INPUT SEQUENCE (A) : data/2HA9.code INPUT SEQUENCE (B) : data/target_ASTRAL173.code SUBSEQUENCE OPTION : Subsequence comparison (|compare window|/|the shorter seq.| = 1.20) SORT POLICY : Domain search of the key protein EXEC OPTION : [Length only] Hirschberg's algorithm RATIO TABLE : range | frequency RATIO TABLE : --------------|-------------- RATIO RABLE : [0.9, 1.0] | 77 RATIO TABLE : [0.8, 0.9) | 940 RATIO TABLE : [0.7, 0.8) | 17575 RATIO TABLE : [0.6, 0.7) | 85998 RATIO TABLE : [0.5, 0.6) | 70046 RATIO TABLE : [0.4, 0.5) | 28582 RATIO TABLE : [0.3, 0.4) | 7902 RATIO TABLE : [0.2, 0.3) | 2637 RATIO TABLE : [0.1, 0.2) | 718 RATIO TABLE : [0.0, 0.1) | 333 RATIO : lcs/trimmed_seq_a = 0.850 (= 34/ 40), lcs/trimmed_seq_b = 1.000 (= 34/ 34) SEQ A : name = ./PDBdata/2HA9.pdb c1 SEQ A : residue = ADIRQVTETIAIEEQNFDIRTITGISLLDCIDPDINRAAEKIYQKITTKAANLVAVGDEIAAELGIPIVNKRVSVTPISLIGAATDATDYVVLAKALDKAAKEIGVDFIGGFSALVQKGYQKGDEILINSIPRALAETDKVCSSVNIGSTKSGINTAVADGRIIKETANLSDGVAKLVVFANAVEDNPFAAFHGVGEADVIINVGVSGPGVVKRALEKVRGQSFDVVAETVKKTAFKITRIGQLVGQASERLGVEFGIVDLSLAPTDSVARVLEEGLETVGTHGTTAALALLNDQVKKGGVACNDEGIAAVQNGSLNLEKLEATAICSDIAIPEDTPAETIAAIADEAAIGVINKTTAVRIIPKGKEGDIEFTAPVKVNGASSVDFISRGGQIPAPI SEQ A : code = --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAG0R00QAAAAAAAAAAAAAAAAAAAAAAAAAAAB------------------------------------------------------------------------------------------------------------------------------------------------- SEQ A : lcs = --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAA------AAAAAAAAAAAAAAAAAAAAAAAAAAAB------------------------------------------------------------------------------------------------------------------------------------------------- SEQ B : name = ./pdbstyle-1.73/eh/d1ehkb2.ent c1 SEQ B : residue = DEHKAHKAILAYEKGWLAFSLAMLFVFIALIAYTLATH SEQ B : code = --AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAB-- SEQ B : lcs = --AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAB-- RATIO : lcs/trimmed_seq_a = 0.833 (= 30/ 36), lcs/trimmed_seq_b = 1.000 (= 30/ 30) SEQ A : name = ./PDBdata/2HA9.pdb c1 SEQ A : residue = ADIRQVTETIAIEEQNFDIRTITGISLLDCIDPDINRAAEKIYQKITTKAANLVAVGDEIAAELGIPIVNKRVSVTPISLIGAATDATDYVVLAKALDKAAKEIGVDFIGGFSALVQKGYQKGDEILINSIPRALAETDKVCSSVNIGSTKSGINTAVADGRIIKETANLSDGVAKLVVFANAVEDNPFAAFHGVGEADVIINVGVSGPGVVKRALEKVRGQSFDVVAETVKKTAFKITRIGQLVGQASERLGVEFGIVDLSLAPTDSVARVLEEGLETVGTHGTTAALALLNDQVKKGGVACNDEGIAAVQNGSLNLEKLEATAICSDIAIPEDTPAETIAAIADEAAIGVINKTTAVRIIPKGKEGDIEFTAPVKVNGASSVDFISRGGQIPAPI SEQ A : code = --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAG0R00QAAAAAAAAAAAAAAAAAAAAAAAA----------------------------------------------------------------------------------------------------------------------------------------------------- SEQ A : lcs = --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAA------AAAAAAAAAAAAAAAAAAAAAAAA----------------------------------------------------------------------------------------------------------------------------------------------------- SEQ B : name = ./pdbstyle-1.73/h8/d2h8pd1.ent c1 SEQ B : residue = LWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ SEQ B : code = --AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-- SEQ B : lcs = --AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-- RATIO : lcs/trimmed_seq_a = 0.833 (= 30/ 36), lcs/trimmed_seq_b = 1.000 (= 30/ 30) SEQ A : name = ./PDBdata/2HA9.pdb c1 SEQ A : residue = ADIRQVTETIAIEEQNFDIRTITGISLLDCIDPDINRAAEKIYQKITTKAANLVAVGDEIAAELGIPIVNKRVSVTPISLIGAATDATDYVVLAKALDKAAKEIGVDFIGGFSALVQKGYQKGDEILINSIPRALAETDKVCSSVNIGSTKSGINTAVADGRIIKETANLSDGVAKLVVFANAVEDNPFAAFHGVGEADVIINVGVSGPGVVKRALEKVRGQSFDVVAETVKKTAFKITRIGQLVGQASERLGVEFGIVDLSLAPTDSVARVLEEGLETVGTHGTTAALALLNDQVKKGGVACNDEGIAAVQNGSLNLEKLEATAICSDIAIPEDTPAETIAAIADEAAIGVINKTTAVRIIPKGKEGDIEFTAPVKVNGASSVDFISRGGQIPAPI SEQ A : code = --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAG0R00QAAAAAAAAAAAAAAAAAAAAAAAA----------------------------------------------------------------------------------------------------------------------------------------------------- SEQ A : lcs = --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAA------AAAAAAAAAAAAAAAAAAAAAAAA----------------------------------------------------------------------------------------------------------------------------------------------------- SEQ B : name = ./pdbstyle-1.73/q9/d1q90m_.ent c1 SEQ B : residue = EAEFIAGTALTMVGMTLVGLAIGFVLLRVESLVE SEQ B : code = --AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-- SEQ B : lcs = --AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-- RATIO : lcs/trimmed_seq_a = 0.833 (= 30/ 36), lcs/trimmed_seq_b = 1.000 (= 30/ 30) SEQ A : name = ./PDBdata/2HA9.pdb c1 SEQ A : residue = ADIRQVTETIAIEEQNFDIRTITGISLLDCIDPDINRAAEKIYQKITTKAANLVAVGDEIAAELGIPIVNKRVSVTPISLIGAATDATDYVVLAKALDKAAKEIGVDFIGGFSALVQKGYQKGDEILINSIPRALAETDKVCSSVNIGSTKSGINTAVADGRIIKETANLSDGVAKLVVFANAVEDNPFAAFHGVGEADVIINVGVSGPGVVKRALEKVRGQSFDVVAETVKKTAFKITRIGQLVGQASERLGVEFGIVDLSLAPTDSVARVLEEGLETVGTHGTTAALALLNDQVKKGGVACNDEGIAAVQNGSLNLEKLEATAICSDIAIPEDTPAETIAAIADEAAIGVINKTTAVRIIPKGKEGDIEFTAPVKVNGASSVDFISRGGQIPAPI SEQ A : code = --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAG0R00QAAAAAAAAAAAAAAAAAAAAAAAA----------------------------------------------------------------------------------------------------------------------------------------------------- SEQ A : lcs = --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAA------AAAAAAAAAAAAAAAAAAAAAAAA----------------------------------------------------------------------------------------------------------------------------------------------------- SEQ B : name = ./pdbstyle-1.73/xm/d1xmeb2.ent c1 SEQ B : residue = DEHKAHKAILAYEKGWLAFSLAMLFVFIALIAYT SEQ B : code = --AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-- SEQ B : lcs = --AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-- RATIO : lcs/trimmed_seq_a = 0.853 (= 29/ 34), lcs/trimmed_seq_b = 1.000 (= 29/ 29) SEQ A : name = ./PDBdata/2HA9.pdb c1 SEQ A : residue = ADIRQVTETIAIEEQNFDIRTITGISLLDCIDPDINRAAEKIYQKITTKAANLVAVGDEIAAELGIPIVNKRVSVTPISLIGAATDATDYVVLAKALDKAAKEIGVDFIGGFSALVQKGYQKGDEILINSIPRALAETDKVCSSVNIGSTKSGINTAVADGRIIKETANLSDGVAKLVVFANAVEDNPFAAFHGVGEADVIINVGVSGPGVVKRALEKVRGQSFDVVAETVKKTAFKITRIGQLVGQASERLGVEFGIVDLSLAPTDSVARVLEEGLETVGTHGTTAALALLNDQVKKGGVACNDEGIAAVQNGSLNLEKLEATAICSDIAIPEDTPAETIAAIADEAAIGVINKTTAVRIIPKGKEGDIEFTAPVKVNGASSVDFISRGGQIPAPI SEQ A : code = -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG0R00QAAAAAAAAAAAAAAAAAAAAAAAAAAA-------------------------------------------------------------------------------------------------------------------------------------------------- SEQ A : lcs = ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------0R--QAAAAAAAAAAAAAAAAAAAAAAAAAA--------------------------------------------------------------------------------------------------------------------------------------------------- SEQ B : name = ./pdbstyle-1.73/xm/d1xmec1.ent c1 SEQ B : residue = EEKPKGALAVILVLTLTILVFWLGVYAVFFARG SEQ B : code = --0RQAAAAAAAAAAAAAAAAAAAAAAAAAA-- SEQ B : lcs = --0RQAAAAAAAAAAAAAAAAAAAAAAAAAA-- RATIO : lcs/trimmed_seq_a = 0.848 (= 28/ 33), lcs/trimmed_seq_b = 1.000 (= 28/ 28) SEQ A : name = ./PDBdata/2HA9.pdb c1 SEQ A : residue = ADIRQVTETIAIEEQNFDIRTITGISLLDCIDPDINRAAEKIYQKITTKAANLVAVGDEIAAELGIPIVNKRVSVTPISLIGAATDATDYVVLAKALDKAAKEIGVDFIGGFSALVQKGYQKGDEILINSIPRALAETDKVCSSVNIGSTKSGINTAVADGRIIKETANLSDGVAKLVVFANAVEDNPFAAFHGVGEADVIINVGVSGPGVVKRALEKVRGQSFDVVAETVKKTAFKITRIGQLVGQASERLGVEFGIVDLSLAPTDSVARVLEEGLETVGTHGTTAALALLNDQVKKGGVACNDEGIAAVQNGSLNLEKLEATAICSDIAIPEDTPAETIAAIADEAAIGVINKTTAVRIIPKGKEGDIEFTAPVKVNGASSVDFISRGGQIPAPI SEQ A : code = ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------0QAAAAAAAAAAAAAAAAAAAAAAAAAAABRG0---------------------------------------------------------------------------------------------------------------------------------------------- SEQ A : lcs = --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAAAAAAAAAAAAAAAAAAAAAAB------------------------------------------------------------------------------------------------------------------------------------------------- SEQ B : name = ./pdbstyle-1.73/e7/d2e74f1.ent c1 SEQ B : residue = MTEEMLYAALLSFGLIFVGWGLGVLLLKIQGA SEQ B : code = --AAAAAAAAAAAAAAAAAAAAAAAAAAAB-- SEQ B : lcs = --AAAAAAAAAAAAAAAAAAAAAAAAAAAB-- RATIO : lcs/trimmed_seq_a = 0.844 (= 27/ 32), lcs/trimmed_seq_b = 1.000 (= 27/ 27) SEQ A : name = ./PDBdata/2HA9.pdb c1 SEQ A : residue = ADIRQVTETIAIEEQNFDIRTITGISLLDCIDPDINRAAEKIYQKITTKAANLVAVGDEIAAELGIPIVNKRVSVTPISLIGAATDATDYVVLAKALDKAAKEIGVDFIGGFSALVQKGYQKGDEILINSIPRALAETDKVCSSVNIGSTKSGINTAVADGRIIKETANLSDGVAKLVVFANAVEDNPFAAFHGVGEADVIINVGVSGPGVVKRALEKVRGQSFDVVAETVKKTAFKITRIGQLVGQASERLGVEFGIVDLSLAPTDSVARVLEEGLETVGTHGTTAALALLNDQVKKGGVACNDEGIAAVQNGSLNLEKLEATAICSDIAIPEDTPAETIAAIADEAAIGVINKTTAVRIIPKGKEGDIEFTAPVKVNGASSVDFISRGGQIPAPI SEQ A : code = ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------0QAAAAAAAAAAAAAAAAAAAAAAAAAAABRG----------------------------------------------------------------------------------------------------------------------------------------------- SEQ A : lcs = --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAAAAAAAAAAAAAAAAAAAAAA-------------------------------------------------------------------------------------------------------------------------------------------------- SEQ B : name = ./pdbstyle-1.73/dp/d1dp5b_.ent c1 SEQ B : residue = NTDQQKVSEIFQSSKEKLQGDAKVVSDAFMM SEQ B : code = --AAAAAAAAAAAAAAAAAAAAAAAAAAA-- SEQ B : lcs = --AAAAAAAAAAAAAAAAAAAAAAAAAAA-- RATIO : lcs/trimmed_seq_a = 0.833 (= 25/ 30), lcs/trimmed_seq_b = 1.000 (= 25/ 25) SEQ A : name = ./PDBdata/2HA9.pdb c1 SEQ A : residue = ADIRQVTETIAIEEQNFDIRTITGISLLDCIDPDINRAAEKIYQKITTKAANLVAVGDEIAAELGIPIVNKRVSVTPISLIGAATDATDYVVLAKALDKAAKEIGVDFIGGFSALVQKGYQKGDEILINSIPRALAETDKVCSSVNIGSTKSGINTAVADGRIIKETANLSDGVAKLVVFANAVEDNPFAAFHGVGEADVIINVGVSGPGVVKRALEKVRGQSFDVVAETVKKTAFKITRIGQLVGQASERLGVEFGIVDLSLAPTDSVARVLEEGLETVGTHGTTAALALLNDQVKKGGVACNDEGIAAVQNGSLNLEKLEATAICSDIAIPEDTPAETIAAIADEAAIGVINKTTAVRIIPKGKEGDIEFTAPVKVNGASSVDFISRGGQIPAPI SEQ A : code = ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------0QAAAAAAAAAAAAAAAAAAAAAAAAAAAB------------------------------------------------------------------------------------------------------------------------------------------------- SEQ A : lcs = --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAAAAAAAAAAAAAAAAAAAA---------------------------------------------------------------------------------------------------------------------------------------------------- SEQ B : name = ./pdbstyle-1.73/dp/d1dpjb_.ent c1 SEQ B : residue = TDQQKVSEIFQSSKEKLQGDAKVVSDAFK SEQ B : code = --AAAAAAAAAAAAAAAAAAAAAAAAA-- SEQ B : lcs = --AAAAAAAAAAAAAAAAAAAAAAAAA-- RATIO : lcs/trimmed_seq_a = 0.857 (= 24/ 28), lcs/trimmed_seq_b = 1.000 (= 24/ 24) SEQ A : name = ./PDBdata/2HA9.pdb c1 SEQ A : residue = ADIRQVTETIAIEEQNFDIRTITGISLLDCIDPDINRAAEKIYQKITTKAANLVAVGDEIAAELGIPIVNKRVSVTPISLIGAATDATDYVVLAKALDKAAKEIGVDFIGGFSALVQKGYQKGDEILINSIPRALAETDKVCSSVNIGSTKSGINTAVADGRIIKETANLSDGVAKLVVFANAVEDNPFAAFHGVGEADVIINVGVSGPGVVKRALEKVRGQSFDVVAETVKKTAFKITRIGQLVGQASERLGVEFGIVDLSLAPTDSVARVLEEGLETVGTHGTTAALALLNDQVKKGGVACNDEGIAAVQNGSLNLEKLEATAICSDIAIPEDTPAETIAAIADEAAIGVINKTTAVRIIPKGKEGDIEFTAPVKVNGASSVDFISRGGQIPAPI SEQ A : code = --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G0R00QAAAAAAAAAAAAAAAAAAAAAA------------------------------------------------------------------------------------------------------------------------------------------------------- SEQ A : lcs = -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------00QAAAAAAAAAAAAAAAAAAAAA-------------------------------------------------------------------------------------------------------------------------------------------------------- SEQ B : name = ./pdbstyle-1.73/l9/d1l9bh2.ent c1 SEQ B : residue = GNFDLASLAIYSFWIFLAGLIYYLQTEN SEQ B : code = --00QAAAAAAAAAAAAAAAAAAAAA-- SEQ B : lcs = --00QAAAAAAAAAAAAAAAAAAAAA-- RATIO : lcs/trimmed_seq_a = 0.840 (= 21/ 25), lcs/trimmed_seq_b = 1.000 (= 21/ 21) SEQ A : name = ./PDBdata/2HA9.pdb c1 SEQ A : residue = ADIRQVTETIAIEEQNFDIRTITGISLLDCIDPDINRAAEKIYQKITTKAANLVAVGDEIAAELGIPIVNKRVSVTPISLIGAATDATDYVVLAKALDKAAKEIGVDFIGGFSALVQKGYQKGDEILINSIPRALAETDKVCSSVNIGSTKSGINTAVADGRIIKETANLSDGVAKLVVFANAVEDNPFAAFHGVGEADVIINVGVSGPGVVKRALEKVRGQSFDVVAETVKKTAFKITRIGQLVGQASERLGVEFGIVDLSLAPTDSVARVLEEGLETVGTHGTTAALALLNDQVKKGGVACNDEGIAAVQNGSLNLEKLEATAICSDIAIPEDTPAETIAAIADEAAIGVINKTTAVRIIPKGKEGDIEFTAPVKVNGASSVDFISRGGQIPAPI SEQ A : code = --------------------------------------AAAAAAAAAAABQ3QAAAAAAAAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SEQ A : lcs = --------------------------------------AAAAAAAAAAA----AAAAAAAAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SEQ B : name = ./pdbstyle-1.73/rz/d1rzhh2.ent c1 SEQ B : residue = DLASLAIYSFWIFLAGLIYYLQTEN SEQ B : code = --AAAAAAAAAAAAAAAAAAAAA-- SEQ B : lcs = --AAAAAAAAAAAAAAAAAAAAA-- // [NOTE]: A trimmed sequence is the sequence obtained by removing residues of // irregular 5-tile codes, such as '-', where regular 5-tile codes are // {0, A, R, Q, B, G, 1, O, H, 3, J, 8, P, 9, 2, I}. Irregular 5-tile // codes are ommited during the LCS computation and LCSs consist of // regular 5-tile codes only.