INPUT SEQUENCE (A) : data/2HG6.code
INPUT SEQUENCE (B) : data/target_ASTRAL.code
SUBSEQUENCE OPTION : Subsequence comparison  (|compare window|/|the shorter seq.| = 1.10)
EXEC OPTION : [Length only] Hirschberg's algorithm



<Frequency table of lcs/trimmed_seq_a  (global)>
RATIO TABLE :          range     |   frequency
RATIO TABLE :      --------------|--------------
RATIO RABLE :       [0.9,  1.0]  |          0
RATIO TABLE :       [0.8,  0.9)  |          0
RATIO TABLE :       [0.7,  0.8)  |       1890
RATIO TABLE :       [0.6,  0.7)  |      57469
RATIO TABLE :       [0.5,  0.6)  |      42794
RATIO TABLE :       [0.4,  0.5)  |       5522
RATIO TABLE :       [0.3,  0.4)  |       5705
RATIO TABLE :       [0.2,  0.3)  |       7580
RATIO TABLE :       [0.1,  0.2)  |      12069
RATIO TABLE :       [0.0,  0.1)  |       2213
</Frequency table of lcs/trimmed_seq_a  (global)>

 <A best result (9386-th target  2-th window  window_width = 112)>
RATIO :  lcs/trimmed_seq_a = 0.775 (=   79/  102), lcs/trimmed_seq_b = 0.705 (=   79/  112)
SEQ A : name    = ./PDBdata/2HG6.pdb c1
SEQ A : residue = MSITSTDICQAADALKGFVGFNRKTGRYIVRFSEDSFGMDVADDSITPTSEFVWSSVRDDVMRLGREQLQILLEQNINERLNIGEPLLVYLRRQDLPEITAQRQLR
SEQ A : code    = --000QAAAAAAABG0000000QBRRG0000RGQABG0QBG0QABG00QAAABG00R0RRG0000QAAAAAAAABR0QAABR00QAAAAAB000QGR0000000--
SEQ A : lcs     = ---00QAAAAAAAB-0000000QBR-G0000--QABG0---0Q-BG00QAAA-G00-0---0000QAAAAAA--BR0-----00QAAAAAB00-QG-0000000--
SEQ B : name    = ./pdbstyle-1.71/qz/d1qzua_.ent c1
SEQ B : residue = MERKFHVLVGVTGSVAALKLPLLVSKLLGLEVAVVTTERAKHFYSPQDIPVTLYSDADEWEMWKSRSDPVLHIDLRRWADLLLVAPLDANTLGKVASGICDNLLTCVMRAWDRSKPLLFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPVGTIVDKVKEV
SEQ B : code    = ------------00QAAABQAAAAAABPJ00000000QAAAAG00QABGRG0000QAAAAABG00QBG00QAAAAAAGGR00003000Q9AAAAAABR00R0QAAAAAAB00QBG000000000------------------------------------
SEQ B : lcs     = ------------00QAAA--AAAA--B--0000000-Q---------B-RG0000Q----ABG00QBG00QAAA---G--0000-000Q-AAAAAABR00-0QAAAAA-B00Q-G0000000--------------------------------------
 </A best result (9386-th target  2-th window  window_width = 112)>


// [NOTE]: A trimmed sequence is the sequence obtained by removing residues of
//         irregular 5-tile codes, such as '-', where regular 5-tile codes are
//         {0, A, R, Q, B, G, 1, O, H, 3, J, 8, P, 9, 2, I}. Irregular 5-tile
//         codes are ommited during the LCS computation and LCSs consist of
//         regular 5-tile codes only.