INPUT SEQUENCE (A) : data/2HA9.code
INPUT SEQUENCE (B) : data/target_ASTRAL.code
SUBSEQUENCE OPTION : Whole sequence comparison
EXEC OPTION : [Length only] Naive Dynamic Programing
RATIO TABLE : range | frequency
RATIO TABLE : --------------|--------------
RATIO RABLE : [0.9, 1.0] | 4
RATIO TABLE : [0.8, 0.9) | 21
RATIO TABLE : [0.7, 0.8) | 132
RATIO TABLE : [0.6, 0.7) | 511
RATIO TABLE : [0.5, 0.6) | 1308
RATIO TABLE : [0.4, 0.5) | 2000
RATIO TABLE : [0.3, 0.4) | 2705
RATIO TABLE : [0.2, 0.3) | 3857
RATIO TABLE : [0.1, 0.2) | 1946
RATIO TABLE : [0.0, 0.1) | 521
RATIO : lcs/trimmed_seq_a = 0.919 (= 361/ 393), lcs/trimmed_seq_b = 0.288 (= 361/ 1252)
SEQ A : name = ./PDBdata/2HA9.pdb c1
SEQ A : residue = ADIRQVTETIAIEEQNFDIRTITGISLLDCIDPDINRAAEKIYQKITTKAANLVAVGDEIAAELGIPIVNKRVSVTPISLIGAATDATDYVVLAKALDKAAKEIGVDFIGGFSALVQKGYQKGDEILINSIPRALAETDKVCSSVNIGSTKSGINTAVADGRIIKETANLSDGVAKLVVFANAVEDNPFAAFHGVGEADVIINVGVSGPGVVKRALEKVRGQSFDVVAETVKKTAFKITRIGQLVGQASERLGVEFGIVDLSLAPTDSVARVLEEGLETVGTHGTTAALALLNDQVKKGGVACNDEGIAAVQNGSLNLEKLEATAICSDIAIPEDTPAETIAAIADEAAIGVINKTTAVRIIPKGKEGDIEFTAPVKVNGASSVDFISRGGQIPAPI
SEQ A : code = --QAAAAAABBJOG0000OR000000RQAB00QGQAAAAAAAAAAAAAABQ3QAAAAAAAAAABR000R0000000OQAAAAABGR0R0RQAAAAAAAAAAAAB00R0010RG0R1QB00001HAAAAABAAAAAA8G00000000000QB0000QAAABQAAAAAAAI80PIQABG0000R00QB00ORG0000RG0R000000001QAAAAAAAAAG0R00QAAAAAAAAAAAAAAAAAAAAAAAAAAABRG00000000000PJ0QAAAABR30R01BG0RQAAAAAAAAAAAAAABQB0O229AAAAHBRRG0QAAAABRR00000000QB00QAAAAAAAAAAAAAAB0000000000000R0000O3000300RO0RQAAAAB000000--
SEQ A : lcs = --QAAAAAABB--G0000-R000000RQAB00QGQAAAAAAAAAAAAAABQ-QAAAAAAAAAABR000R0000000OQAAAAABGR0R0RQAAAAAAAAAAAAB00R00-0-G0R-QB0000--AAAAABAAAAAA-G00000000000QB0000QAAABQAAAAAAA--0--QABG0000R00QB00--G0000RG0R0000000--QAAAAAAAAAG0R00QAAAAAAAAAAAAAAAAAAAAAAAAAA-BRG00000000000--0QAAAABR-0R0-BG0RQAAAAAAAAAAAAAABQB0----AAAA-BRRG0QAAAABRR00000000QB00QAAAAAAAAAAAAAAB0000000000000R0000--000-00R-0RQAAAAB000000--
SEQ B : name = ./pdbstyle-1.71/mu/d1muka_.ent c1
SEQ B : residue = SSMILTQFGPFIESISGITDQSNDVFEDAAKAFSMFTRSDVYKALDEIPFSDDAMLPIPPTIYTKPSHDSYYYIDALNRVRRKTYQGPDDVYVPNCSIVELLEPHETLTSYGRLSEAIENRAKDGDSQARIATTYGRIAESQARQIKAPLEKFVLALLVAEAGGSLYDPVLQKYDEIPDLSHNCPLWCFREICRHISGPLPDRAPYLYLSAGVFWLMSPRMTSAIPPLLSDLVNLAILQQTAGLDPSLVKLGVQICLHAAASSSYSWFILKTKSIFPQNTLHSMYESLEGGYCPNLEWLEPRSDYKFMYMGVMPLSAKYARSAPSNDKKARELGEKYGLSSVVGELRKRTKTYVKHDFASVRYIRDAMACTSGIFLVRTPTETVLQEYTQSPEIKVPIPQKDWTGPIGEIRILKDTTSSIARYLYRTWYLAAARMAAQPRTWDPLFQAIMRSQYVTARGGSGAALRESLYAINVSLPDFKGLPVKAATKIFQAAQLANLPFSHTSVAILADTSMGLRNQVQRRPRSIMPLNVPQQQVSAPHTLTADYINYHMNLSPTSGSAVIEKVIPLGVYASSPPNQSINIDISACDASITWDFFLSVIMAAIHEGVASSSIGKPFMGVPASIVNDESVVGVRAARPISGMQNMIQHLSKLYKRGFSYRVNDSFSPGNDFTHMTTTFPSGSTATSTEHTANNSTMMETFLTVWGPEHTDDPDVLRLMKSLTIQRNYVCQGDDGLMIIDGTTAGKVNSETIQNDLELISKYGEEFGWKYDIAYDGTAEYLKLYFIFGCRIPNLSRHPIVGKERANSSAEEPWPAILDQIMGVFFNGVHDGLQWQRWIRYSWALCCAFSRQRTMIGESVGYLQYPMWSFVYWGLPLVKAFGSDPWIFSWYMPTGDLGMYSWISLIRPLMTRWMVANGYVTDRCSTVFGNADYRRCFNELKLYQGYYMAQLPRNPKEVREQFTQALSDYLMQNPELKSRVLRGRSEWEKYGAGIIHNPPSLFDVPHKWYQGAQEAAIATREELAEMDETLMRARRHSYSSFSKLLEAYLLVKWRMCEAREPSVDLRLPLCAGIDPLNSDPFLKMVSVGPMLQSTRKYFAQTLFMAKTVSGLDVNAIDSALLRLRTLGADKKALTAQLLMVGLQESEADALAGKIMLQDVNTVQLARVVNLAVPDTWMSLDFDSMFKHHVKLLPKDGRHLNTDIPPRMGWLRAILRFLGAGMVMTATGVAVDIYLEDIHGGGRSLGQRFMTWMRQEGR
SEQ B : code = --AAAA0RQAAAAAABRR0000QAAAAAAAAAAABG0QAAAAAAAABGR00QABG0000QAAGG000RAAB0000QBR0000000R0QBRGG00R001QABG000RQBQBG0000QAAAAAAAB00QAAAAAAAAAAAAAAAABRGR00QAAAAAAAAAAAAB00000QABRG00R000QAB0QAAAAAAAAAAAAB0RGRGRGR0000R000000R0QBG0QAAAAAAAAAAAAAAAAA0RR0OQAAAAAAAAAAAAAABGR0QAAAAAA9QBQAAAB0QAG0RRG0O00000000000RQABR00000000000QAB00RG00RQAAAAAAAAABRGQAAAAAAAAAAABGRG00QAAAAAAAAAAABG0R0R0000QAAAAAGA1G0000RR0000QABG000R0RG0000QBGRGQAAAAAAAAAAAAAAAABGQAABGQAAAAAAAAABR0RG00RQAAAAAAAAABR0000RR000RG0QBGQAAAAAABQ0G0QAABQAAAB00000000000RG000000000QAAAAABQAAAAAAAAAAB000000R000GQABRRQAAAAAABG1RG00000000RQAAAB0QB00QAAAAAAAAHABGAAB00G00RR00000000RRG0RG0000000QAAAAAAAAAAAAAB00000000QBG0R0000000R000QBGQHOAAAAAAAAAAAAAAAA00QAAAG0R0QAAAAAAABG0QB00G0000RG00000000QB0000QAAAAAAAAAAAAAAAB0R00000000RG000RR0000RRG0000QAAG0QBG000R0R000000PAAAAAAAAAAAAAAAB00RQAAAAAAAAAAAAAARG0000R0RG0000000QAAAAAB0000R00RR000RRG0QB0000QAAAAAAAAB8QAAAAAAAAABRR00RG00R0R0RGRQAAAAAABRQAAAAAAABG0RG012QAAAAAAAAAAAABRGQAAAAAAAAAAAAAAG000QB0QB000QAAAAAAAAAAAAABG000QAAAAAAAAAAAAAABG000000QAAAAAABG0000000000R00QBG0R00RBGQAB0AAAAAAAAB000RG0QAAAAAABGR0R000QBG0QAAAAAAAAAAAABR00QAAAAAAAAAB000QAAAAAAAAAAAB0R001AAAAAABR0000QAAQBGRQAAABG01G0RG0QG000QABG00QABQAAAAAAAAAAAAAAABG000000000000QR0QAAAAAAAAAAAA80--
SEQ B : lcs = --------QAAAAAAB------------------BG0---------------------------000R---0000---00--------------R---QAB-00--Q---G----QA---------------------------------AAAAAAAAAAAA-------AB--------Q---QAAAAAAAAAA--B-R-------000R000000-0--------------------------OQAAAAA---------BGR0--------------------R--------------0RQA-------------------------------------------------------AAAAAAAAAAAB-0-0R000-------G---0---R-----Q-B--------0000------AAAAA-----------B----------AAAAAA----G00-------------0000--000--0------------0--Q--B-----------------------0000QAAA--BQAAAAAAA-------------0-QAB----------G-------0000R--------00Q--------------B00G--------0000R-G0R-0000000QAAAAAAAAA---------------G--------0R00-Q-----AAAAAAAAAAAAAAAA---AAA-----AAAAAAAB-----------RG00000000--0000QAAAA-----------B-R0-------R-0---------------------BG------------------------------0RQAAAAAAAAAAAAAA-----------------------B----------------QB0--------------------AAAABRR---G-----0---QAAAA--BR-----------R-0----------------------------------000--0--000Q-------------B-00-QAAAAAAAAAAAAAAB-000000---------0000000---R00---0-00------0---------000R-0---------R-----Q--------------------------------------------------------------------------------------------------------------AAAAB-000000--------------------------
// [NOTE]: A trimmed sequence is the sequence obtained by removing residues of
// irregular 5-tile codes, such as '-', where regular 5-tile codes are
// {0, A, R, Q, B, G, 1, O, H, 3, J, 8, P, 9, 2, I}. Irregular 5-tile
// codes are ommited during the LCS computation and LCSs consist of
// regular 5-tile codes only.