• Backbone structures are obtained using ProteinViewer, where N-terminal is colored red and C-terminal blue.
• In the images, the CA atoms of the variable regions are drawn as large blue sphere.
  
• Click the images to view larger image.
• See the bottom for brief explanation of the DSSP codes and the 5-tile codes. 
• "*" indicates the region of left- or right-handed helical structure.

(1) Cluster 11 (From residue 1 to residue 111): coils of two turns

				Z-Score: 20.0 AR: 110 RMSD: 1.7A SI: 100%
Left-handed (1dcl A)	Right-handed (1dcl B)		DaliLite result

****** 1dcA --000003000000RG0000000000RR0R001R00000000RG0000000RO00001RG0QBG000000RG000000R00QABG00000000RO0RG0000R00000R-- Res  PSALTQPPSASGSLGQSVTISCTGTSSNVGGYNYVSWYQQHAGKAPKVIIYEVNKRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYCSSYEGSDNFVFGTGTKVTVLG 1dcB --00000R000000RG000000000QB0QAG0RR00000000RG0000R00RO00000R00QBG000000RG000000R00QABRG000000031RR000000000000--                               ******

5-tile code sequences

DSSP LLLEELLLEEEELLLLLEEEEEEELLLLLlLLLLEEEEEELLLLLLEEEELLLLLLLLLLLLLEEEEELLLEEEEEELLLLHHHLEEEEEEELLLLLLLEELLLEEEEELL 1dcA PSALTQPPSASGSLGQSVTISCTGTSSNVgGYNYVSWYQQHAGKAPKVIIYEVNKRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYCSSYEGSDNFVFGTGTKVTVLG      ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1dcB PSALTQPPSASGSLGQSVTISCTGTSSNVgGYNYVSWYQQHAGKAPKVIIYEVNKRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYCSSYEGSDNFVFGTGTKVTVLG DSSP LLEELLLLLLLEELLLEEEEEEELLLLLLlLLLLEEEEEELLLLLEEEEELLLLLLLLLLLLLEEEEELLLEEEEEEELLLLLLLEEEEEEEELLLLLEEEELLLEELEEL

Structural alignment by DaliLite

(2) Cluster 58 (From residue 2 to residue 109): coils of one turn

				Z-Score: 20.4 AR: 106 RMSD: 1.5A SI: 97%
Left-handed (1jvk A)	Right-handed (1jvk B)		DaliLite result

***** 1jvA --0000R000000RG0000001RR00O0000RO00000000RG0000300RR00000RG0QBG000000RG000000R00QABRG000000000ABR00000R000-- Res  TALTQPASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEADYYCSSYDGSSTSVVFGGGTKLT 1jvB --G000R000000RG0000001OQABG0RR0RR00000000RG0000001RR00000R00QBG000000RG000000R00QABGG00000000QBBRG0000R000--                            *****

5-tile code sequences

DSSP LLLLLLLEELLLLLLEEEEEEELL.LLLLllLLLEEEEEELLLLLLEEEELLLLLLLLLLLLLEEEEEELLEEEEEEELLLHHHLEEEEEEELLLLLLLLEELLLEEEL 1jvA TALTQPASVSGSPGQSITVSCTGV.SSIVgsYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEADYYCSSYDGSSTSVVFGGGTKLT      |||||||||||||||||||||||| |     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1jvB TALTQPASVSGSPGQSITVSCTGVsSIVG.sYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEADYYCSSYDGSSTSVVFGGGTKLT DSSP LLLLLLLEELLLLLLLEEEEEELLlLLLL.lLLLEEEEEELLLLLLEEEELLLLLLLLLLLLLEEEEEELLEEEEEELLLLHHHLEEEEEEEEELLLLEEEELLLEEEL

Structural alignment by DaliLite

(3) Cluster 29: coils of one turn

				Z-Score: 8.8 AR: 53 RMSD: 0.8A SI: 100%
Left-handed (1k50 A)	Right-handed (1k50 B)		DaliLite result

******* 1k5A --000000000QBR0000000000QAAAAAAAAAAAAAAAAB000000000RRRRG00000-- Res  EEVTIKANLIFANGSTQTAEFKGTFEKATSEAYAYADTLKKDNGEWTADVADKGYTLNIKFAG 1k5B --000000000QBR0000000000QAAAAAAAAAAAAAAAB00000000R30000000000--                                                       *******

5-tile code sequences

DSSP LLEEEEEEEELLLLLEEEEEEEELHHHHHHHHHHHHHHLHHHHLLEEEEEEHHhleeeeeell 1k5A EEVTIKANLIFANGSTQTAEFKGTFEKATSEAYAYADTLKKDNGEWTADVADKgytlnikfag      ||||||||||||||||||||||||||||||||||||||||||||||||||||| 1k5B EEVTIKANLIFANGSTQTAEFKGTFEKATSEAYAYADTLKKDNGEWTADVADKgytlnikfag DSSP LLEEEEEEEELLLLLEEEEEEEELHHHHHHHHHHHHHHLHHHHLLLLLLLLLLllllllllll

Structural alignment by DaliLite

[The DSSP code]

• H = alpha helix
• B = residue in isolated beta-bridge
• E = extended strand, participates in beta ladder
• G = 3-helix (3/10 helix)
• I = 5 helix (pi helix)
• T = hydrogen bonded turn
• S = bend
• L = no assigned structure

[The 5-tile code]

• 0 = DDDDD    (extended strand, small blue spheres)
• 1 = DDDDU
• 2 = DDDUD
• 3 = DDDUU
• 8 = DUDDD
• 9 = DUDDU
• A = DUDUD    (helix, large red spheres)
• B = DUDUU    (C-cap, large orange spheres)
• G = UDDDD
• H = UDDDU
• I = UDDUD
• J = UDDUU
• O = UUDDD
• P = UUDDU
• Q = UUDUD    (N-cap, large orange spheres)
• R = UUDUU    (turn, large yellow spheres)