKWNSEIQLEYNGKTVNLKSIMGVMSLGipkgatikitaegadaaeamaaltdtlakeglae DSSP LEEEEELLLLLLLLHHHHHHHHHHHHLLLLEEEEEELLEEEELLLHHHHHHLLllllleeeeeeelllhhhhhhhhhhhhhhlllll *Z-score 7.3  AR 53  RMSD 1.0A  SI 100%

Structural alignment by DaliLite

(4) Cluster 54

				Z-Score: 34.9 AR: 335 RMSD: 13.3A SI: 97%
1ygy A (len 527)	1ygy B (len 527)		DaliLite result

site  1ygA SLPVVLIADKLAPSTVA ALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLV code --00000R0000QAAHQ BJ0QBG00000RQBGQAAAAA1AAB0R000001BG0R0QAAAAAGQB000000R00GRQBGRQAAAAABR000 LCS    00000 0000QAA   B 0 BG00000RQB QAAAAA AAB0R000001 G0R0QAAAA GQB0 0000R  GRQBGRQAAAAABR000 code --0000000000QAAAAAB 01BG00000RQBBQAAAAAAAAB0R000001RG0R0QAAAABGQB0R0000RGRGRQBGRQAAAAABR000 1ygB SLPVVLIADKLAPSTVAAL GDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLV site site                                                      ++++++++++++++++++++++++++++ 1ygA VNAPTSNI  HSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQ code 000OBQ1Q  AAAAAAAAAAAAAAABR1AAAAAAAABRG0RQABG0000RGR000000000QAAAAAAAAAAABR0000000QBG0QAAAAA LCS  00   Q1Q   AAAAAAAAAAAAAABR AAAAAAAABR 0RQABG0000R R000000000QAAAAAAAAAAABR0000000QBG0QAAAAA code 00R  Q1QGGQAAAAAAAAAAAAAABRQAAAAAAAABR00RQABG0000R0R000000000QAAAAAAAAAAABR0000000QBG0QAAAAA 1ygB VNA  PTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQ site                                                      ++++++++++++++++++++++++++++ site           ++++++++++++++++++++++   +      +++++++++++++++++ 1ygA LGIELLSLDDLLARADFISVHLPKTPETAGLI   DKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFEL code BR00000QAAAAB00R000000000QB00RQG   0QAAAABG00R00000RG000RG0QAAAAAAAABRR0R0000R00R01R0RG0QAABG LCS  BR00000QAAAA 00R0000000  Q 0 R G   0QAAAABG0 R00000RG000RG0QAAAAAAAABR  R0000R 0R01R0  0QAABG code BR00000QAAAAA00R0000000  QG01R G00R0QAAAABG01R00000RG000RG0QAAAAAAAABRGGR0000RG0R01R0000QAABG 1ygB LGIELLSLDDLLARADFISVHLP  KTPET AGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFEL site           +++++++++++++  +++++ +++++      +++++++++++++++++ site  1ygA AQVVVTPHLGASTAEAQDRAGTDVAESVRLALAGEFVPDAVNVGGGV VNEEVAPWLDLVRKLGVLAGVLSDELPVSLSVQVRGELAAEEV code QBG000OR1QBRGQAAAAAAAAAAAAAAAAAABR000QB0R0000RR 00QAAAAAAAAAAAAAAAAAABGR000R00000000QAABGR1 LCS  QBG000 R  BRGQAAAAAAAAAAAAAAAAAABR000QB0 000 R  00QA AAAAAAAAAAAAAA ABGR000R00000000QAABG code QBG000RRRRBRGQAAAAAAAAAAAAAAAAAABR000QB0O000 R0000QAHAAAAAAAAAAAAAAHABGR000R00000000QAABG3P 1ygB AQVVVTPHLGASTAEAQDRAGTDVAESVRLALAGEFVPDAVNVG GGVVNEEVAPWLDLVRKLGVLAGVLSDELPVSLSVQVRGELAAEEV site site  1ygA EVLRLSALRGLFSAVIEDAVTFVNA PALAA ERGVTAEICKASESPNHRSVVDVRAVGADGSVVTVSGTLYGPQLSQKIVQINGRHFDLRA code QAAAAAAAAAAHQABG01BGRG0RQ AAAAA B0O00000000RG0R00R000000000QBR00000000000QBR0000000RRG00000R LCS  QAAAAAAAAAAH AB 0     0   AAAAA B  00000000RG0R00R000000000QBR00000000000QBR0000000RRG00000R code QAAAAAAAAAAH AB00000000ABHAAAAAABR 00000000RG0R00R000000000QBR00000000000QBR0000000RRG00000R 1ygB EVLRLSALRGLF SAVIEDAVTFVNAPALAAERG VTAEICKASESPNHRSVVDVRAVGADGSVVTVSGTLYGPQLSQKIVQINGRHFDLRA site site  1ygA QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQDVPDDVRTAIAAAV DAYKLEVVDLS code G000000001G00RQAAAAAAAAAABR000R0000000R00RG0000000R0000QAAAAAAAAAB R0R000000-- LCS  G00000000  00R AAAAAAAAAABR000R0000000R0 RG0000000R0000QAAAAAAAA B R0R000000 code G000000000000RPAAAAAAAAAABR000R0000000R0GRG0000000R0000QAAAAAAAA B0R0R000000-- 1ygB QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQDVPDDVRTAIAA AVDAYKLEVVDLS site *RATIO :  lcs/trimmed_seq_a = 0.891 (=  466/  523), lcs/trimmed_seq_b = 0.891 (=  466/  523)

Structural alignment by ComSubstruct + manual inspection

DSSP LLLEEEELLLLLhHHHL.LLLLLLEEEELLLLLHHHHHHHHHHLLEEEELLLLLLLHHHHHLLLLLLEEEELLLLLLLLLHHHHHHLLLEE 1ygA SLPVVLIADKLApSTVA.ALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLV      ||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1ygB SLPVVLIADKLA.PSTVaALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLV DSSP LLLEEEELLLLL.HHHHhHHLLLLEEEELLLLLHHHHHHHHHHLLEEEELLLLLLLHHHHHLLLLLLEEEELLLLLLLLLHHHHHHLLLEE DSSP ELLLLLlhhhhhhhhhhhhhhhhllhhhhhhhhhlllllhhhllllllllleeeeelllhhhhhhhhhhhlllleeeeelllllhhhhhh 1ygA VNAPTSnihsaaehalalllaasrqipaadaslrehtwkrssfsgteifgktvgvvglgrigqlvaqriaafgayvvaydpyvsparaaq      |||||| 1ygB VNAPTSnihsaaehalalllaasrqipaadaslrehtwkrssfsgteifgktvgvvglgrigqlvaqriaafgayvvaydpyvsparaaq DSSP ELLLLLlhhhhhhhhhhhhhhhhllhhhhhhhhhlllllhhhllllllllleeeeelllhhhhhhhhhhhhllleeeeelllllhhhhhh DSSP hlleellhhhhhhhlleeeelllllllllllllhhhhlllllleeeeellllllllhhhhhhhhhllleeeeeelllllllllllhhhhl 1ygA lgiellslddllaradfisvhlpktpetaglidkealaktkpgviivnaargglvdeaaladaitgghvraagldvfatepctdsplfel       1ygB lgiellslddllaradfisvhlpktpetaglidkealaktkpgviivnaargglvdeaaladaitgghvraagldvfatepctdsplfel DSSP lleeellhhhhhhhlleeeelllllllllllllhhhhlllllleeeeellllllllhhhhhhhhhllleeeeeelllllllllllhhhhl DSSP lleeelllllllLHHHHHHHHHHHHHHHHHHHLLLLLLLLLLlLLLL.LLLLLLLHHHHHHHHHHHHHHLLLLLLLEEEEEEEEHHHHLLL 1ygA aqvvvtphlgasTAEAQDRAGTDVAESVRLALAGEFVPDAVNvGGGV.VNEEVAPWLDLVRKLGVLAGVLSDELPVSLSVQVRGELAAEEV                  ||||||||||||||||||||||||||||||  ||  ||||||||||||||||||||||||||||||||||||||||||| 1ygB aqvvvtphlgasTAEAQDRAGTDVAESVRLALAGEFVPDAVN.VGGGvVNEEVAPWLDLVRKLGVLAGVLSDELPVSLSVQVRGELAAEEV DSSP lleeelllllllLHHHHHHHHHHHHHHHHHHHLLLLLLLLLL.LLLLlLLLLLLLHHHHHHHHHHHHHHLLLLLEEEEEEEEEEHHHHLLL DSSP HHHHHHHHHHHLH.HHLLllllLLLHHHHHHHHLLEEEEEEELLLLLLLEEEEEEEELLLLLEEEEEEEEELLLLEEEEEEELLEEEEEEL 1ygA EVLRLSALRGLFS.AVIEdavtFVNAPALAAERGVTAEICKASESPNHRSVVDVRAVGADGSVVTVSGTLYGPQLSQKIVQINGRHFDLRA      |||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1ygB EVLRLSALRGLFSaVIED.avtFVNAPALAAERGVTAEICKASESPNHRSVVDVRAVGADGSVVTVSGTLYGPQLSQKIVQINGRHFDLRA DSSP HHHHHHHHHHHHHlLLLL.lllLLHHHHHHHHLLLEEEEEEELLLLLLLEEEEEEEEELLLLEEEEEEEEELLLLEEEEEEELLEEEEEEL DSSP LLEEEEEEELLLLLHHHHHHHHHHHLLLLEEEEEEEELLLLLLEEEEEEELLLLLHHHHHHHHHHHLEEEEEEEELL 1ygA QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQDVPDDVRTAIAAAVDAYKLEVVDLS      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1ygB QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQDVPDDVRTAIAAAVDAYKLEVVDLS DSSP LLEEEEEEEELLLLHHHHHHHHHHHLLLLEEEEEEEELLLLLEEEEEEEELLLLLHHHHHHHHHHLLLLEEEEEELL *Z-score 34.9  AR 335  RMSD 13.3A  SI 97%

Structural alignment by DaliLite

(5) Cluster 55

				Z-Score: 2.2 AR: 50 RMSD: 4.8A SI: 78%
1zme C (len 70)	1zme D (len 70)		DaliLite result

site   ++++++++++++++++++++++++++++ 1zmC SVACLSCRKRHIKCPGGNPCQKCVTSNAICEYLEPSKKIVVSTKYLQQLQKDLNDKTEENNRLKALLLER code --00QAAAABR000R000O0QAAAABR0000O0000000000QAAAAAAAAAAAAAAAAAAAAAAAAB-- LCS    00QAAAABR000R000O0QAAAABR0000 0000000000QAAAAAAAAAAAAAAAAAAAAAAAAB code --00QAAAABR000R000O0QAAAABR000000000000000QAAAAAAAAAAAAAAAAAAAAAAAAB-- 1zmD SVACLSCRKRHIKCPGGNPCQKCVTSNAICEYLEPSKKIVVSTKYLQQLQKDLNDKTEENNRLKALLLER site   ++++++++++++++++++++++++++++ *RATIO :  lcs/trimmed_seq_a = 0.985 (=   65/   66), lcs/trimmed_seq_b = 0.985 (=   65/   66)

Structural alignment by ComSubstruct + manual inspection

DSSP llllhhhhhhllLLLL..LLLLhhHHHL........llllllLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHLLLL 1zmC svaclscrkrhiKCPG..GNPCqkCVTS........naiceyLEPSKKIVVSTKYLQQLQKDLNDKTEENNRLKALLLER                           |                    |||||||||||||||||||||||||||||||||||||| 1zmD ........svacLSCRkrHIKC..PGGNpcqkcvtsnaiceyLEPSKKIVVSTKYLQQLQKDLNDKTEENNRLKALLLER DSSP ........llllHHHHhhLLLL..LLLLllhhhhllllllllLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLL *Z-score 2.2  AR 50  RMSD 4.8A  SI 78%

Structural alignment by DaliLite

[The DSSP code]

• H = alpha helix
• B = residue in isolated beta-bridge
• E = extended strand, participates in beta ladder
• G = 3-helix (3/10 helix)
• I = 5 helix (pi helix)
• T = hydrogen bonded turn
• S = bend
• L = no assigned structure

[The 5-tile code]

• 0 = DDDDD    (extended strand, small blue spheres)
• 1 = DDDDU
• 2 = DDDUD
• 3 = DDDUU
• 8 = DUDDD
• 9 = DUDDU
• A = DUDUD    (helix, large red spheres)
• B = DUDUU    (turn, large yellow spheres)
• G = UDDDD
• H = UDDDU
• I = UDDUD
• J = UDDUU
• O = UUDDD
• P = UUDDU
• Q = UUDUD    (turn, large yellow spheres)
• R = UUDUU    (turn, large yellow spheres)