INPUT SEQUENCE (A) : data/2HA9.code
INPUT SEQUENCE (B) : data/target_ASTRAL.code
SUBSEQUENCE OPTION : Subsequence comparison (|compare window|/|the shorter seq.| = 1.20)
EXEC OPTION : [Length only] Hirschberg's algorithm
RATIO TABLE : range | frequency
RATIO TABLE : --------------|--------------
RATIO RABLE : [0.9, 1.0] | 0
RATIO TABLE : [0.8, 0.9) | 0
RATIO TABLE : [0.7, 0.8) | 91
RATIO TABLE : [0.6, 0.7) | 1096
RATIO TABLE : [0.5, 0.6) | 1457
RATIO TABLE : [0.4, 0.5) | 3335
RATIO TABLE : [0.3, 0.4) | 7564
RATIO TABLE : [0.2, 0.3) | 22667
RATIO TABLE : [0.1, 0.2) | 72089
RATIO TABLE : [0.0, 0.1) | 72521
RATIO : lcs/trimmed_seq_a = 0.735 (= 289/ 393), lcs/trimmed_seq_b = 0.614 (= 289/ 471)
SEQ A : name = ./PDBdata/2HA9.pdb c1
SEQ A : residue = ADIRQVTETIAIEEQNFDIRTITGISLLDCIDPDINRAAEKIYQKITTKAANLVAVGDEIAAELGIPIVNKRVSVTPISLIGAATDATDYVVLAKALDKAAKEIGVDFIGGFSALVQKGYQKGDEILINSIPRALAETDKVCSSVNIGSTKSGINTAVADGRIIKETANLSDGVAKLVVFANAVEDNPFAAFHGVGEADVIINVGVSGPGVVKRALEKVRGQSFDVVAETVKKTAFKITRIGQLVGQASERLGVEFGIVDLSLAPTDSVARVLEEGLETVGTHGTTAALALLNDQVKKGGVACNDEGIAAVQNGSLNLEKLEATAICSDIAIPEDTPAETIAAIADEAAIGVINKTTAVRIIPKGKEGDIEFTAPVKVNGASSVDFISRGGQIPAPI
SEQ A : code = --QAAAAAABBJOG0000OR000000RQAB00QGQAAAAAAAAAAAAAABQ3QAAAAAAAAAABR000R0000000OQAAAAABGR0R0RQAAAAAAAAAAAAB00R0010RG0R1QB00001HAAAAABAAAAAA8G00000000000QB0000QAAABQAAAAAAAI80PIQABG0000R00QB00ORG0000RG0R000000001QAAAAAAAAAG0R00QAAAAAAAAAAAAAAAAAAAAAAAAAAABRG00000000000PJ0QAAAABR30R01BG0RQAAAAAAAAAAAAAABQB0O229AAAAHBRRG0QAAAABRR00000000QB00QAAAAAAAAAAAAAAB0000000000000R0000O3000300RO0RQAAAAB000000--
SEQ A : lcs = ---AAAAAAB-------0-R00000-RQAB----QAAAAAAAAAAAAAA----AAAAAAAAAA---------------AAAA---------AAAAAAAAAAAA-00R00-0-------00001-AAAAA-AAAAAA--00000000000--0000QAAA--AAAAAAA--0--QABG0000-00--00---0000R-0R00000000-QAAAAAA---G0R00QAAAAAAAAAAAAAAAAAAAAAAAAAA-BRG00000000000--0QAAAABR------G0RQAAAAAAAAAAAAAAB--0----AAAA-BRRG0QAAAAB--00000000--00QAAAAAAAAAAAA--B0000000000000R0000--000-00R-0-QA---B000000--
SEQ B : name = ./pdbstyle-1.71/hk/d1hk8a_.ent c1
SEQ B : residue = DSRVFPTQRDLMAGIVSKHIAKNMVPSFIMKAHESGIIHVHDIDYSPALPFTNCCLVDLKGMLENGFKLGNAQIETPKSIGVATAIMAQITAQVASHQYGGTTFANVDKVLSPYVKRTYAKHIEDAEKWQIADALNYAQSKTEKDVYDAFQAYEYEVNTLFSSNGQTPFVTITFGTGTDWTERMIQKAILKNRIKGLGRDGITPIFPKLVMFVEEGVNLYKDDPNYDIKQLALECASKRMYPDIISAKNNKAITGSSVPVSPMGCRSFLSVWKDSTGNEILDGRNNLGVVTLNLPRIALDSYIGTQFNEQKFVELFNERMDLCFEALMCRISSLKGVKATVAPILYQEGAFGVRLKPDDDIIELFKNGRSSVSLGYIGIHELNILVGRDIGREILTKMNAHLKQWTERTGFAFSLYSTPAENLCYRFCKLDTEKYGSVKDVTDKGWYTNSFHVSVEENITPFEKISREAPYHFIATGGHISYVELPDMKNNLKGLEAVWDYAAQHLDYFGVNMPVDKCFTCGSTHEMTPTENGFVCSICGETDPKKMNTIRRTCAYLGNPN
SEQ B : code = ----------------------------------------------------------------------------------------AAAAAAAAB0RG00000RQAAABQAAAAAAAAAAAAAAAA0R0QB1AAAAAAAAAAAAAAAAAAAAAAAAGG00QBRG00O000001RG0GQAAAAAAAAAAAAAAB000QBR000RGO00000000RG100QBGQBQAAAAAAAAAAAB0RGO0000QAAAAAABR0RG0000000000000000QBR0000GR000R00000RQAAAAAABG00RG00QAAAAAAAAAAAAAAAAAAAAAAAABGR00QAB0QAG0001QBRG000QBG0QAAABGR1R000000000QAAAAAABRG0RQAAAAAAAAAAAAAAAAB0RG00000R0RRR1AAAAAAAAAAB000000RGQABRG0000R000QBG000QAAAAAAHAAAAB1BQB0000000000RQAGQAAAAAAAAAAAB00000000000000QB000RG00000QB0000R000000QABG0000RR000000--
SEQ B : lcs = ------------------------------------------------------------------------------------------AAAAAAB0R-00000RQA--BQAAAAAAAAAAAAAAAA------AAAAAAAAAAAAAAAAAAAAAAAA--00--R-00-000001-----AAAAAAAAAAA----000---000---00000000---0------QAAAAAAAAAA--0-------QA-----B---G----000000000000--R0----R000-00000-QAAAAAA-G0-R-00QAAAAAAAAAAAAAAAAAAAAAAAA------A---A------BRG000-------------000000000QAAAA--BRG0RQAAAAAAAAAAAAAA--B0-------------AAAA------B------R----R-----------G0--QAAAA-----------B0000000000-QA--AAAAAAAAAAAB0000000000000------R-00000--0000R0-----QAB-------000000--
// [NOTE]: A trimmed sequence is the sequence obtained by removing residues of
// irregular 5-tile codes, such as '-', where regular 5-tile codes are
// {0, A, R, Q, B, G, 1, O, H, 3, J, 8, P, 9, 2, I}. Irregular 5-tile
// codes are ommited during the LCS computation and LCSs consist of
// regular 5-tile codes only.