INPUT SEQUENCE (A) : data/2HA9.code
INPUT SEQUENCE (B) : data/target_ASTRAL173.code
SUBSEQUENCE OPTION : Subsequence comparison (|compare window|/|the shorter seq.| = 1.20)
SORT POLICY : Domain search of the key protein
EXEC OPTION : [Length only] Hirschberg's algorithm
RATIO TABLE : range | frequency
RATIO TABLE : --------------|--------------
RATIO RABLE : [0.9, 1.0] | 77
RATIO TABLE : [0.8, 0.9) | 940
RATIO TABLE : [0.7, 0.8) | 17575
RATIO TABLE : [0.6, 0.7) | 85998
RATIO TABLE : [0.5, 0.6) | 70046
RATIO TABLE : [0.4, 0.5) | 28582
RATIO TABLE : [0.3, 0.4) | 7902
RATIO TABLE : [0.2, 0.3) | 2637
RATIO TABLE : [0.1, 0.2) | 718
RATIO TABLE : [0.0, 0.1) | 333
RATIO : lcs/trimmed_seq_a = 0.850 (= 34/ 40), lcs/trimmed_seq_b = 1.000 (= 34/ 34)
SEQ A : name = ./PDBdata/2HA9.pdb c1
SEQ A : residue = ADIRQVTETIAIEEQNFDIRTITGISLLDCIDPDINRAAEKIYQKITTKAANLVAVGDEIAAELGIPIVNKRVSVTPISLIGAATDATDYVVLAKALDKAAKEIGVDFIGGFSALVQKGYQKGDEILINSIPRALAETDKVCSSVNIGSTKSGINTAVADGRIIKETANLSDGVAKLVVFANAVEDNPFAAFHGVGEADVIINVGVSGPGVVKRALEKVRGQSFDVVAETVKKTAFKITRIGQLVGQASERLGVEFGIVDLSLAPTDSVARVLEEGLETVGTHGTTAALALLNDQVKKGGVACNDEGIAAVQNGSLNLEKLEATAICSDIAIPEDTPAETIAAIADEAAIGVINKTTAVRIIPKGKEGDIEFTAPVKVNGASSVDFISRGGQIPAPI
SEQ A : code = --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAG0R00QAAAAAAAAAAAAAAAAAAAAAAAAAAAB-------------------------------------------------------------------------------------------------------------------------------------------------
SEQ A : lcs = --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAA------AAAAAAAAAAAAAAAAAAAAAAAAAAAB-------------------------------------------------------------------------------------------------------------------------------------------------
SEQ B : name = ./pdbstyle-1.73/eh/d1ehkb2.ent c1
SEQ B : residue = DEHKAHKAILAYEKGWLAFSLAMLFVFIALIAYTLATH
SEQ B : code = --AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAB--
SEQ B : lcs = --AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAB--
RATIO : lcs/trimmed_seq_a = 0.833 (= 30/ 36), lcs/trimmed_seq_b = 1.000 (= 30/ 30)
SEQ A : name = ./PDBdata/2HA9.pdb c1
SEQ A : residue = ADIRQVTETIAIEEQNFDIRTITGISLLDCIDPDINRAAEKIYQKITTKAANLVAVGDEIAAELGIPIVNKRVSVTPISLIGAATDATDYVVLAKALDKAAKEIGVDFIGGFSALVQKGYQKGDEILINSIPRALAETDKVCSSVNIGSTKSGINTAVADGRIIKETANLSDGVAKLVVFANAVEDNPFAAFHGVGEADVIINVGVSGPGVVKRALEKVRGQSFDVVAETVKKTAFKITRIGQLVGQASERLGVEFGIVDLSLAPTDSVARVLEEGLETVGTHGTTAALALLNDQVKKGGVACNDEGIAAVQNGSLNLEKLEATAICSDIAIPEDTPAETIAAIADEAAIGVINKTTAVRIIPKGKEGDIEFTAPVKVNGASSVDFISRGGQIPAPI
SEQ A : code = --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAG0R00QAAAAAAAAAAAAAAAAAAAAAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------
SEQ A : lcs = --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAA------AAAAAAAAAAAAAAAAAAAAAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------
SEQ B : name = ./pdbstyle-1.73/h8/d2h8pd1.ent c1
SEQ B : residue = LWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ
SEQ B : code = --AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA--
SEQ B : lcs = --AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA--
RATIO : lcs/trimmed_seq_a = 0.833 (= 30/ 36), lcs/trimmed_seq_b = 1.000 (= 30/ 30)
SEQ A : name = ./PDBdata/2HA9.pdb c1
SEQ A : residue = ADIRQVTETIAIEEQNFDIRTITGISLLDCIDPDINRAAEKIYQKITTKAANLVAVGDEIAAELGIPIVNKRVSVTPISLIGAATDATDYVVLAKALDKAAKEIGVDFIGGFSALVQKGYQKGDEILINSIPRALAETDKVCSSVNIGSTKSGINTAVADGRIIKETANLSDGVAKLVVFANAVEDNPFAAFHGVGEADVIINVGVSGPGVVKRALEKVRGQSFDVVAETVKKTAFKITRIGQLVGQASERLGVEFGIVDLSLAPTDSVARVLEEGLETVGTHGTTAALALLNDQVKKGGVACNDEGIAAVQNGSLNLEKLEATAICSDIAIPEDTPAETIAAIADEAAIGVINKTTAVRIIPKGKEGDIEFTAPVKVNGASSVDFISRGGQIPAPI
SEQ A : code = --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAG0R00QAAAAAAAAAAAAAAAAAAAAAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------
SEQ A : lcs = --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAA------AAAAAAAAAAAAAAAAAAAAAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------
SEQ B : name = ./pdbstyle-1.73/q9/d1q90m_.ent c1
SEQ B : residue = EAEFIAGTALTMVGMTLVGLAIGFVLLRVESLVE
SEQ B : code = --AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA--
SEQ B : lcs = --AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA--
RATIO : lcs/trimmed_seq_a = 0.833 (= 30/ 36), lcs/trimmed_seq_b = 1.000 (= 30/ 30)
SEQ A : name = ./PDBdata/2HA9.pdb c1
SEQ A : residue = ADIRQVTETIAIEEQNFDIRTITGISLLDCIDPDINRAAEKIYQKITTKAANLVAVGDEIAAELGIPIVNKRVSVTPISLIGAATDATDYVVLAKALDKAAKEIGVDFIGGFSALVQKGYQKGDEILINSIPRALAETDKVCSSVNIGSTKSGINTAVADGRIIKETANLSDGVAKLVVFANAVEDNPFAAFHGVGEADVIINVGVSGPGVVKRALEKVRGQSFDVVAETVKKTAFKITRIGQLVGQASERLGVEFGIVDLSLAPTDSVARVLEEGLETVGTHGTTAALALLNDQVKKGGVACNDEGIAAVQNGSLNLEKLEATAICSDIAIPEDTPAETIAAIADEAAIGVINKTTAVRIIPKGKEGDIEFTAPVKVNGASSVDFISRGGQIPAPI
SEQ A : code = --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAG0R00QAAAAAAAAAAAAAAAAAAAAAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------
SEQ A : lcs = --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAA------AAAAAAAAAAAAAAAAAAAAAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------
SEQ B : name = ./pdbstyle-1.73/xm/d1xmeb2.ent c1
SEQ B : residue = DEHKAHKAILAYEKGWLAFSLAMLFVFIALIAYT
SEQ B : code = --AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA--
SEQ B : lcs = --AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA--
RATIO : lcs/trimmed_seq_a = 0.853 (= 29/ 34), lcs/trimmed_seq_b = 1.000 (= 29/ 29)
SEQ A : name = ./PDBdata/2HA9.pdb c1
SEQ A : residue = ADIRQVTETIAIEEQNFDIRTITGISLLDCIDPDINRAAEKIYQKITTKAANLVAVGDEIAAELGIPIVNKRVSVTPISLIGAATDATDYVVLAKALDKAAKEIGVDFIGGFSALVQKGYQKGDEILINSIPRALAETDKVCSSVNIGSTKSGINTAVADGRIIKETANLSDGVAKLVVFANAVEDNPFAAFHGVGEADVIINVGVSGPGVVKRALEKVRGQSFDVVAETVKKTAFKITRIGQLVGQASERLGVEFGIVDLSLAPTDSVARVLEEGLETVGTHGTTAALALLNDQVKKGGVACNDEGIAAVQNGSLNLEKLEATAICSDIAIPEDTPAETIAAIADEAAIGVINKTTAVRIIPKGKEGDIEFTAPVKVNGASSVDFISRGGQIPAPI
SEQ A : code = -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG0R00QAAAAAAAAAAAAAAAAAAAAAAAAAAA--------------------------------------------------------------------------------------------------------------------------------------------------
SEQ A : lcs = ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------0R--QAAAAAAAAAAAAAAAAAAAAAAAAAA---------------------------------------------------------------------------------------------------------------------------------------------------
SEQ B : name = ./pdbstyle-1.73/xm/d1xmec1.ent c1
SEQ B : residue = EEKPKGALAVILVLTLTILVFWLGVYAVFFARG
SEQ B : code = --0RQAAAAAAAAAAAAAAAAAAAAAAAAAA--
SEQ B : lcs = --0RQAAAAAAAAAAAAAAAAAAAAAAAAAA--
RATIO : lcs/trimmed_seq_a = 0.848 (= 28/ 33), lcs/trimmed_seq_b = 1.000 (= 28/ 28)
SEQ A : name = ./PDBdata/2HA9.pdb c1
SEQ A : residue = ADIRQVTETIAIEEQNFDIRTITGISLLDCIDPDINRAAEKIYQKITTKAANLVAVGDEIAAELGIPIVNKRVSVTPISLIGAATDATDYVVLAKALDKAAKEIGVDFIGGFSALVQKGYQKGDEILINSIPRALAETDKVCSSVNIGSTKSGINTAVADGRIIKETANLSDGVAKLVVFANAVEDNPFAAFHGVGEADVIINVGVSGPGVVKRALEKVRGQSFDVVAETVKKTAFKITRIGQLVGQASERLGVEFGIVDLSLAPTDSVARVLEEGLETVGTHGTTAALALLNDQVKKGGVACNDEGIAAVQNGSLNLEKLEATAICSDIAIPEDTPAETIAAIADEAAIGVINKTTAVRIIPKGKEGDIEFTAPVKVNGASSVDFISRGGQIPAPI
SEQ A : code = ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------0QAAAAAAAAAAAAAAAAAAAAAAAAAAABRG0----------------------------------------------------------------------------------------------------------------------------------------------
SEQ A : lcs = --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAAAAAAAAAAAAAAAAAAAAAAB-------------------------------------------------------------------------------------------------------------------------------------------------
SEQ B : name = ./pdbstyle-1.73/e7/d2e74f1.ent c1
SEQ B : residue = MTEEMLYAALLSFGLIFVGWGLGVLLLKIQGA
SEQ B : code = --AAAAAAAAAAAAAAAAAAAAAAAAAAAB--
SEQ B : lcs = --AAAAAAAAAAAAAAAAAAAAAAAAAAAB--
RATIO : lcs/trimmed_seq_a = 0.844 (= 27/ 32), lcs/trimmed_seq_b = 1.000 (= 27/ 27)
SEQ A : name = ./PDBdata/2HA9.pdb c1
SEQ A : residue = ADIRQVTETIAIEEQNFDIRTITGISLLDCIDPDINRAAEKIYQKITTKAANLVAVGDEIAAELGIPIVNKRVSVTPISLIGAATDATDYVVLAKALDKAAKEIGVDFIGGFSALVQKGYQKGDEILINSIPRALAETDKVCSSVNIGSTKSGINTAVADGRIIKETANLSDGVAKLVVFANAVEDNPFAAFHGVGEADVIINVGVSGPGVVKRALEKVRGQSFDVVAETVKKTAFKITRIGQLVGQASERLGVEFGIVDLSLAPTDSVARVLEEGLETVGTHGTTAALALLNDQVKKGGVACNDEGIAAVQNGSLNLEKLEATAICSDIAIPEDTPAETIAAIADEAAIGVINKTTAVRIIPKGKEGDIEFTAPVKVNGASSVDFISRGGQIPAPI
SEQ A : code = ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------0QAAAAAAAAAAAAAAAAAAAAAAAAAAABRG-----------------------------------------------------------------------------------------------------------------------------------------------
SEQ A : lcs = --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAAAAAAAAAAAAAAAAAAAAAA--------------------------------------------------------------------------------------------------------------------------------------------------
SEQ B : name = ./pdbstyle-1.73/dp/d1dp5b_.ent c1
SEQ B : residue = NTDQQKVSEIFQSSKEKLQGDAKVVSDAFMM
SEQ B : code = --AAAAAAAAAAAAAAAAAAAAAAAAAAA--
SEQ B : lcs = --AAAAAAAAAAAAAAAAAAAAAAAAAAA--
RATIO : lcs/trimmed_seq_a = 0.833 (= 25/ 30), lcs/trimmed_seq_b = 1.000 (= 25/ 25)
SEQ A : name = ./PDBdata/2HA9.pdb c1
SEQ A : residue = ADIRQVTETIAIEEQNFDIRTITGISLLDCIDPDINRAAEKIYQKITTKAANLVAVGDEIAAELGIPIVNKRVSVTPISLIGAATDATDYVVLAKALDKAAKEIGVDFIGGFSALVQKGYQKGDEILINSIPRALAETDKVCSSVNIGSTKSGINTAVADGRIIKETANLSDGVAKLVVFANAVEDNPFAAFHGVGEADVIINVGVSGPGVVKRALEKVRGQSFDVVAETVKKTAFKITRIGQLVGQASERLGVEFGIVDLSLAPTDSVARVLEEGLETVGTHGTTAALALLNDQVKKGGVACNDEGIAAVQNGSLNLEKLEATAICSDIAIPEDTPAETIAAIADEAAIGVINKTTAVRIIPKGKEGDIEFTAPVKVNGASSVDFISRGGQIPAPI
SEQ A : code = ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------0QAAAAAAAAAAAAAAAAAAAAAAAAAAAB-------------------------------------------------------------------------------------------------------------------------------------------------
SEQ A : lcs = --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAAAAAAAAAAAAAAAAAAAA----------------------------------------------------------------------------------------------------------------------------------------------------
SEQ B : name = ./pdbstyle-1.73/dp/d1dpjb_.ent c1
SEQ B : residue = TDQQKVSEIFQSSKEKLQGDAKVVSDAFK
SEQ B : code = --AAAAAAAAAAAAAAAAAAAAAAAAA--
SEQ B : lcs = --AAAAAAAAAAAAAAAAAAAAAAAAA--
RATIO : lcs/trimmed_seq_a = 0.857 (= 24/ 28), lcs/trimmed_seq_b = 1.000 (= 24/ 24)
SEQ A : name = ./PDBdata/2HA9.pdb c1
SEQ A : residue = ADIRQVTETIAIEEQNFDIRTITGISLLDCIDPDINRAAEKIYQKITTKAANLVAVGDEIAAELGIPIVNKRVSVTPISLIGAATDATDYVVLAKALDKAAKEIGVDFIGGFSALVQKGYQKGDEILINSIPRALAETDKVCSSVNIGSTKSGINTAVADGRIIKETANLSDGVAKLVVFANAVEDNPFAAFHGVGEADVIINVGVSGPGVVKRALEKVRGQSFDVVAETVKKTAFKITRIGQLVGQASERLGVEFGIVDLSLAPTDSVARVLEEGLETVGTHGTTAALALLNDQVKKGGVACNDEGIAAVQNGSLNLEKLEATAICSDIAIPEDTPAETIAAIADEAAIGVINKTTAVRIIPKGKEGDIEFTAPVKVNGASSVDFISRGGQIPAPI
SEQ A : code = --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G0R00QAAAAAAAAAAAAAAAAAAAAAA-------------------------------------------------------------------------------------------------------------------------------------------------------
SEQ A : lcs = -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------00QAAAAAAAAAAAAAAAAAAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------
SEQ B : name = ./pdbstyle-1.73/l9/d1l9bh2.ent c1
SEQ B : residue = GNFDLASLAIYSFWIFLAGLIYYLQTEN
SEQ B : code = --00QAAAAAAAAAAAAAAAAAAAAA--
SEQ B : lcs = --00QAAAAAAAAAAAAAAAAAAAAA--
RATIO : lcs/trimmed_seq_a = 0.840 (= 21/ 25), lcs/trimmed_seq_b = 1.000 (= 21/ 21)
SEQ A : name = ./PDBdata/2HA9.pdb c1
SEQ A : residue = ADIRQVTETIAIEEQNFDIRTITGISLLDCIDPDINRAAEKIYQKITTKAANLVAVGDEIAAELGIPIVNKRVSVTPISLIGAATDATDYVVLAKALDKAAKEIGVDFIGGFSALVQKGYQKGDEILINSIPRALAETDKVCSSVNIGSTKSGINTAVADGRIIKETANLSDGVAKLVVFANAVEDNPFAAFHGVGEADVIINVGVSGPGVVKRALEKVRGQSFDVVAETVKKTAFKITRIGQLVGQASERLGVEFGIVDLSLAPTDSVARVLEEGLETVGTHGTTAALALLNDQVKKGGVACNDEGIAAVQNGSLNLEKLEATAICSDIAIPEDTPAETIAAIADEAAIGVINKTTAVRIIPKGKEGDIEFTAPVKVNGASSVDFISRGGQIPAPI
SEQ A : code = --------------------------------------AAAAAAAAAAABQ3QAAAAAAAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
SEQ A : lcs = --------------------------------------AAAAAAAAAAA----AAAAAAAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
SEQ B : name = ./pdbstyle-1.73/rz/d1rzhh2.ent c1
SEQ B : residue = DLASLAIYSFWIFLAGLIYYLQTEN
SEQ B : code = --AAAAAAAAAAAAAAAAAAAAA--
SEQ B : lcs = --AAAAAAAAAAAAAAAAAAAAA--
// [NOTE]: A trimmed sequence is the sequence obtained by removing residues of
// irregular 5-tile codes, such as '-', where regular 5-tile codes are
// {0, A, R, Q, B, G, 1, O, H, 3, J, 8, P, 9, 2, I}. Irregular 5-tile
// codes are ommited during the LCS computation and LCSs consist of
// regular 5-tile codes only.