INPUT SEQUENCE (A) : data/2HA9.code
INPUT SEQUENCE (B) : data/target_ASTRAL.code
SUBSEQUENCE OPTION : Subsequence comparison (|compare window|/|the shorter seq.| = 1.10)
EXEC OPTION : [Length only] Hirschberg's algorithm
RATIO TABLE : range | frequency
RATIO TABLE : --------------|--------------
RATIO RABLE : [0.9, 1.0] | 0
RATIO TABLE : [0.8, 0.9) | 0
RATIO TABLE : [0.7, 0.8) | 10
RATIO TABLE : [0.6, 0.7) | 1810
RATIO TABLE : [0.5, 0.6) | 1896
RATIO TABLE : [0.4, 0.5) | 5265
RATIO TABLE : [0.3, 0.4) | 12967
RATIO TABLE : [0.2, 0.3) | 40362
RATIO TABLE : [0.1, 0.2) | 143489
RATIO TABLE : [0.0, 0.1) | 166164
RATIO : lcs/trimmed_seq_a = 0.718 (= 282/ 393), lcs/trimmed_seq_b = 0.653 (= 282/ 432)
SEQ A : name = ./PDBdata/2HA9.pdb c1
SEQ A : residue = ADIRQVTETIAIEEQNFDIRTITGISLLDCIDPDINRAAEKIYQKITTKAANLVAVGDEIAAELGIPIVNKRVSVTPISLIGAATDATDYVVLAKALDKAAKEIGVDFIGGFSALVQKGYQKGDEILINSIPRALAETDKVCSSVNIGSTKSGINTAVADGRIIKETANLSDGVAKLVVFANAVEDNPFAAFHGVGEADVIINVGVSGPGVVKRALEKVRGQSFDVVAETVKKTAFKITRIGQLVGQASERLGVEFGIVDLSLAPTDSVARVLEEGLETVGTHGTTAALALLNDQVKKGGVACNDEGIAAVQNGSLNLEKLEATAICSDIAIPEDTPAETIAAIADEAAIGVINKTTAVRIIPKGKEGDIEFTAPVKVNGASSVDFISRGGQIPAPI
SEQ A : code = --QAAAAAABBJOG0000OR000000RQAB00QGQAAAAAAAAAAAAAABQ3QAAAAAAAAAABR000R0000000OQAAAAABGR0R0RQAAAAAAAAAAAAB00R0010RG0R1QB00001HAAAAABAAAAAA8G00000000000QB0000QAAABQAAAAAAAI80PIQABG0000R00QB00ORG0000RG0R000000001QAAAAAAAAAG0R00QAAAAAAAAAAAAAAAAAAAAAAAAAAABRG00000000000PJ0QAAAABR30R01BG0RQAAAAAAAAAAAAAABQB0O229AAAAHBRRG0QAAAABRR00000000QB00QAAAAAAAAAAAAAAB0000000000000R0000O3000300RO0RQAAAAB000000--
SEQ A : lcs = --QAAAAAAB---G0000--00000--Q-B0-Q--AAAAAAAAAAAA--BQ-QAAAAAAAAAAB-000-0000000-QAAAAABGR0R0RQAAAAAAAAAAAAB00-00-0--0R-QB000---AAAAA-AAAAAA--00000------QB----QAAABQAAAAAAA------AB-000-R00--00-RG000-R-0R00000000-QAAAAAAAAA-0R00QAAAAAAAAAAAAAAAAAAAA-------BR--------0000--0QAAAAB--0R0-BG0RQAAAAAAAAAAAA--B--0----AAAA-------AAAA-R-------------QAAAAAAAAAAAAAAB0000000000000-0000--000-00--0-QAAAAB0000----
SEQ B : name = ./pdbstyle-1.71/ee/d1eexa_.ent c1
SEQ B : residue = MRSKRFEALAKRPVNQDGFVKEWIEEGFIAMESPNDPKPSIKIVNGAVTELDGKPVSDFDLIDHFIARYGINLNRAEEVMAMDSVKLANMLCDPNVKRSEIVPLTTAMTPAKIVEVVSHMNVVEMMMAMQKMRARRTPSQQAHVTNVKDNPVQIAADAAEGAWRGFDEQETTVAVARYAPFNAIALLVGSQVGRPGVLTQCSLEEATELKLGMLGHTCYAETISVYGTEPVFTDGDDTPWSKGFLASSYASRGLKMRFTSGSGSEVQMGYAEGKSMLYLEARCIYITKAAGVQGLQNGSVSCIGVPSAVPSGIRAVLAENLICSSLDLECASSNDQTFTHSDMRRTARLLMQFLPGTDFISSGYSAVPNYDNMFAGSNEDAEDFDDYNVIQRDLKVDGGLRPVREEDVIAIRNKAARALQAVFAGMGLPPITDEEVEAATYAHGSKDMPERNIVEDIKFAQEIINKNRNGLEVVKALAQGGFTDVAQDMLNIQKAKLTGDYLHTSAIIVGDGQVLSAVNDVNDYAGPATGYRLQGERWEEIKNIPGALDPN
SEQ B : code = ---------------------------------------------------------------------------------------------------------------------ABG0QAAAAAAAAABGRGRG000000000QBR0QAAAAAAAAAAAAB00R000000R0QABQAAAAAAAAAAAAAB00B00000000QAAAAAAAAB0RGR001RR00000QAAAAABRG0QAAAAAAAAAAAABR000000000RQAAAB0GRRR00QAAAAAAAAAAAAABR0R0001RR0QBQAGAABG0RQAAAAAAAAAAAAABR000R00RGG000RGQAAAAAAAAAAAAB00R0R0R0R0RG0QAB0QBR00R00QABQAAAAAAAAABR00RRG0000QAAAAAAAAAAAAAAAAAAAABR00000QAAAAAABB0R0QABG000RQAAAAAAAAAAAABR00QAAAAAAAAAGRGQAAAAAAAAAAAAA9GRQABG0R00000RR0000QBAB0000000RG000000QAAAAABG00R300--
SEQ B : lcs = -------------------------------------------------------------------------------------------------------------------------QAAAAAA---B----G000000000QB-0QAAAAAAAAAAAAB-----------Q--QAAAAAAAAAA---B00-00000000QAAAAA---B--GR0--R-0-----------R--QAAAAAAAAAAAAB-000000---RQ---B0----00-AAAAAAAAAAA----0-000---0QBQA-AAB---QAAAAAAAA-----B-000R00---00-RG--------------00-0R0R0-0--0---0---00-00QA--AAAAAAAA---0-R--00--QAAAAAAAAAAAAAAAAAAAABR00000QAAAA--B-0R0--BG0--RQAAAAAAAAAAAAB-0--AAAAAAAA--R-QAAAAAAAAAAAAA----AB-0-00000--0000----0000000--000000QAAAA-B-00--00--
// [NOTE]: A trimmed sequence is the sequence obtained by removing residues of
// irregular 5-tile codes, such as '-', where regular 5-tile codes are
// {0, A, R, Q, B, G, 1, O, H, 3, J, 8, P, 9, 2, I}. Irregular 5-tile
// codes are ommited during the LCS computation and LCSs consist of
// regular 5-tile codes only.