INPUT SEQUENCE (A) : data/2HG6.code
INPUT SEQUENCE (B) : data/target_ASTRAL.code
SUBSEQUENCE OPTION : Subsequence comparison (|compare window|/|the shorter seq.| = 1.20)
EXEC OPTION : [Length only] Hirschberg's algorithm
RATIO TABLE : range | frequency
RATIO TABLE : --------------|--------------
RATIO RABLE : [0.9, 1.0] | 0
RATIO TABLE : [0.8, 0.9) | 1
RATIO TABLE : [0.7, 0.8) | 4065
RATIO TABLE : [0.6, 0.7) | 34652
RATIO TABLE : [0.5, 0.6) | 15976
RATIO TABLE : [0.4, 0.5) | 2680
RATIO TABLE : [0.3, 0.4) | 3024
RATIO TABLE : [0.2, 0.3) | 3676
RATIO TABLE : [0.1, 0.2) | 5185
RATIO TABLE : [0.0, 0.1) | 779
RATIO : lcs/trimmed_seq_a = 0.804 (= 82/ 102), lcs/trimmed_seq_b = 0.672 (= 82/ 122)
SEQ A : name = ./PDBdata/2HG6.pdb c1
SEQ A : residue = MSITSTDICQAADALKGFVGFNRKTGRYIVRFSEDSFGMDVADDSITPTSEFVWSSVRDDVMRLGREQLQILLEQNINERLNIGEPLLVYLRRQDLPEITAQRQLR
SEQ A : code = --000QAAAAAAABG0000000QBRRG0000RGQABG0QBG0QABG00QAAABG00R0RRG0000QAAAAAAAABR0QAABR00QAAAAAB000QGR0000000--
SEQ A : lcs = --000QAAAAAAAB-0000000QB---0----GQABG0QBG0----00QAAABG00-0R--000-QAAAAAA--BR0QAABR00QAAAAAB00-QG-0000000--
SEQ B : name = ./pdbstyle-1.71/mv/d1mvla_.ent c1
SEQ B : residue = KPRVLLAASGSVAAIKFGNLCHCFTEWAEVRAVVTKSSLHFLDKLSLPQEVTLYTDEDEWSSWNKIGDPVLHIELRRWADVLVIAPLSANTLGKIAGGLCDNLLTCIIRAWDYTKPLFVAPAMNTLMWNNPFTERHLLSLDELGITLIPPIKNGAMAEPSLIYSTVRLFWESQ
SEQ B : code = --000000000QAAABQAAAAAAHQAB0O000000QAAAB0G0QABG0QBG0000QAAAAABG000R000QAAAAAABGR00000O00QAAAAAAABR00O0QAAAAAAB00QBG000000000-------------------------------------------------
SEQ B : lcs = --000-----------QAAAAAA--AB0-000000Q---B0G-QABG0QBG000-QAAA--BG000R000QAAAAAAB-R0-------Q-----AABR00--QAAAAA-B00Q-G0000000---------------------------------------------------
// [NOTE]: A trimmed sequence is the sequence obtained by removing residues of
// irregular 5-tile codes, such as '-', where regular 5-tile codes are
// {0, A, R, Q, B, G, 1, O, H, 3, J, 8, P, 9, 2, I}. Irregular 5-tile
// codes are ommited during the LCS computation and LCSs consist of
// regular 5-tile codes only.