(1-6)
 |
 |
 |
Z-Score:
21.8
AR: 140 RMSD: 12.8A SI: 94% |
|
| 3bjl A (len 215) | 3bjl
B (len 215) |
DaliLite result | ||
| site 3bjA SVLTQPPSASGTPGQRVTISCSGSSSNIGENSVTWYQHL SGTAPKLLIYEDNSRASGVSDRFSASKSGTSASLAISG LQPEDETDYYCAA code --0000R000000R0000000000QB0QA0000000000 0G00R00000RQBG000R00QBG000000RG0000R00 00QAJRG000000 LCS 000R000000 0000000000QB0Q 0000000000 0G00 00000R 000R00QBG0000 0RG0000 00 00QA G000000 code --3000R00000000000000000QB0QB0000000000R0G00 00000RR00000R00QBG0000R0RG0000 00R00QABGG000000 3bjB SVLTQPPSASGTPGQRVTISCSGSSSNIGENSVTWYQHLSGTAP KLLIYEDNSRASGVSDRFSASKSGTSASLA ISGLQPEDETDYYCAA site site 3bjA WDDSL DVAVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVC LISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSY code 00QAR RG0000R00000R0R000000R00000002AAAABRG00000 000R00O0G0000000RRG0000R000000000QBRG000000 LCS 00 R RG0000R00000 0 000000 0000000 AAAABR 00000 000R00O0G0000000RRG0 0 R000000000QBRG000000 code 00 R1BRG0000R0000000000000000000000QAAAABR 00000O000R00O0G0000000RRG0R0GR000000000QBRG000000 3bjB WD DSLDVAVFGTGTKVTVLGQPKANPTVTLFPPSSEELQAN KATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSY site site +++++++ 3bjA LSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS code 0000QAAAABGR00000000RRG0000000000-- LCS 0000QAAAABGR00000000 RG0000000000 code 0000QAAAABGR000000000RG0000000000-- 3bjB LSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS site *RATIO : lcs/trimmed_seq_a = 0.900 (= 190/ 211), lcs/trimmed_seq_b = 0.900 (= 190/ 211) |
| Structural alignment by ComSubstruct + manual inspection |
| DSSP LLLLLLLEEEELLLLEEEEEEELLLLLLLLLLLEEEEELLLLLLEEEEELLLEELLLLLLLEEEEELLLEEEEEEELLLHHHLLEEEEEE 3bjA SVLTQPPSASGTPGQRVTISCSGSSSNIGENSVTWYQHLSGTAPKLLIYEDNSRASGVSDRFSASKSGTSASLAISGLQPEDETDYYCAA |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 3bjB SVLTQPPSASGTPGQRVTISCSGSSSNIGENSVTWYQHLSGTAPKLLIYEDNSRASGVSDRFSASKSGTSASLAISGLQPEDETDYYCAA DSSP LLLLLLLEEEELLLLEEEEEEELLHHHHHLLLLEEEEELLLLLLEEEEELLLEELLLLLLLEEEEELLLEEEEEEELLLLLLLLEEEEEE DSSP EELLLLEEEELLLEEEEELLLLlllleeeeELLLHHHHLLLLEEeeeeeeeellllleeeeeellleellleeelllEELL......................llleeeeee 3bjA WDDSLDVAVFGTGTKVTVLGQPkanptvtlFPPSSEELQANKATlvclisdfypgavtvawkadgspvkagvettkpSKQS......................nnkyaassy |||||||||||||||||||||| |||||||||||||| 3bjB WDDSLDVAVFGTGTKVTVLGQPkanptvtlFPPSSEELQANKAT........................lvclisdfyPGAVtvawkadgspvkagvettkpskqsnnkyaas DSSP EELLLLEEEELLLEEEEELLLLlllleeeeELLLHHHHLLLLEE........................eeeeeeeelLLLLleeeeelllllllleeellleellllleeee DSSP eEELHH..hhllllleeeeeeelleelllllLLLLLl 3bjA lSLTPE..qwkshrsyscqvthegstvektvAPTECs | ||||| 3bjB sYLSLTpeqwkshrsyscqvthegstvektvAPTECs DSSP eEEEELhhhhhlllleeeeelllllleeeeeLLLLLl *Z-score 21.8 AR 140 RMSD 12.8A SI 94% |
| Structural alignment by DaliLite |
(1-7)
 |
 |
 |
Z-Score:
20.6
AR: 134 RMSD: 13.3A SI: 97% |
|
| 3bjl B (len 215) | 4bjl
A (len 215) |
DaliLite result | ||
| site 3bjl SVLTQPPSA SGTPGQ RVTISCSGSSSNIGENSVTWYQHLSG TAPKLLIY EDNSRASGVSDRFSASKSGTSASLA ISGLQPEDETDYYCAA code --3000R00 000000 000000000QB0QB0000000000R0 G0000000 RR00000R00QBG0000R0RG0000 00R00QABGG000000 LCS 00 00 000000 000000000Q 0QB0000000000 0 G0000000 RR 000R 0QBG0000 0RG0000 00 00QAB G000000 code --00 00R000000RG000000000QG0QB0000000000 0RG00000000RRG 000RG0QBG000000RG0000R00 00QABRG000000 4bjl SVLT QPPSASGTPGQRVTISCSGSSSNIGENSVTWYQHL SGTAPKLLIYEDNS RASGVSDRFSASKSGTSASLAISG LQPEDETDYYCAA site site 3bjl WDDSLDVA VFGTGT KVTVL GQPKANPTVTLFPPSSEELQAN KATLVCL ISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSY code 00R1BRG0 000R00 00000 000000000000000QAAAABR 00000O0 00R00O0G0000000RRG0R0GR000000000QBRG000000 LCS 00R R 0 000 00 00000 00000000000000QA AABR 00000 0 00 00O0G0000000RRG0 0 000000000QBRG000000 code 00R R 0R000 00R00000R3R00000000000000QAIAABRG00000 0O00 00O0G0000000RRG0000O000000000QBRG000000 4bjl WDD S LDVAV FGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVC LISD FYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSY site site +++++++ 3bjl LSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS code 0000QAAAABGR000000000RG0000000000-- LCS 0000QAAAABGR000000000RG0000000 00 code 0000QAAAABGR000000000RG0000000R00-- 4bjl LSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS site +++++++ *RATIO : lcs/trimmed_seq_a = 0.891 (= 188/ 211), lcs/trimmed_seq_b = 0.891 (= 188/ 211) |
| Structural alignment by ComSubstruct + manual inspection |
| DSSP lLLLLLLEEEELLLLEEEEEEELLHHHHHLLLLEEEEELLLLLLEEEEELLLEELLLLLLLEEEEELLLEEEEEEELLLLLLLLEEEEEE 3bjl sVLTQPPSASGTPGQRVTISCSGSSSNIGENSVTWYQHLSGTAPKLLIYEDNSRASGVSDRFSASKSGTSASLAISGLQPEDETDYYCAA ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 4bjl sVLTQPPSASGTPGQRVTISCSGSSSNIGENSVTWYQHLSGTAPKLLIYEDNSRASGVSDRFSASKSGTSASLAISGLQPEDETDYYCAA DSSP lLLLLLLEEEELLLLLLEEEELLLLLLLLLLLLEEEEELLLLLLEELEEELLEELLLLLLLEEELLLLLLEEEEELLLLHHHLLEEEEEL DSSP EELLLLEEEELLLEEEEELLLLlllleeeeELLLHHHHLLLLEE........................eeeeeeeelLLLLleeeeelllllllleeellleellllleeeeee 3bjl WDDSLDVAVFGTGTKVTVLGQPkanptvtlFPPSSEELQANKAT........................lvclisdfyPGAVtvawkadgspvkagvettkpskqsnnkyaassy |||||||||||||||||||||| |||||||||||||| 4bjl WDDSLDVAVFGTGTKVTVLGQPkanptvtlFPPSSEELQANKATlvclisdfypgavtvawkadgspvkagvettkpSKQS........................nnkyaassy DSSP LLLLLLLLLLLLLLEEEELLLLlllleeeeELLLHHHHHLLLEEeeeeeeeelllleeeeeeelleeellleeelllLLLL........................llleeelee DSSP eeelhhhhhlllleeeeelllllleeeeeLLLLLl 3bjl lsltpeqwkshrsyscqvthegstvektvAPTECs ||||| 4bjl lsltpeqwkshrsyscqvthegstvektvAPTECs DSSP eeelhhhhhhllleeeeeeelleeeeeeeLLLLLl *Z-score 20.6 AR 134 RMSD 13.3A SI 97% |
| Structural alignment by DaliLite |
(1-8)
|
|
 |
 |
Z-Score:
21.5
AR: 152 RMSD: 10.5A SI: 88% |
|
| 3bjl A (len 215) | 4bjl
B (len 215) |
DaliLite result | ||
| site 3bjl SVLTQPPSASGTPGQRVTISCSGSSSNIGENSVTWYQHLS GTAPK LL IYEDNSRASGVSDRFSASKS GTSASLAISGLQPEDETDYYCAA code --0000R000000R0000000000QB0QA00000000000 G00R0 00 00RQBG000R00QBG00000 0RG0000R0000QAJRG000000 LCS 0000R000000R 000000000QB0Q 000000000 G00 0 00 00 000R00QBG00000 0 G0000 0000QA RG000000 code --0000R000000RG000000000QB0QB000000000RQ8G00 0O001RR00 000R00QBG00000O0 G0000O0000QABRG000000 4bjl SVLTQPPSASGTPGQRVTISCSGSSSNIGENSVTWYQHLSGTAP KLLIYEDNS RASGVSDRFSASKSGT SASLAISGLQPEDETDYYCAA site site 3bjl WDDSLDVAVFGTGTKVTV LGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGV ETTKPSKQ SNNKYAASSY code 00QARRG0000R00000R 0R000000R00000002AAAABRG00000000R00O0G0000000RRG0000R0 00000000 QBRG000000 LCS 00QA RG0000R00000R 0 000000 0000000 AAAABRG00000000R00O G0000000R 0000R0 00000000 QBRG000000 code 00QABRG0000R00000R130 000000 0000000QAAAABRG00000000R00ORG0000000R 0000R0R000000000QBRG000000 4bjl WDDSLDVAVFGTGTKVTVLGQ PKANPT VTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKAD GSPVKAGVETTKPSKQSNNKYAASSY site site +++++++ 3bjl LSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS code 0000QAAAABGR00000000RRG0000000000-- LCS 0000Q A BGR00000000RRG0000000 00 code 0000QHAGQBGR00000000RRG0000000R00-- 4bjl LSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS site +++++++ *RATIO : lcs/trimmed_seq_a = 0.891 (= 188/ 211), lcs/trimmed_seq_b = 0.891 (= 188/ 211) |
| Structural alignment by ComSubstruct + manual inspection |
| DSSP LLLLLLLEEEELLLLEEEEEEELLLLLLLLLLLEEEEELLLLLLEEEEELLLEELLLLLLLEEEEELLLEEEEEEELLLHHHLLEEEEEE 3bjl SVLTQPPSASGTPGQRVTISCSGSSSNIGENSVTWYQHLSGTAPKLLIYEDNSRASGVSDRFSASKSGTSASLAISGLQPEDETDYYCAA |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 4bjl SVLTQPPSASGTPGQRVTISCSGSSSNIGENSVTWYQHLSGTAPKLLIYEDNSRASGVSDRFSASKSGTSASLAISGLQPEDETDYYCAA DSSP LLLLLLLEEEELLLLLEEEEEELLLLLLLLLLEEEEEELLLLLLEEEELHHHLLLLLLLLLEEEEEELLEEEEEELLLLHHHLLEEEEEE DSSP EELLLLEEEELLLEEEEELLLLLllleeEEEL.LLHHHHLL.LLEEEEeeeeeellllleeeeeellleellleeeLLLEELlllLEEEEee 3bjl WDDSLDVAVFGTGTKVTVLGQPKanptvTLFP.PSSEELQA.NKATLVclisdfypgavtvawkadgspvkagvetTKPSKQsnnKYAASsy ||||||||||||||||||||||| |||||||| |||||| ||||| 4bjl WDDSLDVAVFGTGTKVTVLGQPK.anptVTLFpPSSEELQAnKATLVC.lisdfypgavtvawkadgspvkagvetTKPSKQsnnKYAAS.. DSSP EELLLLEEEELLLLEEEELLLLL.llleEEEElLLHHHHLLlLEEEEE.eeeeellllleeeeeellleelleeeeLLLEELlllLEEEE.. DSSP eeELHH.hhllllleeeeeeelleelllllLLLLLL. 3bjl lsLTPE.qwkshrsyscqvthegstvektvAPTECS. | 4bjl syLSLTpeqwkshrsyscqvthegstvektVAPTECs DSSP eeEEELhhhhhlllleeeeeeelleeeeeeELLLLLl *Z-score 21.5 AR 152 RMSD 10.5A SI 88% |
| Structural alignment by DaliLite |
(1-9)
 |
 |
 |
Z-Score:
21.0
AR: 161 RMSD: 10.4A SI: 85% |
|
| 4bjl A (len 215) | 4bjl
B (len 215) |
DaliLite result | ||
| site 4bjA SVLTQPPSASGTPGQRVTISCSGSSSNIGENSVTWYQHLSG TAPKLLIYEDNS RASGVSDRFSASKS GTSASLAISGLQPEDETDYYCAA code --0000R000000RG000000000QG0QB00000000000R G00000000RRG 000RG0QBG00000 0RG0000R0000QABRG000000 LCS 0000R000000RG000000000Q 0QB000000000 R G000 00 RR 000R 0QBG00000 0 G0000 0000QABRG000000 code --0000R000000RG000000000QB0QB000000000 RQ8G000O001 RR00000R00QBG00000O0 G0000O0000QABRG000000 4bjB SVLTQPPSASGTPGQRVTISCSGSSSNIGENSVTWYQH LSGTAPKLLIY EDNSRASGVSDRFSASKSGT SASLAISGLQPEDETDYYCAA site site 4bjA WDDSLDVAVFGTGTKVTV LGQPKANPTVTLFPPSSEELQANKATLVCLISD FYPGAVTVAWKADGSPVKA GVETTKPSKQSNNKYAASSY code 00RR0R00000R00000R 3R00000000000000QAIAABRG000000O00 00O0G0000000RRG0000 O000000000QBRG000000 LCS 00 R 0000R00000R 3 00000000000000QA AABRG000000 00 00O G0000000R 0000 000000000QBRG000000 code 00QABRG0000R00000R13 00000000000000QAAAABRG000000 00R00ORG0000000R 0000R0R000000000QBRG000000 4bjB WDDSLDVAVFGTGTKVTVLG QPKANPTVTLFPPSSEELQANKATLVCL ISDFYPGAVTVAWKAD GSPVKAGVETTKPSKQSNNKYAASSY site site +++++++ 4bjA LSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS code 0000QAAAABGR000000000RG0000000R00-- LCS 0000Q A BGR00000000 RG0000000R00 code 0000QHAGQBGR00000000RRG0000000R00-- 4bjB LSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS site +++++++ *RATIO : lcs/trimmed_seq_a = 0.882 (= 186/ 211), lcs/trimmed_seq_b = 0.882 (= 186/ 211) |
| Structural alignment by ComSubstruct + manual inspection |
| DSSP LLLLLLLEEEELLLLLLEEEELLLLLLLLLLLLEEEEELLLLLLEELEEELLEELLLLLLLEEELLLLLLEEEEELLLLHHHLLEEEEEL 4bjA SVLTQPPSASGTPGQRVTISCSGSSSNIGENSVTWYQHLSGTAPKLLIYEDNSRASGVSDRFSASKSGTSASLAISGLQPEDETDYYCAA |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 4bjB SVLTQPPSASGTPGQRVTISCSGSSSNIGENSVTWYQHLSGTAPKLLIYEDNSRASGVSDRFSASKSGTSASLAISGLQPEDETDYYCAA DSSP LLLLLLLEEEELLLLLEEEEEELLLLLLLLLLEEEEEELLLLLLEEEELHHHLLLLLLLLLEEEEEELLEEEEEELLLLHHHLLEEEEEE DSSP LLLLLLLLLLLLLLEEEELLLLllllEEEE.ELLLHHHHHLLLEEEE.eEEEEELllleeeeeeelleeellleeeLLLLlllllLEEELee 4bjA WDDSLDVAVFGTGTKVTVLGQPkanpTVTL.FPPSSEELQANKATLV.cLISDFYpgavtvawkadgspvkagvetTKPSkqsnnKYAASsy |||||||||||||||||||||| |||||||||||||||| |||| ||||| 4bjB WDDSLDVAVFGTGTKVTVLGQP.kanPTVTlFPPSSEELQANKATLVclISDFYP.gavtvawkadgspvkagvetTKPSkqsnnKYAAS.s DSSP EELLLLEEEELLLLEEEELLLL.lllLEEEeELLLHHHHLLLLEEEEeeEEEELL.llleeeeeellleelleeeeLLLEellllLEEEE.e DSSP eEELHHHhhhllleeeeeeelleeeeeEELLLLLL. 4bjA lSLTPEQwkshrsyscqvthegstvekTVAPTECS. 4bjB yLSLTPEqwkshrsyscqvthegstveKTVAPTECs DSSP eEEELHHhhhlllleeeeeeelleeeeEEELLLLLl *Z-score 21.0 AR 161 RMSD 10.4A SI 85% |
| Structural alignment by DaliLite |
[The DSSP code]
[The 5-tile code]
- H = alpha helix
- B = residue in isolated beta-bridge
- E = extended strand, participates in beta ladder
- G = 3-helix (3/10 helix)
- I = 5 helix (pi helix)
- T = hydrogen bonded turn
- S = bend
- L = no assigned structure
[The 5-tile code]
- 0 = DDDDD (extended strand, small blue spheres)
- 1 = DDDDU
- 2 = DDDUD
- 3 = DDDUU
- 8 = DUDDD
- 9 = DUDDU
- A = DUDUD (helix, large red spheres)
- B = DUDUU (turn, large yellow spheres)
- G = UDDDD
- H = UDDDU
- I = UDDUD
- J = UDDUU
- O = UUDDD
- P = UUDDU
- Q = UUDUD (turn, large yellow spheres)
- R = UUDUU (turn, large yellow spheres)