[Cluster 56, 58, 59, and 60]


(1) Cluster 56

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   Z-Score: 2.3
AR: 39
RMSD: 6.4A
SI: 74%
2beq D (len 46) 2beq F (len 46)
DaliLite result

site 
2beD  LGDISGINASVVNIQKEIDRLNEVAKNLNESLI    DLQELGKYEQYIK
code  --RHQBG000000RQAAAAAAAAAAAJQAABGR    0QAAAAAAAAA--

LCS     R QBG000000RQAAAAAAAAAAA    B R    0QAAAA  AAA
code --0R QBG000000RQAAAAAAAAAAA    B0RRG000QAAAABQAAA--
2beF LGDI SGINASVVNIQKEIDRLNEVAK    NLNESLIDLQELGKYEQYIK
site 


*RATIO :  lcs/trimmed_seq_a = 0.810 (=   34/   42), lcs/trimmed_seq_b = 0.810 (=   34/   42)
Structural alignment by ComSubstruct + manual inspection
DSSP LLLLLLLLLLLLLLHHHHHHHHHHHLLHhHHLLlhhhhhHHHHHHL......
2beD LGDISGINASVVNIQKEIDRLNEVAKNLnESLIdlqelgKYEQYIK......
     ||||||||||||||||||||||||||||                 |
2beF LGDISGINASVVNIQKEIDRLNEVAKNL.NESL.....iDLQELGKyeqyik
DSSP LLLLLLLLLLLLLLHHHHHHHHHHHHLL.LLLL.....lLHHHHLLhhhhhl


*Z-score 2.3  AR 39  RMSD 6.4A  SI 74%
Structural alignment by DaliLite


(2) Cluster 58

(2-1)
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   Z-Score: 22.7
AR: 212
RMSD: 9.4A
SI: 99%
1jvk A (len 215) 1jvk B (len 214)
DaliLite result

site 
1jvA TALTQPASVSGSPGQSITVSCTGVSSIVG  S  YNLVSWYQQHPGKAPKLLTY EVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEADYYCS
code --0000R000000RG0000001RR00O00  0  0RO00000000RG0000300 RR00000RG0QBG000000RG000000R00QABRG00000

LCS     000R000000RG0000001    O    0  0R 00000000RG0000 00 RR00000R 0QBG000000RG000000R00QAB G00000
code --G000R000000RG0000001    OQABG0RR0RR00000000RG0000 001RR00000R00QBG000000RG000000R00QABGG00000
1jvB TALTQPASVSGSPGQSITVSCT    GVSSIVGSYNLVSWYQQHPGKAPKL LTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEADYYCS
site

site 
1jvA SYDGSSTSVVFGGGTKLT VLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTKPSKQSNNKYAASS
code 0000ABR00000R00000 01R00000000000000QAAAABRG00000000R00O3G000000RRRG0000R000000000QBRG00000

LCS  000  BR 0000R00000 0 R00000000000000QAAAABRG00000000R00G000000  RG0000R000000000QBRG00000
code 000QBBRG0000R00000R0 R00000000000000QAAAABRG00000000R00ORG00000000RG0000R000000000QBRG00000
1jvB SYDGSSTSVVFGGGTKLTVL GQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTKPSKQSNNKYAASS
site 

site                   +++++++
1jvA YLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTAC
code 00000QAAAABGR00000000RRG000000000--

LCS  00000QAAAABGR00000000RRG00000000
code 00000QAAAABGR00000000RRG00000000--
1jvB YLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTA
site                   +++++++


*RATIO :  lcs/trimmed_seq_a = 0.910 (=  192/  211), lcs/trimmed_seq_b = 0.914 (=  192/  210)
Structural alignment by ComSubstruct + manual inspection
DSSP LLLLLLLEEEELLLLEEEEEEELL.LLLLllLLLEEEEEELLLLLLEEEELLLLLLLLLLLLLEEEEEELLEEEEEEELLLHHHLEEEEEE
1jvA TALTQPASVSGSPGQSITVSCTGV.SSIVgsYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEADYYCS
     |||||||||||||||||||||||| |     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1jvB TALTQPASVSGSPGQSITVSCTGVsSIVG.sYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEADYYCS
DSSP LLLLLLLEEEELLLLLEEEEEELLlLLLL.lLLLEEEEEELLLLLLEEEELLLLLLLLLLLLLEEEEEELLEEEEEELLLLHHHLEEEEEE


DSSP ELLLLLLLLEELLLEEEEELLLLLLLLEEEEELLLHHHHHLLLEEEEEEEEEELLLLLEEEEEELLEELLLLEEELLLEELLLLLEEEEE
1jvA SYDGSSTSVVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTKPSKQSNNKYAASS
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1jvB SYDGSSTSVVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTKPSKQSNNKYAASS
DSSP EEELLLLEEEELLLEEEEELLLLLLLLEEEEELLLHHHHHLLLEEEEEEEEEELLLLLEEEEELLLLEELLLEEELLLEELLLLLEEEEE


DSSP EEEELHHHHHLLLLEEEEEEELLEEEEEEELLLLl
1jvA YLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTAc
     ||||||||||||||||||||||||||||||||||
1jvB YLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTA.
DSSP EEEELHHHHHHLLLEEEEEEELLEEEEEEELLLL.


*Z-score 22.7  AR 212  RMSD 9.4A  SI 99%
Structural alignment by DaliLite

(2-2)
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   Z-Score: 23.0
AR: 211
RMSD: 9.3A
SI: 99%
1jvk B (len 214) 1lgv A (len 213)
DaliLite result

site 
1jvk TALTQPASVSGSPGQSITVSCTGVSSIVGS    YN LVSWYQQHP GKAPKL LTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEADYYCS
code --G000R000000RG0000001OQABG0RR    0R R00000000 RG0000 001RR00000R00QBG000000RG000000R00QABGG00000

LCS     000R000000RG0000001      RR    0R R00000000 RG0000 00 RR0000 R 0QBG000000RG000000R00QAB G00000
code --0000R000000RG0000001      RR001B0R0R000000000RG0000300 RR00001RG0QBG000000RG000000R00QABOG00000
1lgv TALTQPASVSGSPGQSITVSCT      GVSSIVGSYNLVSWYQQHPGKAPKLLTY EVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEADYYCS
site

site 
1jvk SYDGSSTSVVFGGGTKLTVL GQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTKPSKQSNNKYAASS
code 000QBBRG0000R00000R0 R00000000000000QAAAABRG00000000R00ORG00000000RG0000R000000000QBRG00000

LCS  000Q BRG0000R00000 0 R00000000000000QAAAABRG00000000R00ORG000000  RG0000R000000000QBRG00000
code 000QABRG0000R00000 01R00000000000000QAAAABRG00000000R00ORG000000RRRG0000R000000000QBRG00000
1lgv SYDGSSTSVVFGGGTKLT VLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTKPSKQSNNKYAASS
site 

site                   +++++++
1jvk YLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTA
code 00000QAAAABGR00000000RRG00000000--

LCS  00000QAAAABGR00000000RRG0000000
code 00000QAAAABGR00000000RRG0000000--
1lgv YLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPT
site                   +++++++


*RATIO :  lcs/trimmed_seq_a = 0.924 (=  194/  210), lcs/trimmed_seq_b = 0.928 (=  194/  209)
Structural alignment by ComSubstruct + manual inspection
DSSP LLLLLLLEEEELLLLLEEEEEELLlLLLL.lLLLEEEEEELLLLLLEEEELLLLLLLLLLLLLEEEEEELLEEEEEELLLLHHHLEEEEEE
1jvk TALTQPASVSGSPGQSITVSCTGVsSIVG.sYNLVSWYQQHPGKAPKLLTYEVNKRPSGVLLLEEEEEELLEEEEEELLLLHHHLEEEEEE
     |||||||||||||||||||||||| |     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1lgv TALTQPASVSGSPGQSITVSCTGV.SSIVgsYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEADYYCS
DSSP LLLLLLLEEEELLLLLEEEEEELL.LLLLllLLLEEEEEELLLLLLEEEELLLLLLLLLLLLLEEEEEELLEEEEEELLLLHHHLEEEEEE


DSSP EEELLLLEEEELLLEEEEELLLLLLLLEEEEELLLHHHHHLLLEEEEEEEEEELLLLLEEEEELLLLEELLLEEELLLEELLLLLEEEEE
1jvk SYDGSSTSVVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTKPSKQSNNKYAASS
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1lgv SYDGSSTSVVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTKPSKQSNNKYAASS
DSSP EELLLLLLEEELLLEEEEELLLLLLLLEEEEELLLHHHHHLLLEEEEEEEEEELLLLLEEEEEELLEELLLLEEELLLEELLLLLEEEEE


DSSP EEEELHHHHHHLLLEEEEEEELLEEEEEEELLLl
1jvk YLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTa
     |||||||||||||||||||||||||||||||||
1lgv YLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPT.
DSSP EEEELHHHHHLLLLEEEEEEELLEEEEEEELLL.


*Z-score 23.0  AR 211  RMSD 9.3A  SI 99%
Structural alignment by DaliLite


(3) Cluster 59

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   Z-Score: 26.2
AR: 143
RMSD: 1.1A
SI: 100%
1sk4 A (len 162) 1twq A (len 165)
DaliLite result

site 
1sk4   PNIIKRSAWEARETHCPKMNLPAKYVIIIHTAGTSCTVSTDCQTVVRNIQSFHMDT RNFCDIGYHFLVGQDGGVYEGVGWHIQGSHTYGF
code   --000QAABR00000000000O0R000000RRG0000GQAAAAAAAAAAAAAAGB0 BR0R00RGR0000QBR00000R0QGG00RG00QH

LCS      000QAABR00000000000O0R000000RRG0000 QAAAAAAAAAAAAAAG 0 BR0R00RGR0000QBR00000R0QGG00RG00QH
code --0O000QAABR00000000000O0R000000RRG00000QAAAAAAAAAAAAAAG 01BR0R00RGR0000QBR00000R0QGG00RG00QH
1twq VCPNIIKRSAWEARETHCPKMNLPAKYVIIIHTAGTSCTVSTDCQTVVRNIQSFHM DTRNFCDIGYHFLVGQDGGVYEGVGWHIQGSHTYGF
site

site 
1sk4 NDIALGIAFIGYFVEKPPNAAALEAAQDLIQ AVVEGYLTPNYLLMGHSDVVNILS PGQ  A LYNIISTWPHFKH
code QA0G000000001QB0000QAAAAAAAAAAB QAABRR00QB00000QABGQBG00 0R0  Q AAAAAABG0R0--

LCS  Q 0G000000000000QAAAAAAAAAA   AABRR 0QB00000QAB    00 0R0  Q AAAAAABG0R0
code QB0G000000001R00000QAAAAAAAAAAAAAAABRRG0QB00000QAB    00R0R0O0QAAAAAAABG0R0--
1twq NDIALGIAFIGYFVEKPPNAAALEAAQDLIQCAVVEGYLTPNYLLMGHSD    VVNILSPGQALYNIISTWPHFKH
site


*RATIO :  lcs/trimmed_seq_a = 0.924 (=  146/  158), lcs/trimmed_seq_b = 0.907 (=  146/  161)
Structural alignment by ComSubstruct + manual inspection
DSSP ..LLLLLHHHHLLLLLLLLLLLLLEEEEEEEELLLLLLLLHHHHHHHHHHHHHHHHHLLLLLLLLLLEEELLLLLEEELLLLLLLLLLLLLL
1sk4 ..PNIIKRSAWEARETHCPKMNLPAKYVIIIHTAGTSCTVSTDCQTVVRNIQSFHMDTRNFCDIGYHFLVGQDGGVYEGVGWHIQGSHTYGF
       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1twq vcPNIIKRSAWEARETHCPKMNLPAKYVIIIHTAGTSCTVSTDCQTVVRNIQSFHMDTRNFCDIGYHFLVGQDGGVYEGVGWHIQGSHTYGF
DSSP llLLLLLHHHHLLLLLLLLLLLLLEEEEEEEELLLLLLLLHHHHHHHHHHHHHHHHHLLLLLLLLLLEEELLLLLEEELLLLLLLLLLLLLL


DSSP LLLEEEEEELLLLLLLLLLHHHHHHHHHHHL.LLLLLLEEEEEEEEEHHHLLLLlllllhhhhhhllllllll
1sk4 NDIALGIAFIGYFVEKPPNAAALEAAQDLIQ.AVVEGYLTPNYLLMGHSDVVNIlspgqalyniistwphfkh
     ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
1twq NDIALGIAFIGYFVEKPPNAAALEAAQDLIQcAVVEGYLTPNYLLMGHSDVVNIlspgqalyniistwphfkh
DSSP LLLEEEEEELLLLLLLLLLHHHHHHHHHHHHhHHHHLLEEEEEEEEEHHHHLLLllllhhhhhhhllllllll


*Z-score 26.2  AR 143  RMSD 1.1A  SI 100%
Structural alignment by DaliLite


(4) Cluster 60

(4-1)
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   Z-Score: 19.6
AR: 164
RMSD: 11.2A
SI: 67%
2mcg 1 (len 215) 2mcg 2 (len 215)
DaliLite result

site 
2mc1 SALTQ
P PSASGSLGQSVTISCTGTSSDVG   GY NYVSWYQQH AGKAPKVIIYEVNKRPSGVPDRF SGSKSGNTASLTVSGLQAEDEADYYCS
code --0000 0000000BG0000000001R1RQ   AB RG0000000 0RG0000000R0R00R1RG01RG 0000R0RG000000R00QABGG00000

LCS    0000 0000000  000000000    Q   AB R 0000000 0RG0 00 00R0R00    0 RG 0000 0RG000000R00QAB G00000
code --0000R00000000 000000000    Q801AB0R 0000000R0RG0R00R00R0R0000000 RG0000000RG000000R00QABRG00000
2mc2 SALTQPPSASGSLGQ SVTISCTGT    SSDVGGYN YVSWYQQHAGKAPKVIIYEVNKRPSGVP DRFSGSKSGNTASLTVSGLQAEDEADYYCS
site

site 
2mc1 SY  EGSDNFVFGTGTKVTVLGQ  PKANPT VTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSY
code 00  0RQBG0000300000R0R0  000000 0000000QAAAABRG00000000000RRG0000000RRG003G0000000000QBRG000000

LCS  00  0R  G0000 00000 0 0  000000 0000000QAAAABRG00000000 0 RRG0000000R G00 G 000000000  RG000000
code 00300R  G0000 00000 0 01R000000R0000000QAAAABRG00000000R01RRG0000000R0G00RGR000000000RGRG000000
2mc2 SYEGSD  NFVFG TGTKV T VLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSY
site


site                  +++++++
2mc1 LSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
code 0000QAAAAGGR000000000RG000000000R--

LCS  0000QAAAA GR000 0000 RG0000000  R
code 0000QAAAABGR000R0000RRG0000000  RG0--
2mc2 LSLTPEQWKSHRSYSCQVTHEGSTVEKTVA  PTECS
site                  +++++++


*RATIO :  lcs/trimmed_seq_a = 0.844 (=  178/  211), lcs/trimmed_seq_b = 0.844 (=  178/  211)
Structural alignment by ComSubstruct + manual inspection
DSSP LLLLLLLLEEELLLLLEEEEEELLLlLLLL.LLLLEEEEELLLLLLLLLLLLLLLLLLLLLLLLLEEELLLEEEEEELLLLHHHLEEEEEE
2mc1 SALTQPPSASGSLGQSVTISCTGTSsDVGG.YNYVSWYQQHAGKAPKVIIYEVNKRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYCS
     |||||||||||||||||||||||||    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
2mc2 SALTQPPSASGSLGQSVTISCTGTS.SDVGgYNYVSWYQQHAGKAPKVIIYEVNKRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYCS
DSSP LLLLLLLLLLLLLLLLLEEEEELLL.LLLLlLLLEEEELLLLLLLLLLLLLLLLLLLLLLLLLEEEEELLLEEEEEELLLLLLLLLLLEEE


DSSP EELLLLLEEELLLEEEEELLllllllLEEEELllhhHHHL.......lllEEEEEEEEEllllleeeEEEL.....leeelLLEEEEEEEellllleEEEEE
2mc1 SYEGSDNFVFGTGTKVTVLGqpkanpTVTLFPpsseELQA.......nkaTLVCLISDFypgavtvaWKAD.....gspvkAGVETTKPSkqsnnkyAASSY
     ||||||||||||||||||||        |                                                          | |
2mc2 SYEGSDNFVFGTGTKVTVLG..qpkaNPTVTL...fPPSSeelqankatlVCLISDFYP....gavtVAWKadgspvkagvETTKPSKQS.....nnKYAAS
DSSP EELLLLLEELLLLLLLLLLL..llllLLLLEE...eLLLHhhhhlllleeEEEEEEELL....llllEEEEelleeellllLLLLLEELL.....llLEEEE


DSSP EeLLHH.....hhhhlLLEEeeeelllleeeEEELLLLLL..
2mc1 LsLTPE.....qwkshRSYScqvthegstveKTVAPTECS..
                      |
2mc2 S.YLSLtpeqwkshrsYSCQ....vthegstVEKTVAPTEcs
DSSP E.EEELlhhhhhhlllEEEE....eeelleeEEEEELLLLll


*Z-score 19.6  AR 164  RMSD 11.2A  SI 67%
Structural alignment by DaliLite

(4-2)
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   Z-Score: 16.9
AR: 158
RMSD: 9.8A
SI: 76%
2mcg 1 (len 215) 3mcg 2 (len 215)
DaliLite result

site
2mcg SALTQPP SASG  SLGQSVTISCTG  TS S DVGGYNYVSWYQQHAGKAPKVI IYEVNKR      PSGVPDRFSGSKSGNT ASLT V S GLQAEDEADYYCS
code --00000 0000  00BG00000000  01 R 1RQABRG00000000RG00000 00R0R00      R1RG01RG0000R0RG 0000 0 0 R00QABGG00000

LCS    0000  0000  00  00000000  01 R 1R      0000000R 00000 00 0R00      R1R   R 0000 0R  0000 0 0 R00     00000
code --0000RG0000QB00  00000000QB01GRG1R      0000000R 00000R00 0R00000QBJR1R   R 0000 0RRR0000R0R00R00     00000
3mcg SALTQPPSASGSLGQS  VTISCTGTSSDVGGYNY      VSWYQQHA GKAPKVII YEVNKRPSGVPDR   F SGSK SGNTASLTVSGLQAED     EADYY
site

site 
2mcg SYEGSD  NFVFGTGTKVTVLGQPKANPTVTLFPPS     SEELQANKATLVCLISD  FYP GAVTVAWKADGSP VKAGVE   TTKP SKQSNNKYAASSY
code 000RQB  G0000300000R0R00000000000000     QAAAABRG000000000  00R RG0000000RRG0 03G000   0000 000QBRG000000

LCS  000R    G0000 00000 0 0   0000000000     QA   B  000000000  00  R 0000000   0 0 G000   0000 000  RG000000
code 000RR1RRG0000 00000 0 01RG0000000000RGR1RQA   B  000000000RR0010R 0000000   0R0 G000RGG0000R0000 RG000000
3mcg CSSYEGSDNFVFG TGTKV T VLGQPKANPTVTLFPPSSEEL   Q  ANKATLVCLISDFYPG AVTVAWK   ADG SPVKAGVETTKPSKQS NNKYAASS
site


site                      +++++++
2mcg LS LT PEQWKSH  RSYSCQVTHEGSTVEKTVAPTECS
code 00 00 QAAAAGG  R000000000RG000000000R--

LCS  00 00 Q    G   R000000 0 RG00000000 R
code 00R000QB   GQABR000000R0RRG00000000 R0--
3mcg YLSLTPEQ   WKSHRSYSCQVTHEGSTVEKTVAP TECS
site                      +++++++


*RATIO :  lcs/trimmed_seq_a = 0.758 (=  160/  211), lcs/trimmed_seq_b = 0.758 (=  160/  211)
Structural alignment by ComSubstruct + manual inspection
DSSP LLLLLLLLEEELLLLLEEEEEELLLlLLLL.LLLLEEEEELLLLLLLLLLLLLLLLLLLLLLLLLEEELLLEEEEEELLLLHHHLEEEEEE
2mcg SALTQPPSASGSLGQSVTISCTGTSsDVGG.YNYVSWYQQHAGKAPKVIIYEVNKRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYCS
     |||||||||||||||||||||||||    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3mcg SALTQPPSASGSLGQSVTISCTGTS.SDVGgYNYVSWYQQHAGKAPKVIIYEVNKRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYCS
DSSP LEELLLLLLEELLLLEEEEEEELLH.HHHLlLLLEEEEELLLLLLLEEEELLLLLLLLLLLLLLLEEEELLEEEEEEELLLLLLLLLEEEE


DSSP EELLLLLEEELLLEEEEELLLLLLllleEEELLLHHHHH..LLLLEEEeEEEEELlllleeeeeelleeellleeEEEEEellllLEEEEee
2mcg SYEGSDNFVFGTGTKVTVLGQPKAnptvTLFPPSSEELQ..ANKATLVcLISDFYpgavtvawkadgspvkagveTTKPSkqsnnKYAASsy
     ||||||||||||||||||||||||        | | |                                      |         |||||
3mcg SYEGSDNFVFGTGTKVTVLGQPKA.nptVTLFPPSSEELqaNKATLVClISDFYPgavtvawkadgspvkagvetTKPSK.qsnnKYAAS..
DSSP ELLLLLLLEEELLLLLEELLLLLL.lllEEELLLLLLHHhhLLLLEEEeELLLLLlleeeeeeelllllllllllLLLLL.llllLLLLE..


DSSP eeLLHHhhhhllleeeeeelllleeeeeELLLLLL..
2mcg lsLTPEqwkshrsyscqvthegstvektVAPTECS..
       |
3mcg syLSLTpeqwkshrsyscqvthegstveKTVAPTEcs
DSSP eeELLLhhhlhhhlleeeeeeelleeeeEEELLLLll


*Z-score 16.9  AR 158  RMSD 9.8A  SI 76%
Structural alignment by DaliLite

(4-3)
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   Z-Score: 17.9
AR: 214
RMSD: 10.6A
SI: 100%
2mcg 2 (len 215) 3mcg 1 (len 215)
DaliLite result

site 
2mcg SALTQPPSASGSLGQS   VTISCTGTSSDVGGY  N YVSWYQQHAGKAPKVIIYEVN KR P SGV   P DRFSG   S KSGNTASLTVSGLQAEDE ADYYCS
code --0000R000000000   00000000Q801AB0  R 0000000R0RG0R00R00R0R 00 0 000   0 RG000   0 000RG000000R00QABR G00000

LCS        R000000000   00000000  0  B0  R 0 00000R R  R00  0R0R 00 0 000   0 RG000   0 000  000000R     R G00000
code    --R0000000001RG00000000  0Q B0QGRG0G00000R R  R00  0R0RR00R0R0001BG01RG000RRR0G000  000000RHR   R G00000
3mcg    SALTQPPSASGSLGQSVTISCTG  TS SDVGGYNYVSWYQQ H  AGK  APKVIIYEVNKRPSGVPDRFSGSKSGNTASL  TVSGLQAED   E ADYYCS
site

site 
2mcg SYEGSDNFVFGTGTKVTVLG QP KANPTVTLFPPSSEELQA NKATLVCLISDFYP GAVTVAWKADGSPVKAGVE TTKP SKQSNNKY AASSY
code 00300RG000000000001R 00 0000R0000000QAAAAB RG00000000R01R RG0000000R0G00RGR00 0000 000RGRG0 00000

LCS  00 00RG000000 000 1R 00 0000 0000000Q    B R 00000000 0   R 0000000R0 00   00 0000 000  R 0 00000
code 00000RG000000R000 1RG00R0000 0000000QBH  B1RR000000000000BR00000000R0000   0030000300000R 0O00000
3mcg SYEGSDNFVFGTGTKVT VLGQPKANPT VTLFPPSSEE  LQANKATLVCLISDFYPGAVTVAWKADGSPV   KAGVETTKPSKQSN NKYAASS
site


site                      +++++++
2mcg LSLT PEQWKSHR   SYSCQVTHEGSTVEKTVAPTECS
code 0000 QAAAABGR   000R0000RRG0000000RG0--

LCS  0000 QA   BG    000 0000 RG0000000  0
code 00000QA   BGQBG000000000QRG0000000000--
3mcg YLSLTPE   QWKSHRSYSCQVTHEGSTVEKTVAPTECS
site                      +++++++


*RATIO :  lcs/trimmed_seq_a = 0.768 (=  162/  211), lcs/trimmed_seq_b = 0.768 (=  162/  211)
Structural alignment by ComSubstruct + manual inspection
DSSP LLLLLLLLLLLLLLLLLEEEEELLLLLLLLLLLEEEELLLLLLLLLLLLLLLLLLLLLLLLLEEEEELLLEEEEEELLLLLLLLLLLEEE
2mcg SALTQPPSASGSLGQSVTISCTGTSSDVGGYNYVSWYQQHAGKAPKVIIYEVNKRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYCS
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3mcg SALTQPPSASGSLGQSVTISCTGTSSDVGGYNYVSWYQQHAGKAPKVIIYEVNKRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYCS
DSSP LLLLLLLLLLLLLLEEEEEEEELLLHHHHHLLLEEEEEELLLLLEEEEELLLLLLLLLLLLLEEEEEELLEEEEEEEELLLLLLLEEEEE


DSSP EELLLLLEELLLLLLLLLLLLLLLLLLLEEELLLHHHHHLLLLEEEEEEEEELLLLLLEEEEELLEEELLLLLLLLLEELLLLLEEEEEE
2mcg SYEGSDNFVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSY
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3mcg SYEGSDNFVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSY
DSSP EEELLLEEEELLLEELLLLLLLLLLLEEEEELLLHHHHLLLLLLEEEEEELLLLLLLEEEEEELLEEELLLEELLLLLLLLLLLLLEEEE


DSSP EELLHHHHHHLLLEEEEEEELLEEEEEEELLLLLl
2mcg LSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECs
     ||||||||||||||||||||||||||||||||||
3mcg LSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECs
DSSP ELLLHHHHHLLLLEEEEEELLLLEELLEELLLLLl


*Z-score 17.9  AR 214  RMSD 10.6A  SI 100%
Structural alignment by DaliLite

(4-4)
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   Z-Score: 16.2
AR: 108
RMSD: 1.7A
SI: 100%
3mcg 1 (len 215) 3mcg 2 (len 215)
DaliLite result

site 
3mc1 SALTQPP  SASG  SLGQSVTISCTGTSSDVGGY  NYVSWYQQHAG KAPKVIIYEVNKR PSGVPDRFSGS   K SGNTASLT   VSGLQAED  EADYYCS
code --R0000  0000  01RG000000000QB0QGRG  0G00000RRR0 00R0RR00R0R00 01BG01RG000   R RR0G0000   00000RHR  RG00000

LCS     0000  0000  0   000000000QB0 GRG  0 00000   0 00 0  00R0 00 0   0   000   R RR0 0000   0000 R R  R 00000
code --0000RG0000QB0   000000000QB01GRG1R0 00000   0R00 0  00R0 00R0   0   000QBJR1RR0 0000RRR0000 R0R00R 00000
3mc2 SALTQPPSASGSLGQ   SVTISCTGTSSDVGGYNYV SWYQQ   HAGK A  PKVI IYEV   N   KRPSGVPDRFS GSKSGNTASLT VSGLQA EDEAD
site

site 
3mc1 SYEGSD    NFVFGTGTKVTVLGQP KANPTVTLFPPSSEELQA N   KATLVCLIS  DF YPGAVTVAWKADG SPVKAGVETTKPSKQSN NKYAASSY
code 00000R    G000000R0001RG00 R00000000000QBHB1R R   000000000  00 0BR00000000R0 0000030000300000R 0O000000

LCS  00000R    G000000 000   00 R 0000000000     R R   000000000  00 0 R00000000R0 000   0000  0000R 0 000000
code 00000RR1RRG000000 000   001RG0000000000   RGR1RQAB000000000RR0010 R00000000R0G000RGG0000 R0000RG0 000000
3mc2 YYCSSYEGSDNFVFGTG TKV   TVLGQPKANPTVTLF   PPSSEELQANKATLVCLISDFYP GAVTVAWKADGSPVKAGVETTK PSKQSNNK YAASSY
site


site                    +++++++
3mc1 L SLTPEQWK SHRSYSCQVTHEGSTVEKTVAPTECS
code 0 000QABGQ BG000000000QRG0000000000--

LCS  0 000Q BGQ B  000000 0 RG00000000 0
code 0R000Q BGQAB R000000R0RRG00000000R0--
3mc2 LSLTPE QWKSH RSYSCQVTHEGSTVEKTVAPTECS
site                    +++++++


*RATIO :  lcs/trimmed_seq_a = 0.782 (=  165/  211), lcs/trimmed_seq_b = 0.782 (=  165/  211)
Structural alignment by ComSubstruct + manual inspection
DSSP LLLLLLLLLLLLLLEEEEEEEELLLHHHHHLLLEEEEEELLLLLEEEEELLLLLLLLLLLLLEEEEEELLEEEEEEEELLLLlLLEEEEE
3mc1 SALTQPPSASGSLGQSVTISCTGTSSDVGGYNYVSWYQQHAGKAPKVIIYEVNKRPSGVPDRFSGSKSGNTASLTVSGLQAEdEADYYCS
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
3mc2 SALTQPPSASGSLGQSVTISCTGTSSDVGGYNYVSWYQQHAGKAPKVIIYEVNKRPSGVPDRFSGSKSGNTASLTVSGLQAEdEADYYCS
DSSP LEELLLLLLEELLLLEEEEEEELLHHHHLLLLLEEEEELLLLLLLEEEELLLLLLLLLLLLLLLEEEELLEEEEEEELLLLLlLLLEEEE


DSSP EEELLLEEEELLLEELLLLllllllleeeeelllhhhhlllllleeeeeellllllleeeeeelleeellleellllllllllllleeee
3mc1 SYEGSDNFVFGTGTKVTVLgqpkanptvtlfppsseelqankatlvclisdfypgavtvawkadgspvkagvettkpskqsnnkyaassy
     |||||||||||||||||||
3mc2 SYEGSDNFVFGTGTKVTVLgqpkanptvtlfppsseelqankatlvclisdfypgavtvawkadgspvkagvettkpskqsnnkyaassy
DSSP ELLLLLLLEEELLLLLEELlllllllleeellllllhhhhlllleeeeellllllleeeeeeelllllllllllllllllllllllleee
DSSP ELLLLLLLEEELLLLLEELlllllllleeellllllhhhhlllleeeeellllllleeeeeeelllllllllllllllllllllllleee


DSSP elllhhhhhlllleeeeeelllleelleellllll
3mc1 lsltpeqwkshrsyscqvthegstvektvaptecs
     
3mc2 lsltpeqwkshrsyscqvthegstvektvaptecs
DSSP elllhhhlhhhlleeeeeeelleeeeeeellllll


*Z-score 16.2  AR 108  RMSD 1.7A  SI 100%
Structural alignment by DaliLite



[The DSSP code]

[The 5-tile code]