INPUT SEQUENCE (A) : data/2HA9.code INPUT SEQUENCE (B) : data/target_ASTRAL173.code SUBSEQUENCE OPTION : Subsequence comparison (|compare window|/|the shorter seq.| = 1.20) SORT POLICY : Whole structure search of the key protein EXEC OPTION : [Length only] Hirschberg's algorithm RATIO TABLE : range | frequency RATIO TABLE : --------------|-------------- RATIO RABLE : [0.9, 1.0] | 0 RATIO TABLE : [0.8, 0.9) | 0 RATIO TABLE : [0.7, 0.8) | 93 RATIO TABLE : [0.6, 0.7) | 1188 RATIO TABLE : [0.5, 0.6) | 1683 RATIO TABLE : [0.4, 0.5) | 3914 RATIO TABLE : [0.3, 0.4) | 8857 RATIO TABLE : [0.2, 0.3) | 27240 RATIO TABLE : [0.1, 0.2) | 85550 RATIO TABLE : [0.0, 0.1) | 86283 RATIO : lcs/trimmed_seq_a = 0.735 (= 289/ 393), lcs/trimmed_seq_b = 0.614 (= 289/ 471) SEQ A : name = ./PDBdata/2HA9.pdb c1 SEQ A : residue = ADIRQVTETIAIEEQNFDIRTITGISLLDCIDPDINRAAEKIYQKITTKAANLVAVGDEIAAELGIPIVNKRVSVTPISLIGAATDATDYVVLAKALDKAAKEIGVDFIGGFSALVQKGYQKGDEILINSIPRALAETDKVCSSVNIGSTKSGINTAVADGRIIKETANLSDGVAKLVVFANAVEDNPFAAFHGVGEADVIINVGVSGPGVVKRALEKVRGQSFDVVAETVKKTAFKITRIGQLVGQASERLGVEFGIVDLSLAPTDSVARVLEEGLETVGTHGTTAALALLNDQVKKGGVACNDEGIAAVQNGSLNLEKLEATAICSDIAIPEDTPAETIAAIADEAAIGVINKTTAVRIIPKGKEGDIEFTAPVKVNGASSVDFISRGGQIPAPI SEQ A : code = --QAAAAAABBJOG0000OR000000RQAB00QGQAAAAAAAAAAAAAABQ3QAAAAAAAAAABR000R0000000OQAAAAABGR0R0RQAAAAAAAAAAAAB00R0010RG0R1QB00001HAAAAABAAAAAA8G00000000000QB0000QAAABQAAAAAAAI80PIQABG0000R00QB00ORG0000RG0R000000001QAAAAAAAAAG0R00QAAAAAAAAAAAAAAAAAAAAAAAAAAABRG00000000000PJ0QAAAABR30R01BG0RQAAAAAAAAAAAAAABQB0O229AAAAHBRRG0QAAAABRR00000000QB00QAAAAAAAAAAAAAAB0000000000000R0000O3000300RO0RQAAAAB000000-- SEQ A : lcs = ---AAAAAAB-------0-R00000-RQAB----QAAAAAAAAAAAAAA----AAAAAAAAAA---------------AAAA---------AAAAAAAAAAAA-00R00-0-------00001-AAAAA-AAAAAA--00000000000--0000QAAA--AAAAAAA--0--QABG0000-00--00---0000R-0R00000000-QAAAAAA---G0R00QAAAAAAAAAAAAAAAAAAAAAAAAAA-BRG00000000000--0QAAAABR------G0RQAAAAAAAAAAAAAAB--0----AAAA-BRRG0QAAAAB--00000000--00QAAAAAAAAAAAA--B0000000000000R0000--000-00R-0-QA---B000000-- SEQ B : name = ./pdbstyle-1.73/hk/d1hk8a_.ent c1 SEQ B : residue = DSRVFPTQRDLMAGIVSKHIAKNMVPSFIMKAHESGIIHVHDIDYSPALPFTNCCLVDLKGMLENGFKLGNAQIETPKSIGVATAIMAQITAQVASHQYGGTTFANVDKVLSPYVKRTYAKHIEDAEKWQIADALNYAQSKTEKDVYDAFQAYEYEVNTLFSSNGQTPFVTITFGTGTDWTERMIQKAILKNRIKGLGRDGITPIFPKLVMFVEEGVNLYKDDPNYDIKQLALECASKRMYPDIISAKNNKAITGSSVPVSPMGCRSFLSVWKDSTGNEILDGRNNLGVVTLNLPRIALDSYIGTQFNEQKFVELFNERMDLCFEALMCRISSLKGVKATVAPILYQEGAFGVRLKPDDDIIELFKNGRSSVSLGYIGIHELNILVGRDIGREILTKMNAHLKQWTERTGFAFSLYSTPAENLCYRFCKLDTEKYGSVKDVTDKGWYTNSFHVSVEENITPFEKISREAPYHFIATGGHISYVELPDMKNNLKGLEAVWDYAAQHLDYFGVNMPVDKCFTCGSTHEMTPTENGFVCSICGETDPKKMNTIRRTCAYLGNPN SEQ B : code = ----------------------------------------------------------------------------------------AAAAAAAAB0RG00000RQAAABQAAAAAAAAAAAAAAAA0R0QB1AAAAAAAAAAAAAAAAAAAAAAAAGG00QBRG00O000001RG0GQAAAAAAAAAAAAAAB000QBR000RGO00000000RG100QBGQBQAAAAAAAAAAAB0RGO0000QAAAAAABR0RG0000000000000000QBR0000GR000R00000RQAAAAAABG00RG00QAAAAAAAAAAAAAAAAAAAAAAAABGR00QAB0QAG0001QBRG000QBG0QAAABGR1R000000000QAAAAAABRG0RQAAAAAAAAAAAAAAAAB0RG00000R0RRR1AAAAAAAAAAB000000RGQABRG0000R000QBG000QAAAAAAHAAAAB1BQB0000000000RQAGQAAAAAAAAAAAB00000000000000QB000RG00000QB0000R000000QABG0000RR000000-- SEQ B : lcs = ------------------------------------------------------------------------------------------AAAAAAB0R-00000RQA--BQAAAAAAAAAAAAAAAA------AAAAAAAAAAAAAAAAAAAAAAAA--00--R-00-000001-----AAAAAAAAAAA----000---000---00000000---0------QAAAAAAAAAA--0-------QA-----B---G----000000000000--R0----R000-00000-QAAAAAA-G0-R-00QAAAAAAAAAAAAAAAAAAAAAAAA------A---A------BRG000-------------000000000QAAAA--BRG0RQAAAAAAAAAAAAAA--B0-------------AAAA------B------R----R-----------G0--QAAAA-----------B0000000000-QA--AAAAAAAAAAAB0000000000000------R-00000--0000R0-----QAB-------000000-- RATIO : lcs/trimmed_seq_a = 0.733 (= 288/ 393), lcs/trimmed_seq_b = 0.611 (= 288/ 471) SEQ A : name = ./PDBdata/2HA9.pdb c1 SEQ A : residue = ADIRQVTETIAIEEQNFDIRTITGISLLDCIDPDINRAAEKIYQKITTKAANLVAVGDEIAAELGIPIVNKRVSVTPISLIGAATDATDYVVLAKALDKAAKEIGVDFIGGFSALVQKGYQKGDEILINSIPRALAETDKVCSSVNIGSTKSGINTAVADGRIIKETANLSDGVAKLVVFANAVEDNPFAAFHGVGEADVIINVGVSGPGVVKRALEKVRGQSFDVVAETVKKTAFKITRIGQLVGQASERLGVEFGIVDLSLAPTDSVARVLEEGLETVGTHGTTAALALLNDQVKKGGVACNDEGIAAVQNGSLNLEKLEATAICSDIAIPEDTPAETIAAIADEAAIGVINKTTAVRIIPKGKEGDIEFTAPVKVNGASSVDFISRGGQIPAPI SEQ A : code = --QAAAAAABBJOG0000OR000000RQAB00QGQAAAAAAAAAAAAAABQ3QAAAAAAAAAABR000R0000000OQAAAAABGR0R0RQAAAAAAAAAAAAB00R0010RG0R1QB00001HAAAAABAAAAAA8G00000000000QB0000QAAABQAAAAAAAI80PIQABG0000R00QB00ORG0000RG0R000000001QAAAAAAAAAG0R00QAAAAAAAAAAAAAAAAAAAAAAAAAAABRG00000000000PJ0QAAAABR30R01BG0RQAAAAAAAAAAAAAABQB0O229AAAAHBRRG0QAAAABRR00000000QB00QAAAAAAAAAAAAAAB0000000000000R0000O3000300RO0RQAAAAB000000-- SEQ A : lcs = --QAAAAAAB-----000--000000--AB00----AAAAAAAAAAAAABQ3QAAAAAAAAAA--00-R0000000-QAAAA-B-R0-0-QAAAAAAAAA---B00-00-0--0----0000--AAAAA-AAAAAA--00000000000--000-QAAA--AAAAAAA------AB-0000-00--00-RG000-RG0R00000000-QAAAAAAAA--0R00QAAAAAAAAAAAAAAAAAAAAAAAAAAA---0000000000----QAAAABR-0R0-BG0-QAAAAAAAAAAAA--BQB0-----------RG0QAAAA-----000000--00QAAAAAAAAAAA---B0000000000--------O-000-0-RO0-QAAAAB000----- SEQ B : name = ./pdbstyle-1.73/qg/d1qgub_.ent c1 SEQ B : residue = SQTIDKINSCYPLFEQDEYQELFRNKRQLEEAHDAQRVQEVFAWTTTAEYEALNFRREALTVDPAKACQPLGAVLCSLGFANTLPYVHGSQGCVAYFRTYFNRHFKEPIACVSDSMTEDAAVFGGNNNMNLGLQNASALYKPEIIAVSTTCMAEVIGDDLQAFIANAKKDGFVDSSIAVPHAHTPSFIGSHVTGWDNMFEGFAKTFTADYQGQPGKLPKLNLVTGFETYLGNFRVLKRMMEQMAVPCSLLSDPSEVLDTPADGHYRMYSGGTTQQEMKEAPDAIDTLLLQPWQLLKSKKVVQEMWNQPATEVAIPLGLAATDELLMTVSQLSGKPIADALTLERGRLVDMMLDSHTWLHGKKFGLYGDPDFVMGLTRFLLELGCEPTVILSHNANKRWQKAMNKMLDASPYGRDSEVFINCDLWHFRSLMFTRQPDFMIGNSYGKFIQRDTLAKGKAFEVPLIRLGFPLFDRHHLHRQTTWGYEGAMNIVTTLVNAVLEKLDSDTSQLGKTDYSFDLVR SEQ B : code = ----------------------------------------------GQAAAAAAAB000000R0RG001AAAAAAAAABG0R00000000PAAAAAAAAAAAAABRG000000R000QAAAA003QAAAAAAAAAAAA80R0R0000000QAAAABR00QAAAAAAAAABRR00QBG00000000QBG00QAAAAAAAAAAAAAA01QB0R000RRGRG000000000GQAAAAAAAAAAAABR00000000RQAABG00R0RG00RG00000QAAAABQABGR0000QBPAAB1AAAAAB00ABR0RR00000R00QAAAAAAAAAAAAABR0000QAAAAAAAAAAAAAAA1QAA00R00000000QAAAAAAAAAAAABR00RR0000QBG0QAAAAAAAAAAABGQABQB00000RG0QAAAAAAAA0B00R00000QAAAAAAAAAAAB0QAB000000000O01000RQABG0OG0QAAAAAAAAAAAAAAAAAAAAABR00RGRQABR0R-- SEQ B : lcs = -----------------------------------------------QAAAAAA-B000000-0--00-A--------B---------00-AAAAAAAAAAAAAB------------Q------3QAAAAAAAAAA---0-0R0000000QAAAABR00QAAAAAAAAAB--00---00000000---------AAAAAAAAAAA0---0-000-----000000000-QAAAAAAAAAAA-B-00000000R----G00-0RG0-R-00000------------000Q--AA--AAAAA---A---------0R00QAAAAAAAAAA----------AAAAAAAAAAAAAAA--AA00-00000000Q--------AAAABR0-R-0----BG0QAAAAAAAAAAA---ABQB0----RG0Q----AAAA0-00-00000QAAAAAAAAAAAB0---000000000O0-000R-----O-0QAAAA-----------------B-00-------0--- RATIO : lcs/trimmed_seq_a = 0.730 (= 287/ 393), lcs/trimmed_seq_b = 0.609 (= 287/ 471) SEQ A : name = ./PDBdata/2HA9.pdb c1 SEQ A : residue = ADIRQVTETIAIEEQNFDIRTITGISLLDCIDPDINRAAEKIYQKITTKAANLVAVGDEIAAELGIPIVNKRVSVTPISLIGAATDATDYVVLAKALDKAAKEIGVDFIGGFSALVQKGYQKGDEILINSIPRALAETDKVCSSVNIGSTKSGINTAVADGRIIKETANLSDGVAKLVVFANAVEDNPFAAFHGVGEADVIINVGVSGPGVVKRALEKVRGQSFDVVAETVKKTAFKITRIGQLVGQASERLGVEFGIVDLSLAPTDSVARVLEEGLETVGTHGTTAALALLNDQVKKGGVACNDEGIAAVQNGSLNLEKLEATAICSDIAIPEDTPAETIAAIADEAAIGVINKTTAVRIIPKGKEGDIEFTAPVKVNGASSVDFISRGGQIPAPI SEQ A : code = --QAAAAAABBJOG0000OR000000RQAB00QGQAAAAAAAAAAAAAABQ3QAAAAAAAAAABR000R0000000OQAAAAABGR0R0RQAAAAAAAAAAAAB00R0010RG0R1QB00001HAAAAABAAAAAA8G00000000000QB0000QAAABQAAAAAAAI80PIQABG0000R00QB00ORG0000RG0R000000001QAAAAAAAAAG0R00QAAAAAAAAAAAAAAAAAAAAAAAAAAABRG00000000000PJ0QAAAABR30R01BG0RQAAAAAAAAAAAAAABQB0O229AAAAHBRRG0QAAAABRR00000000QB00QAAAAAAAAAAAAAAB0000000000000R0000O3000300RO0RQAAAAB000000-- SEQ A : lcs = ---AAAAAAB-------0-R00000-RQAB----QAAAAAAAAAAAAAA----AAAAAAAAAA---------------AAAA---------AAAAAAAAAAAA-00R00-0-------00001-AAAAA-AAAAAA--00000000000--0000QAAA--AAAAAAA--0--QABG0000-00--00---0000R-0R00000000-QAAAAAA---G0R00QAAAAAAAAAAAAAAAAAAAAAAAAAA-BRG00000000000--0QAAAABR------G0RQAAAAAAAAAAAAAAB--0----AAAA-BRRG0QAAAAB--00000000--00QAAAAAAAAAAAA--B0000000000000R0000--000-00R-0-QA---B0000---- SEQ B : name = ./pdbstyle-1.73/hk/d1hk8a_.ent c1 SEQ B : residue = DSRVFPTQRDLMAGIVSKHIAKNMVPSFIMKAHESGIIHVHDIDYSPALPFTNCCLVDLKGMLENGFKLGNAQIETPKSIGVATAIMAQITAQVASHQYGGTTFANVDKVLSPYVKRTYAKHIEDAEKWQIADALNYAQSKTEKDVYDAFQAYEYEVNTLFSSNGQTPFVTITFGTGTDWTERMIQKAILKNRIKGLGRDGITPIFPKLVMFVEEGVNLYKDDPNYDIKQLALECASKRMYPDIISAKNNKAITGSSVPVSPMGCRSFLSVWKDSTGNEILDGRNNLGVVTLNLPRIALDSYIGTQFNEQKFVELFNERMDLCFEALMCRISSLKGVKATVAPILYQEGAFGVRLKPDDDIIELFKNGRSSVSLGYIGIHELNILVGRDIGREILTKMNAHLKQWTERTGFAFSLYSTPAENLCYRFCKLDTEKYGSVKDVTDKGWYTNSFHVSVEENITPFEKISREAPYHFIATGGHISYVELPDMKNNLKGLEAVWDYAAQHLDYFGVNMPVDKCFTCGSTHEMTPTENGFVCSICGETDPKKMNTIRRTCAYLGNPN SEQ B : code = --------------------------------------------------------------------------------AAAAAAAAAAAAAAAAB0RG00000RQAAABQAAAAAAAAAAAAAAAA0R0QB1AAAAAAAAAAAAAAAAAAAAAAAAGG00QBRG00O000001RG0GQAAAAAAAAAAAAAAB000QBR000RGO00000000RG100QBGQBQAAAAAAAAAAAB0RGO0000QAAAAAABR0RG0000000000000000QBR0000GR000R00000RQAAAAAABG00RG00QAAAAAAAAAAAAAAAAAAAAAAAABGR00QAB0QAG0001QBRG000QBG0QAAABGR1R000000000QAAAAAABRG0RQAAAAAAAAAAAAAAAAB0RG00000R0RRR1AAAAAAAAAAB000000RGQABRG0000R000QBG000QAAAAAAHAAAAB1BQB0000000000RQAGQAAAAAAAAAAAB00000000000000QB000RG00000QB0000R000000QABG0000---------- SEQ B : lcs = ------------------------------------------------------------------------------------------AAAAAAB0R-00000RQA--BQAAAAAAAAAAAAAAAA------AAAAAAAAAAAAAAAAAAAAAAAA--00--R-00-000001-----AAAAAAAAAAA----000---000---00000000---0------QAAAAAAAAAA--0-------QA-----B---G----000000000000--R0----R000-00000-QAAAAAA-G0-R-00QAAAAAAAAAAAAAAAAAAAAAAAA------A---A------BRG000-------------000000000QAAAA--BRG0RQAAAAAAAAAAAAAA--B0-------------AAAA------B------R----R-----------G0--QAAAA-----------B0000000000-QA--AAAAAAAAAAAB0000000000000------R-00000--0000R0-----QAB-0000---------- RATIO : lcs/trimmed_seq_a = 0.728 (= 286/ 393), lcs/trimmed_seq_b = 0.607 (= 286/ 471) SEQ A : name = ./PDBdata/2HA9.pdb c1 SEQ A : residue = ADIRQVTETIAIEEQNFDIRTITGISLLDCIDPDINRAAEKIYQKITTKAANLVAVGDEIAAELGIPIVNKRVSVTPISLIGAATDATDYVVLAKALDKAAKEIGVDFIGGFSALVQKGYQKGDEILINSIPRALAETDKVCSSVNIGSTKSGINTAVADGRIIKETANLSDGVAKLVVFANAVEDNPFAAFHGVGEADVIINVGVSGPGVVKRALEKVRGQSFDVVAETVKKTAFKITRIGQLVGQASERLGVEFGIVDLSLAPTDSVARVLEEGLETVGTHGTTAALALLNDQVKKGGVACNDEGIAAVQNGSLNLEKLEATAICSDIAIPEDTPAETIAAIADEAAIGVINKTTAVRIIPKGKEGDIEFTAPVKVNGASSVDFISRGGQIPAPI SEQ A : code = --QAAAAAABBJOG0000OR000000RQAB00QGQAAAAAAAAAAAAAABQ3QAAAAAAAAAABR000R0000000OQAAAAABGR0R0RQAAAAAAAAAAAAB00R0010RG0R1QB00001HAAAAABAAAAAA8G00000000000QB0000QAAABQAAAAAAAI80PIQABG0000R00QB00ORG0000RG0R000000001QAAAAAAAAAG0R00QAAAAAAAAAAAAAAAAAAAAAAAAAAABRG00000000000PJ0QAAAABR30R01BG0RQAAAAAAAAAAAAAABQB0O229AAAAHBRRG0QAAAABRR00000000QB00QAAAAAAAAAAAAAAB0000000000000R0000O3000300RO0RQAAAAB000000-- SEQ A : lcs = ----AAAAAB----0000--000000-QA-00-G-AAAAAAAAAAAAAA----AAAAAAAAAABR000R0000000-QAAAAA-G-0R0-QAAAAAAAA----B0-R00-0-----QB0000--AAAAA-AAAAA--G00000000000--0000QA--BQAAAAAAA------ABG0000-00QB00-R-000-R-0-000000---QAAAAAA----0-00QAAAAAAAAAAAAAAAAAAAA-------BR-0000000000----QAAAAB--0-0---0RQAAAAAAAAAAAAA--QB0----AAAA-------AAAABRR----0000--00QAAAAAAAAAAA---B0000000000000R0000--000-00--0RQAA--B000000-- SEQ B : name = ./pdbstyle-1.73/eg/d1eg7a_.ent c1 SEQ B : residue = DIEIAQAAKMKPVMELARGLGIQEDEVELYGKYKAKISLDVYRRLKDKPDGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMVCLREPSLGPSFGIKGGAAGGGYAQVVPMEDINLHFTGDIHAVTYAHNLLAAMVDNHLQQGNVLNIDPRTITWRRVIDLNERALRNIVIGLGGKANGVPRETGFDISVASEVMACLCLASDLMDLKERFSRKVVGYTYDGKPVTAGDLEAQGSMALLMKDAIKPNLVQTLENTPAFIHGGPFANIAHGCNSIIATKTALKLADYVVTEAGFGADLGAEKFYDVKCRYAGFKPDATVIVATVRALKMHGGVPKSDLATENLEALREGFANLEKHIENIGKFGVPAVVAINAFPTDTEAELNLLYELCAKAGAEVALSWAKGGEGGLELARKVLQTLESRPSNFHVLYNLDLSIKDKIAKIATEIYGADGVNYTAEADKAIQRYESLGYGNLPVVMAKTQYSFSDDMTKLGRPRNFTITVREVRLSAGGRLIVPITGAIMTMPGLPKRPAACNIDIDADGVITG SEQ B : code = ----------------------------------------------------------------------------AAAAABR00000000000QAAAG0R0000R000RG001R2AAAB0R0RRQAAAAAAAAAAAAAAAAAAAAB3RQBR0RQAB0RJ0000RG00QABR0000R100QAG0000000000QABGQAAAAAAG0R0QAAAAAAAABG0R000QBR0000QAABR1QAAAAAABQAABG000000QBR0000000000QAB0RR000QAAAAAAAABGR000000000QB0QAAAAAB0QAAABR000R0000000QAAAAAAB000QABQBG00QAAAAAAAAAAAAAAAAAAABR0000000R00QBG0QAAAAAAAAABQG000000RQAB00QAAHQAAAAAAAAAAG0000R000R00QBG0QAAAAAAAAGB0RR0R00000QAAAAAAAAAAAB1RQBG0000000QB0RGRGQBB00000R00000R00000QB00000000RRBRRG0000QG0QAABG000R0000-- SEQ B : lcs = ----------------------------------------------------------------------------AAAAAB-0000000000-QA---0-0--------G-----AAA-------AAAAAAAAAAAAAAAAAAAA-----------------------ABR000-R---------0000000----QAAAAA-G0R0QAAAAAAAAB-0R000QB-0000-AA----AAAAAA--AA-G000000---000000000-QAB------QAAAAAAAABG-000000---QB0-------0-----R000R0000000QAAAAAA-000QA-------AAAAAAAAAAAAAAAAAAABR0000000-00---0QAAAA-----B-----000RQA----AA--AAAAAAAAAA------------QB-0-AAAAAAAA-B-RR0-00000QAAAAAAAAAAAB-----0000000--0-------00000R00000-00000----------R------------QAAB-000-000--- RATIO : lcs/trimmed_seq_a = 0.728 (= 286/ 393), lcs/trimmed_seq_b = 0.607 (= 286/ 471) SEQ A : name = ./PDBdata/2HA9.pdb c1 SEQ A : residue = ADIRQVTETIAIEEQNFDIRTITGISLLDCIDPDINRAAEKIYQKITTKAANLVAVGDEIAAELGIPIVNKRVSVTPISLIGAATDATDYVVLAKALDKAAKEIGVDFIGGFSALVQKGYQKGDEILINSIPRALAETDKVCSSVNIGSTKSGINTAVADGRIIKETANLSDGVAKLVVFANAVEDNPFAAFHGVGEADVIINVGVSGPGVVKRALEKVRGQSFDVVAETVKKTAFKITRIGQLVGQASERLGVEFGIVDLSLAPTDSVARVLEEGLETVGTHGTTAALALLNDQVKKGGVACNDEGIAAVQNGSLNLEKLEATAICSDIAIPEDTPAETIAAIADEAAIGVINKTTAVRIIPKGKEGDIEFTAPVKVNGASSVDFISRGGQIPAPI SEQ A : code = --QAAAAAABBJOG0000OR000000RQAB00QGQAAAAAAAAAAAAAABQ3QAAAAAAAAAABR000R0000000OQAAAAABGR0R0RQAAAAAAAAAAAAB00R0010RG0R1QB00001HAAAAABAAAAAA8G00000000000QB0000QAAABQAAAAAAAI80PIQABG0000R00QB00ORG0000RG0R000000001QAAAAAAAAAG0R00QAAAAAAAAAAAAAAAAAAAAAAAAAAABRG00000000000PJ0QAAAABR30R01BG0RQAAAAAAAAAAAAAABQB0O229AAAAHBRRG0QAAAABRR00000000QB00QAAAAAAAAAAAAAAB0000000000000R0000O3000300RO0RQAAAAB000000-- SEQ A : lcs = ---AAAAAAB---G-------00000-QAB00Q--AAAAAAAAAAAAA-BQ--AAAAAAAAAABR---R--------QAAAAABG-0-0-QAAAAAAAAAAAAB0-R0---R-0----0000--AAAAA-AAAAAA--00000000000--00--QAAA--AAAAAAA------ABG0000R00--00-R-0000RG0-00000000-QAAAAAAAAAG0-00QAAAAAAAAAAAAAAAAAAAAAAAAAAABR-00000000000--0QAAAAB--0-01-G0RQAAAAAAAAAAAAA-B--0----AAAA-B----QAAAAB--------00QB0-QAAAAAAAAAAAAAAB0000000000000R------------R-0-QAAAAB00000--- SEQ B : name = ./pdbstyle-1.73/ms/d1mswd_.ent c1 SEQ B : residue = NTINIAKNDFSDIELAAIPFNTLADHYGERLAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEEVKAKRGKRPTAFQFLQEIKPEAVAYITIKTTLACLTSADNTTVQAVASAIGRAIEDEARFGRIRDLEAKHFKKNVEEQLNKRVGHVYKKAFMQVVEADMLSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGMVSLHRQSETIELAPEYAEAIATRAGALAGISPMFQPCVVPPKPWTGITGGGYWANGRRPLALVRTHSKKALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKWKHCPVEDIPAIEREELPMKTAWKRAAAAVYRKDKARKSRRISLEFMLEQANKFANHKAIWFPYNMDWRGRVYAVSMFNPQGNDMTKGLLTLAKGKPIGKEGYYWLKIHGANCAGVDKVPFPERIKFIEENHENIMACAKSPLENTWWAEQDSPFCFLAFCFEYAGVQHHGLSYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIYGIVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGTKALAGQWLAYGVTRSVTKRSVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTVVAAVEAMNWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKKPIQTRLNLMFLGQFRLQPTINTNKDSEIDAHKQESGIAPNFVHSQDGSHLRKTVVWAHEKYGIESFALIHDSFGTIPADAANLFKAVRETMVDTYESCDVLADFYDQFADQLHESQLDKMPALPAKGNLNLRDILESDFAFA SEQ B : code = --------------------------------------------------------------------------------AAAAAAAAAAAABG00000QAAAAAAB00QAAAAAAAAHAAAHAABG0RRR0QAAAAAAAAAAAAAAAAAAABGRGRGQAABGR11AAAABG00QAAAAAAAAAAAAAAAAB0QBR0R000000QAAAAAAAAAAAAAAAAB0RR0000003000000QAAAAAAAAAAAAAAABG0R0000RG00000R0R0R0000GR0QG000RGR0001QAAAABR0000QAAAAHAAAAABG0000RQAAAAAAB1QABGRG0RG0RR00RG000000O31QAABHAHAAAAAAAAAAAAAAAAAAAAHAAABQ30R000000000QB000000GQG0QBG0QAAAABG001G003R0QAAAAAAAAAAAAABRRHRG0QAAAAAAAAABQAAAAAAAB0QAG0RQAABGR0QAAAAAAAAAAAAAAB00QBG00000000000RQAAAAAAAABR0QIAAAABRRG00RG000QA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SEQ B : lcs = --------------------------------------------------------------------------------------AAAAAABG00000QA-----B00QAAAAAAAA-AAA-AAB------QAAAAAAAAAA---------B-R-R-QA------AAAABG00QAAAAAAAAAAAA----B0--R0R00000-------AAAAAAAAAAA-0--000000-000000QAAAAAAAAAAA----BG0-000-R----00-0-0R0000-R--G000---00---------0000QAAAA-AAAAA-G000--QA---------------------------------AA--A-AAAAAAAAAAAAAAAAAAAA-AAAB---R000000000--000-----------QAAAAB-001G0--R-QAAAAAAAAAAAAAB-----0------AAAABQAAAA---B0---0-Q--B--0QAAAAAAAAAAAAAAB00---00000000000R----------R0Q-AAAAB---00--000-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- RATIO : lcs/trimmed_seq_a = 0.725 (= 285/ 393), lcs/trimmed_seq_b = 0.605 (= 285/ 471) SEQ A : name = ./PDBdata/2HA9.pdb c1 SEQ A : residue = ADIRQVTETIAIEEQNFDIRTITGISLLDCIDPDINRAAEKIYQKITTKAANLVAVGDEIAAELGIPIVNKRVSVTPISLIGAATDATDYVVLAKALDKAAKEIGVDFIGGFSALVQKGYQKGDEILINSIPRALAETDKVCSSVNIGSTKSGINTAVADGRIIKETANLSDGVAKLVVFANAVEDNPFAAFHGVGEADVIINVGVSGPGVVKRALEKVRGQSFDVVAETVKKTAFKITRIGQLVGQASERLGVEFGIVDLSLAPTDSVARVLEEGLETVGTHGTTAALALLNDQVKKGGVACNDEGIAAVQNGSLNLEKLEATAICSDIAIPEDTPAETIAAIADEAAIGVINKTTAVRIIPKGKEGDIEFTAPVKVNGASSVDFISRGGQIPAPI SEQ A : code = --QAAAAAABBJOG0000OR000000RQAB00QGQAAAAAAAAAAAAAABQ3QAAAAAAAAAABR000R0000000OQAAAAABGR0R0RQAAAAAAAAAAAAB00R0010RG0R1QB00001HAAAAABAAAAAA8G00000000000QB0000QAAABQAAAAAAAI80PIQABG0000R00QB00ORG0000RG0R000000001QAAAAAAAAAG0R00QAAAAAAAAAAAAAAAAAAAAAAAAAAABRG00000000000PJ0QAAAABR30R01BG0RQAAAAAAAAAAAAAABQB0O229AAAAHBRRG0QAAAABRR00000000QB00QAAAAAAAAAAAAAAB0000000000000R0000O3000300RO0RQAAAAB000000-- SEQ A : lcs = --QAAAAAAB---G-------------Q-B---GQAAAAAAAAAAAAAABQ--AAAAAAAAA-BR000-000000--Q-----B-R0---QAAAAAAAAAAAAB00R00-0-------0000--AAAAA-AAAAAA--0000000000-QB0000QAAABQAAAAAAA------AB-----R00--00---0000--0R-----000-QAAAAAAAAA-0R00QAAAAAAAAAAAAAAAAAAAAAAAAAAAB--00000000000--0QAAAABR-0-0--G0-QAAAAAAAAAAAAAA--------AAAA-BR--0QAAAAB-----00000QB00QAAAAAAAAAAAAAAB0000000000000-0000--000-00--0-QAAAAB0000---- SEQ B : name = ./pdbstyle-1.73/ee/d1eexa_.ent c1 SEQ B : residue = MRSKRFEALAKRPVNQDGFVKEWIEEGFIAMESPNDPKPSIKIVNGAVTELDGKPVSDFDLIDHFIARYGINLNRAEEVMAMDSVKLANMLCDPNVKRSEIVPLTTAMTPAKIVEVVSHMNVVEMMMAMQKMRARRTPSQQAHVTNVKDNPVQIAADAAEGAWRGFDEQETTVAVARYAPFNAIALLVGSQVGRPGVLTQCSLEEATELKLGMLGHTCYAETISVYGTEPVFTDGDDTPWSKGFLASSYASRGLKMRFTSGSGSEVQMGYAEGKSMLYLEARCIYITKAAGVQGLQNGSVSCIGVPSAVPSGIRAVLAENLICSSLDLECASSNDQTFTHSDMRRTARLLMQFLPGTDFISSGYSAVPNYDNMFAGSNEDAEDFDDYNVIQRDLKVDGGLRPVREEDVIAIRNKAARALQAVFAGMGLPPITDEEVEAATYAHGSKDMPERNIVEDIKFAQEIINKNRNGLEVVKALAQGGFTDVAQDMLNIQKAKLTGDYLHTSAIIVGDGQVLSAVNDVNDYAGPATGYRLQGERWEEIKNIPGALDPN SEQ B : code = ------------------------------------------------------------------------------AABG0QAAAAAAABGQBG0QAAHAAAAABG0QAAAAAAAABG0QAAAAAAAAABGRGRG000000000QBR0QAAAAAAAAAAAAB00R000000R0QABQAAAAAAAAAAAAAB00B00000000QAAAAAAAAB0RGR001RR00000QAAAAABRG0QAAAAAAAAAAAABR000000000RQAAAB0GRRR00QAAAAAAAAAAAAABR0R0001RR0QBQAGAABG0RQAAAAAAAAAAAAABR000R00RGG000RGQAAAAAAAAAAAAB00R0R0R0R0RG0QAB0QBR00R00QABQAAAAAAAAABR00RRG0000QAAAAAAAAAAAAAAAAAAAABR00000QAAAAAABB0R0QABG000RQAAAAAAAAAAAABR00QAAAAAAAAAGRGQAAAAAAAAAAAAA9GRQABG0R00000RR0000QBAB0000000RG000000QAAAAABG00R300-- SEQ B : lcs = -----------------------------------------------------------------------------------QAAAAAA-BGQBG-QAA-AAAA-----AAAAAAAAB--QAAAAAAAAAB-R---000000000QBR0QAAAAAAAAAAAAB00R000000-0-A--AAAAAAAAAA----00-00000000Q--------B----------0000QAAA--B---Q----AAAAAAAABR000000000R-----0----00QAAAAAAAAA------0R00-----Q--A-A------AAAAAAAAAAAAA-----------------AAAAAAAAAAAAB00-0-0-0-0--0---0---00-00Q--------AAAABR00--G0---QAAAAAAAAAAAAAAAAAA--BR0----QAAAA--B-0-0----000-Q------------B-00-------------QAAAAAAAAAAAAA----AB-0-00000--0000----0000000--000000QAAAA-B-00--00-- RATIO : lcs/trimmed_seq_a = 0.725 (= 285/ 393), lcs/trimmed_seq_b = 0.605 (= 285/ 471) SEQ A : name = ./PDBdata/2HA9.pdb c1 SEQ A : residue = ADIRQVTETIAIEEQNFDIRTITGISLLDCIDPDINRAAEKIYQKITTKAANLVAVGDEIAAELGIPIVNKRVSVTPISLIGAATDATDYVVLAKALDKAAKEIGVDFIGGFSALVQKGYQKGDEILINSIPRALAETDKVCSSVNIGSTKSGINTAVADGRIIKETANLSDGVAKLVVFANAVEDNPFAAFHGVGEADVIINVGVSGPGVVKRALEKVRGQSFDVVAETVKKTAFKITRIGQLVGQASERLGVEFGIVDLSLAPTDSVARVLEEGLETVGTHGTTAALALLNDQVKKGGVACNDEGIAAVQNGSLNLEKLEATAICSDIAIPEDTPAETIAAIADEAAIGVINKTTAVRIIPKGKEGDIEFTAPVKVNGASSVDFISRGGQIPAPI SEQ A : code = --QAAAAAABBJOG0000OR000000RQAB00QGQAAAAAAAAAAAAAABQ3QAAAAAAAAAABR000R0000000OQAAAAABGR0R0RQAAAAAAAAAAAAB00R0010RG0R1QB00001HAAAAABAAAAAA8G00000000000QB0000QAAABQAAAAAAAI80PIQABG0000R00QB00ORG0000RG0R000000001QAAAAAAAAAG0R00QAAAAAAAAAAAAAAAAAAAAAAAAAAABRG00000000000PJ0QAAAABR30R01BG0RQAAAAAAAAAAAAAABQB0O229AAAAHBRRG0QAAAABRR00000000QB00QAAAAAAAAAAAAAAB0000000000000R0000O3000300RO0RQAAAAB000000-- SEQ A : lcs = --QAAAAAAB---G-------------Q-B---GQAAAAAAAAAAAAAABQ--AAAAAAAAA-BR000-0000000-QAAAAAB--0R0RQAAAAAAAAAAAAB00R00-0R-0R1--0000--AAAAABAAAAAA--00000000000QB0000QAAABQAAAAAAA------AB-0000R00QB00-R-0000RG0R----0000-QAAAAAAAAA-0R00QAAAAAAAAAAAAAAAAAAAA-------BR--------0000--0QAAAAB--0R0-BG0RQAAAAAAAAAAAA--B--0----AAAA-------AAAABRR------------QAAAAAAAAAAAAAAB0000000000000R0000--000-------QAAAAB0000---- SEQ B : name = ./pdbstyle-1.73/iw/d1iwpa_.ent c1 SEQ B : residue = MKRSKRFAVLAQRPVNQDGLIGEWPEEGLIAMDSPFDPVSSVKVDNGLIVELDGKRRDQFDMIDRFIADYAINVERTEQAMRLEAVEIARMLVDIHVSREEIIAITTAITPAKAVEVMAQMNVVEMMMALQKMRARRTPSNQCHVTNLKDNPVQIAADAAEAGIRGFSEQETTVGIARYAPFNALALLVGSQCGRPGVLTQCSVEEATELELGMRGLTSYAETVSVYGTEAVFTDGDDTPWSKAFLASAYASRGLKMRYTSGTGSEALMGYSESKSMLYLESRCIFITKGAGVQGLQNGAVSCIGMTGAVPSGIRAVLAENLIASMLDLEVASANDQTFSHSDIRRTARTLMQMLPGTDFIFSGYSAVPNYDNMFAGSNFDAEDFDDYNILQRDLMVDGGLRPVTEAETIAIRQKAARAIQAVFRELGLPPIADEEVEAATYAHGSNEMPPRNVVEDLSAVEEMMKRNITGLDIVGALSRSGFEDIASNILNMLRQRVTGDYLQTSAILDRQFEVVSAVNDINDYQGPGTGYRISAERWAEIKNIPGVVQPDTIE SEQ B : code = --------------------------------------------------------------------------------ABG0QAAAAAAABGQBG0QAAAAAHAABG0QAAAAAAAABG0QAAAAAAAAABGRGRG000000000QBR0QAAAAAAAAAAAAB00R000000RGQABQAAAAAAAAAAAAAB00R000000001AAAAAAAABRR0R001RR000R0QAAAAABRG0QAAAAAAAAAAAABR0000000001QAAAB0GRRR00QAAAAAAAAAAAAABR0R0001RR0QBQAIAABG0RQAAAAAAAAAAAAABR000R00RRG000RGQAAAAAAAAB2AAB00R0R0R0O0RG0QABGQBR00R00QABQAAAAAAAAB3R00RRG0000QAAAAAAAAAAAAAAAAAAAABR00000QAAAAAABB0R0QABG000RQAAAAAAAAAAAABR00QAAAAAAAAABRRQAAAAAAAAAAAAAABRQABG0R0000QBR0000QBQB0000R00RG00000QAAAAAAAB00R00OQ---- SEQ B : lcs = ------------------------------------------------------------------------------------QAAAAAA-BGQBG-QAAAAA-A-----AAAAAAAAB--QAAAAAAAAAB-R---000000000---0QAAAAA-------B0-R0-----R----QAAAAAAAAAAAA-B00R000----------------R0R--1--000-0-AAAAAB----------AAAAAA--000000000-----------00Q-------------B-0-000----Q--A-AAB---QAAAAAAAA-----B-000-0-R--00---Q------------B00R0-0-0-0RG0------R00-00QA--AAAAAAAA----0R--00--QAAAAAAAAAAAAAAAAAAAABR00000QAAAA--B-0R0--BG0--RQAAAAAAAAAAAAB-0--AAAAAAAA-BRRQAAAAAAAAAAAAAAB-----0-0000---0000----0000R00--00000QAAAA---B00-00------ RATIO : lcs/trimmed_seq_a = 0.725 (= 285/ 393), lcs/trimmed_seq_b = 0.605 (= 285/ 471) SEQ A : name = ./PDBdata/2HA9.pdb c1 SEQ A : residue = ADIRQVTETIAIEEQNFDIRTITGISLLDCIDPDINRAAEKIYQKITTKAANLVAVGDEIAAELGIPIVNKRVSVTPISLIGAATDATDYVVLAKALDKAAKEIGVDFIGGFSALVQKGYQKGDEILINSIPRALAETDKVCSSVNIGSTKSGINTAVADGRIIKETANLSDGVAKLVVFANAVEDNPFAAFHGVGEADVIINVGVSGPGVVKRALEKVRGQSFDVVAETVKKTAFKITRIGQLVGQASERLGVEFGIVDLSLAPTDSVARVLEEGLETVGTHGTTAALALLNDQVKKGGVACNDEGIAAVQNGSLNLEKLEATAICSDIAIPEDTPAETIAAIADEAAIGVINKTTAVRIIPKGKEGDIEFTAPVKVNGASSVDFISRGGQIPAPI SEQ A : code = --QAAAAAABBJOG0000OR000000RQAB00QGQAAAAAAAAAAAAAABQ3QAAAAAAAAAABR000R0000000OQAAAAABGR0R0RQAAAAAAAAAAAAB00R0010RG0R1QB00001HAAAAABAAAAAA8G00000000000QB0000QAAABQAAAAAAAI80PIQABG0000R00QB00ORG0000RG0R000000001QAAAAAAAAAG0R00QAAAAAAAAAAAAAAAAAAAAAAAAAAABRG00000000000PJ0QAAAABR30R01BG0RQAAAAAAAAAAAAAABQB0O229AAAAHBRRG0QAAAABRR00000000QB00QAAAAAAAAAAAAAAB0000000000000R0000O3000300RO0RQAAAAB000000-- SEQ A : lcs = --QAAAAAAB---G-------------Q-B---GQAAAAAAAAAAAAAABQ--AAAAAAAAA-BR000-0000000-QAAAAAB--0R0RQAAAAAAAAAAAAB00R00-0R-0R1--0000--AAAAABAAAAAA--00000000000QB0000QAAABQAAAAAAA------AB-0000R00QB00-R-0000RG0R----0000-QAAAAAAAAA-0R00QAAAAAAAAAAAAAAAAAAAA-------BR--------0000--0QAAAAB--0R0-BG0RQAAAAAAAAAAAA--B--0----AAAA-------AAAABRR------------QAAAAAAAAAAAAAAB0000000000000R0000--000-------QAAAAB0000---- SEQ B : name = ./pdbstyle-1.73/iw/d1iwpa_.ent c1 SEQ B : residue = MKRSKRFAVLAQRPVNQDGLIGEWPEEGLIAMDSPFDPVSSVKVDNGLIVELDGKRRDQFDMIDRFIADYAINVERTEQAMRLEAVEIARMLVDIHVSREEIIAITTAITPAKAVEVMAQMNVVEMMMALQKMRARRTPSNQCHVTNLKDNPVQIAADAAEAGIRGFSEQETTVGIARYAPFNALALLVGSQCGRPGVLTQCSVEEATELELGMRGLTSYAETVSVYGTEAVFTDGDDTPWSKAFLASAYASRGLKMRYTSGTGSEALMGYSESKSMLYLESRCIFITKGAGVQGLQNGAVSCIGMTGAVPSGIRAVLAENLIASMLDLEVASANDQTFSHSDIRRTARTLMQMLPGTDFIFSGYSAVPNYDNMFAGSNFDAEDFDDYNILQRDLMVDGGLRPVTEAETIAIRQKAARAIQAVFRELGLPPIADEEVEAATYAHGSNEMPPRNVVEDLSAVEEMMKRNITGLDIVGALSRSGFEDIASNILNMLRQRVTGDYLQTSAILDRQFEVVSAVNDINDYQGPGTGYRISAERWAEIKNIPGVVQPDTIE SEQ B : code = ----------------------------------------------------------------------------------G0QAAAAAAABGQBG0QAAAAAHAABG0QAAAAAAAABG0QAAAAAAAAABGRGRG000000000QBR0QAAAAAAAAAAAAB00R000000RGQABQAAAAAAAAAAAAAB00R000000001AAAAAAAABRR0R001RR000R0QAAAAABRG0QAAAAAAAAAAAABR0000000001QAAAB0GRRR00QAAAAAAAAAAAAABR0R0001RR0QBQAIAABG0RQAAAAAAAAAAAAABR000R00RRG000RGQAAAAAAAAB2AAB00R0R0R0O0RG0QABGQBR00R00QABQAAAAAAAAB3R00RRG0000QAAAAAAAAAAAAAAAAAAAABR00000QAAAAAABB0R0QABG000RQAAAAAAAAAAAABR00QAAAAAAAAABRRQAAAAAAAAAAAAAABRQABG0R0000QBR0000QBQB0000R00RG00000QAAAAAAAB00R00OQAB-- SEQ B : lcs = ------------------------------------------------------------------------------------QAAAAAA-BGQBG-QAAAAA-A-----AAAAAAAAB--QAAAAAAAAAB-R---000000000---0QAAAAA-------B0-R0-----R----QAAAAAAAAAAAA-B00R000----------------R0R--1--000-0-AAAAAB----------AAAAAA--000000000-----------00Q-------------B-0-000----Q--A-AAB---QAAAAAAAA-----B-000-0-R--00---Q------------B00R0-0-0-0RG0------R00-00QA--AAAAAAAA----0R--00--QAAAAAAAAAAAAAAAAAAAABR00000QAAAA--B-0R0--BG0--RQAAAAAAAAAAAAB-0--AAAAAAAA-BRRQAAAAAAAAAAAAAAB-----0-0000---0000----0000R00--00000QAAAA---B00-00------ RATIO : lcs/trimmed_seq_a = 0.725 (= 285/ 393), lcs/trimmed_seq_b = 0.605 (= 285/ 471) SEQ A : name = ./PDBdata/2HA9.pdb c1 SEQ A : residue = ADIRQVTETIAIEEQNFDIRTITGISLLDCIDPDINRAAEKIYQKITTKAANLVAVGDEIAAELGIPIVNKRVSVTPISLIGAATDATDYVVLAKALDKAAKEIGVDFIGGFSALVQKGYQKGDEILINSIPRALAETDKVCSSVNIGSTKSGINTAVADGRIIKETANLSDGVAKLVVFANAVEDNPFAAFHGVGEADVIINVGVSGPGVVKRALEKVRGQSFDVVAETVKKTAFKITRIGQLVGQASERLGVEFGIVDLSLAPTDSVARVLEEGLETVGTHGTTAALALLNDQVKKGGVACNDEGIAAVQNGSLNLEKLEATAICSDIAIPEDTPAETIAAIADEAAIGVINKTTAVRIIPKGKEGDIEFTAPVKVNGASSVDFISRGGQIPAPI SEQ A : code = --QAAAAAABBJOG0000OR000000RQAB00QGQAAAAAAAAAAAAAABQ3QAAAAAAAAAABR000R0000000OQAAAAABGR0R0RQAAAAAAAAAAAAB00R0010RG0R1QB00001HAAAAABAAAAAA8G00000000000QB0000QAAABQAAAAAAAI80PIQABG0000R00QB00ORG0000RG0R000000001QAAAAAAAAAG0R00QAAAAAAAAAAAAAAAAAAAAAAAAAAABRG00000000000PJ0QAAAABR30R01BG0RQAAAAAAAAAAAAAABQB0O229AAAAHBRRG0QAAAABRR00000000QB00QAAAAAAAAAAAAAAB0000000000000R0000O3000300RO0RQAAAAB000000-- SEQ A : lcs = --QAAAAAAB--OG0000-R000000RQAB0-Q--AAAAAAAAAAAAAABQ--AAAAAAAAAABR000-000000--QAAAAA-G-0-0-QAAAAAAAAAAAAB--R0---RG-----00001-AAAAA-AAAAAA--00000000000QB0000QA--BQAAAAAAA------AB-0000-00--00---0000--0-00000000-QAAAAAAAAA-0R00QAAAAAAAAAA-------------------G00000000------QAAAA-------B---QAAAAAAAAAAA---BQB0---------B--G0QAA--BR-00000000--00QAAAAAAAAAAAAAAB0000000000000-0000--000-00R-0RQAAAAB000000-- SEQ B : name = ./pdbstyle-1.73/i7/d1i7da_.ent c1 SEQ B : residue = MRLFIAEKPSLARAIADVLPKPHRKGDGFIECGNGQVVTWCIGHLLEQAQPDAYDSRYARWNLADLPIVPEKWQLQPRPSVTKQLNVIKRFLHEASEIVHAGDPDREGQLLVDEVLDYLQLAPEKRQQVQRCLINDLNPQAVERAIDRLRSNSEFVPLCVSALARARADWLYGINMTRAYTILGRNAGYQGVLSVGRVQTPVLGLVVRRDEEIENFVAKDFFEVKAHIVTPADERFTAIWQPSEACEPYQDEEGRLLHRPLAEHVVNRISGQPAIVTSYNDKRESESAPLPFSLSALQIEAAKRFGLSAQNVLDICQKLYETHKLITFPRSDCRYLPEEHFAGRHAVMNAISVHAPDLLPQPVVDPDIRNRCWDDKKVDAHHAIIPTARSSAINLTENEAKVYNLIARQYLMQFCPDAVFRKCVIELDIAKGKFVAKARFLAEAGWRTLLGSKERDEENDGTPLPVVAKGDELLCEKGEVVERQTQPPRHFTDATLLSAMTGIARFVQDKDLKKILRATDGLGTEATRAGIIELLFKRGFLTKKGRYIHSTDAGKALFHSLPEMATRPDMTAHWESVLTQISEKQCRYQDFMQPLVGTLYQLIDQAKRTPVRQFRGIVAP SEQ B : code = --0000R0QAAAAAAAABG00O00000RG0000RR000000R00RG0000QAAB0QAABG00QAB0O000R000000RQB1QAAAAAAAAAAABGR0000000RGQAAAAAAAAAAAABR00QAAAAB000000RGR0QAAAAAAAAG000QAABQAAAAAAAAAAAAAAAA1AAAAAAAAAAAAABR0RG03000R1QAAAAAAAAAAAAAAAB000000000000000QBR0000000000QABQHBG0QBR00RGQAAAAAAAAB1R000000R0000000000000000QAAAAAAAAA00R00QAAAAAAAAAAG00RRR0001B0RGRG00QAAAABQAAAAAAAAAABQABGO0QBG0QBG00QAB0QABG0R0000000R00000000QAAAAAAAAAAAAAAAABG00000000000000RRRR00000000R0R0QAABG00QAABQBR000R000000R000--------------------------------------------------------------------------------------------------------------------------------------------------- SEQ B : lcs = --------QAAAAAA--B---O------G0000R-000000R--------QA-B0QAA-----A------------------AAAAAAAAAAAB-----------QAAAAAAAAAA--BR00------000000---0QAAAAA---G00-Q----------------------AAAAAAAAAAAABR0RG0-000-1-AAAAAAAAAAA---------00000000000QB-0000------QAB------------QAAAAAAAAB--000000-000000000000000-QAAAAAAAAA0-R00QAAAAAAAAAAG00---000--0----00QAAAABQAAAAAAAAAA--AB---QB-0-BG0-QA---AB--R0000000-000-----QAAAAAAAAAAAAAA--B-00000000000000----00000000R0R-QAA-----AAB---000-000---------------------------------------------------------------------------------------------------------------------------------------------------------- RATIO : lcs/trimmed_seq_a = 0.725 (= 285/ 393), lcs/trimmed_seq_b = 0.605 (= 285/ 471) SEQ A : name = ./PDBdata/2HA9.pdb c1 SEQ A : residue = ADIRQVTETIAIEEQNFDIRTITGISLLDCIDPDINRAAEKIYQKITTKAANLVAVGDEIAAELGIPIVNKRVSVTPISLIGAATDATDYVVLAKALDKAAKEIGVDFIGGFSALVQKGYQKGDEILINSIPRALAETDKVCSSVNIGSTKSGINTAVADGRIIKETANLSDGVAKLVVFANAVEDNPFAAFHGVGEADVIINVGVSGPGVVKRALEKVRGQSFDVVAETVKKTAFKITRIGQLVGQASERLGVEFGIVDLSLAPTDSVARVLEEGLETVGTHGTTAALALLNDQVKKGGVACNDEGIAAVQNGSLNLEKLEATAICSDIAIPEDTPAETIAAIADEAAIGVINKTTAVRIIPKGKEGDIEFTAPVKVNGASSVDFISRGGQIPAPI SEQ A : code = --QAAAAAABBJOG0000OR000000RQAB00QGQAAAAAAAAAAAAAABQ3QAAAAAAAAAABR000R0000000OQAAAAABGR0R0RQAAAAAAAAAAAAB00R0010RG0R1QB00001HAAAAABAAAAAA8G00000000000QB0000QAAABQAAAAAAAI80PIQABG0000R00QB00ORG0000RG0R000000001QAAAAAAAAAG0R00QAAAAAAAAAAAAAAAAAAAAAAAAAAABRG00000000000PJ0QAAAABR30R01BG0RQAAAAAAAAAAAAAABQB0O229AAAAHBRRG0QAAAABRR00000000QB00QAAAAAAAAAAAAAAB0000000000000R0000O3000300RO0RQAAAAB000000-- SEQ A : lcs = ---A-----B-----000--000000R--B----QAAAAAAAAAAAAA-BQ-QAAAAAAAAAA---------------AAAAAB--0-0-Q----AAAAAAAAB00-00-0RG-R-Q-------AAAAABAAAAAA--00---------QB0000QA--BQ--------80--QABG0000-00QB00-RG0000R-0-00000000-QAAAAAAAAAG0R00QAAAAAAAAAAAAAAAAAAAAAAAAAAABRG0000000000----QAAAABR-0R0---0RQAAAAAAAAAAAAAABQB0----AAAAHBR-G0QAAA--RR00000000--00QAAAAAAAAAAAAAA-0000000000000-0000--000-00--0RQAAAA-000000-- SEQ B : name = ./pdbstyle-1.73/uf/d1uf2a_.ent c1 SEQ B : residue = QSVVSRTPIPLSKIGLQDVKKLFDINVIKCGSSLRIVDEPQVTFIVSYAKDIYDKFMCIEHDSAYEPSLTMHRVRVIYSMLNDYCAKMISEVPYESSFVGELPVKSVTLNKLGDRNMDALAEHLLFEHDVVNAQRENRIFYQRKSAPAVPVIFGDDLEPAVRERANLYHRYSVPYHQIELALHALANDLLSIQYCHPTVVYNYLSSRAPNFLRLDDQVSLKLTSAGIGTLMPRPVVQLLDYDLVYMSPLALNNLASRLLRKISLHLVMQMVTAVQQDLGEVVSVSSNVTNPASACLVRMNVQGVQTLAVFIAQSMLNPNISYGMISGLTLDCFSNFIYGACLMLFQALIPPSALTARQRLDINNRFAYFLIKCHATQATTARLVANQVIYPVDAIDQWQSNGRDVLVAIYNNLLPGELVLTNLIQTYFRGNTAQQAAEILIPADQTSYGANETRALSAPYLFGAPINMLAPDARLSTYKRDLALPDRSPILITTVEGQNSISIENLRHKTGLIRAMYLNGFVTQPPAWIRNANSNTALLSRFLDATPNLLGIYEAILANTYANAVNVYCDSVYRADIPIEWKLHQSVDPQDLLFGVFGIVPQYQILNEAVPDFFAGGEDILILQLIRAVYDTLSNKLGRNPADIFHLEEVFKVIEEIVSVLVQQKIDVRKYFTESMRSGSFSKPRWDNFLRRPVAQRLPNLYSVIMTQADHVYNYMTQLTHIIPITDCFYIVKNSGFVDRGSTGPVIASSSVYENVLKVVHTIADFDAANALRLQRRRVDNTSYTDSLSDMFNGLRSISSSEFVRSVNGRSVFTEGRIDAIKVNMRAKFDLQFITEEGGYSKPPNVKKLMFSDFLSFLDSHKSDYRPPLLTVPITIGLNNLGETNSNTLRMRSEAIDEYFSSYVGAQILVPINVVDTRVYTEFSELRNFFTGDVVIRDDPFDVWDGVKATYIPIGVHGVRLDPNGDQ SEQ B : code = --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AB0QHJ0000000R0RBQAABQAAAAAAAAAAABG0QABG0QAAAAAAAAAAAAAAAB00G0QAAAAAAAABRR000QABQAABG00RGRQAAAAAAG00QABQAAAAAAAAABRR00QAAAB00R00QABGQ8RG000QAB1QBG0RR00QAG000RRQBQAAAAABR00RG0000R000000R000RQAAAAAAAAAAAG1QG00R000QAAB80QHAAAAAAAAAAAHQAAAAAAAAAAAABQAAB1RGPJG00G0RQBG0QABG000000QAAAIAAAB0000RR00000000R0R0RQAAAAAAAAAAAAAAAAAAABR00QAB000QAAAAAAAAAHAAAB0RGR00QAAAG0R0QBGR000QAAAAAAABG0000000QAAAAAAAAAAAAAAAAAAAAAGG000R00000R0000000R0RGRG000RG00QABG00R00000QAAAAAAA9R00000R0G00-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SEQ B : lcs = --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AB0---0000000-0RBQAA--AAAAAAAAAAAB--Q----QAAAAAAAAAAAAAAAB00--QAAAAAAAAB--000--------00RGRQAAAAA------B-AAAAAA------00Q---B00-00QAB-Q8--0--QAB---G0--00---000--Q-------B-00RG0000R000000-000-QAAAAAAAAA--G---0-R00-QAA-----AAAAAAAAAAA--AAAAAAAAAAAA--AAB-RG---00-0----0----000000QAAA-A--B----R--------0R0-0RQAAAAAAAAAAAAAA-----B---Q-B0--------AAAAH---B-RG-0-QAAA--R----R000----------0000000QAAAAAAAAAAAAAA---------000-00000-0000000-0----000--00----00R-----QAAAA-----00000-0----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- // [NOTE]: A trimmed sequence is the sequence obtained by removing residues of // irregular 5-tile codes, such as '-', where regular 5-tile codes are // {0, A, R, Q, B, G, 1, O, H, 3, J, 8, P, 9, 2, I}. Irregular 5-tile // codes are ommited during the LCS computation and LCSs consist of // regular 5-tile codes only.