[Frequency distribution table for the variable regions of length 1]



This is a frequency distribution table for the variable regions of length 1 which occur in the158 pairs with sequence identity 100% and RMSD ≥ 6A.

The second column shows the frequency distribution of 5-tile code pairs occurred in the region.
For each pair, the frequency distribution of amino-acid occurrence is also shown in the table.

Note that methionine (M) and tryptophan (W) are observed only two times respectively.



Frequency distribution table for the variable regions of length 1 occured in the database (158 pairs with sequence identity 100% and RMSD ≥ 6A)


5-tile code pair Num of occur.
Frequency distribution of Amino acid occurrence
code1 : code2
G
D
K
E
N
L
V
T
S
A
I
P
Q
Y
R
F
C
H
M
W

All
471
(100.0%)
43
 (9.1)
38
(8.1)
34
(7.2)
33
 (7.0)
32
(6.8)
32
(6.8)
31
 (6.6)
30
(6.4)
27
(5.7)
26
 (5.5)
21
(4.5)
21
(4.5)
20
 (4.2)
20
(4.2)
19
(4.0)
17
 (3.6)
12
(2.5)
11
(2.3)
2
 (0.4)
2
(0.4)





















jpg image
0 : R
137

(29.1%)
20 13 8 6 10 8 14 11 6 2 8 5 4 2 7 4 4 4 1 0





















jpg image
0 : G
78

(16.6%)
5 3 8 3 4 5 8 5 8 4 2 0 4 5 2 4 5 3 0 0





















jpg image
BG
36

(7.6%)
1 5 3 1 3 2 0 2 6 0 1 0 1 1 3 5 0 0 0 2





















jpg image
A : B
23

(4.9%)
0 2 2 3 2 2 0 1 1 3 1 1 2 1 1 0 1 0 0 0





















jpg image
0 : O
18

(3.8%)
2 3 2 0 0 0 1 0 1 1 2 0 1 2 0 0 0 2 1 0





















jpg image
O : R
17

(3.6%)
4 1 0 2 1 1 1 1 0 1 2 2 1 0 0 0 0 0 0 0





















jpg image
0 : 1
16

(3.4%)
2 1 0 2 1 0 0 0 2 2 0 2 2 2 0 0 0 0 0 0





















jpg image
A : H
16

(3.4%)
1 0 2 3 0 3 2 0 1 3 0 0 1 0 0 0 0 0 0 0





















jpg image
0 : 3
13

(2.8%)
0 2 1 0 2 2 0 1 0 0 0 1 2 2 0 0 0 0 0 0





















jpg image
0 : B
11

(2.3%)
0 0 1 0 2 0 1 1 0 2 0 0 0 2 1 0 1 0 0 0





















jpg image
A : Q
11

(2.3%)
2 1 1 1 1 1 0 1 0 0 0 1 0 0 1 0 0 1 0 0





















G : R 9
(1.9%)
1 2 1 3 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0
3 : R 8
(1.7%)
2 0 2 0 0 1 0 0 0 0 0 2 0 0 0 0 0 1 0 0
1 : Q 7
(1.5%)
0 1 0 1 0 1 0 0 0 0 1 0 1 0 2 0 0 0 0 0
B : J 6
(1.3%)
0 0 0 0 2 1 0 0 0 0 0 0 1 1 0 1 0 0 0 0
P : Q 6
(1.3%)
0 0 0 0 0 1 1 1 0 2 0 1 0 0 0 0 0 0 0 0
8 : B 5
(1.1%)
0 0 1 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
A : I 5
(1.1%)
0 0 0 2 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0
B : R 5
(1.1%)
2 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0
A : G 4
(0.8%)
0 1 0 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0





















Q : R 4
(0.8%)
1 0 0 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0
1 : A 3
(0.6%)
0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0
1 : R 3
(0.6%)
0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
9 : A 3
(0.6%)
0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0
0 : A 2
(0.4%)
0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0
0 : Q 2
(0.4%)
0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0
1 : H 2
(0.4%)
0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
2 : Q 2
(0.4%)
0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
9 : B 2
(0.4%)
0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0
G : J 2
(0.4%)
0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0





















G : O 2
(0.4%)
0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
0 : 2 1
(0.2%)
0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
1 : P 1
(0.2%)
0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
2 : 3 1
(0.2%)
0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
3 : B 1
(0.2%)
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
8 : A 1
(0.2%)
0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
8 : J 1
(0.2%)
0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
8 : R 1
(0.2%)
0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
9 : H 1
(0.2%)
0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
B : H 1
(0.2%)
0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0





















H : J 1
(0.2%)
0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
H : Q 1
(0.2%)
0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
J : G 1
(0.2%)
0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
O : Q 1
(0.2%)
0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0

























[The 5-tile code]
  • 0 = DDDDD    (extended strand, small blue spheres)
  • 1 = DDDDU
  • 2 = DDDUD
  • 3 = DDDUU
  • 8 = DUDDD
  • 9 = DUDDU
  • A = DUDUD    (helix, large red spheres)
  • B = DUDUU    (C-cap, large yellow spheres)
  • G = UDDDD
  • H = UDDDU
  • I = UDDUD
  • J = UDDUU
  • O = UUDDD
  • P = UUDDU
  • Q = UUDUD    (N-cap, large yellow spheres)
  • R = UUDUU    (turn, large yellow spheres)