INPUT SEQUENCE (A) : data/2HG6.code
INPUT SEQUENCE (B) : data/target_ASTRAL.code
SUBSEQUENCE OPTION : Whole sequence comparison
EXEC OPTION : [Length only] Naive Dynamic Programing



<Frequency table of lcs/trimmed_seq_a>
RATIO TABLE :          range     |   frequency
RATIO TABLE :      --------------|--------------
RATIO RABLE :       [0.9,  1.0]  |       1433
RATIO TABLE :       [0.8,  0.9)  |       1766
RATIO TABLE :       [0.7,  0.8)  |       1902
RATIO TABLE :       [0.6,  0.7)  |       2460
RATIO TABLE :       [0.5,  0.6)  |       3233
RATIO TABLE :       [0.4,  0.5)  |       1298
RATIO TABLE :       [0.3,  0.4)  |        543
RATIO TABLE :       [0.2,  0.3)  |        330
RATIO TABLE :       [0.1,  0.2)  |         39
RATIO TABLE :       [0.0,  0.1)  |          1
</Frequency table of lcs/trimmed_seq_a>

 <A best target (9024-th)>
RATIO :  lcs/trimmed_seq_a = 1.000 (=  102/  102), lcs/trimmed_seq_b = 0.232 (=  102/  439)
SEQ A : name    = ./PDBdata/2HG6.pdb c1
SEQ A : residue = MSITSTDICQAADALKGFVGFNRKTGRYIVRFSEDSFGMDVADDSITPTSEFVWSSVRDDVMRLGREQLQILLEQNINERLNIGEPLLVYLRRQDLPEITAQRQLR
SEQ A : code    = --000QAAAAAAABG0000000QBRRG0000RGQABG0QBG0QABG00QAAABG00R0RRG0000QAAAAAAAABR0QAABR00QAAAAAB000QGR0000000--
SEQ A : lcs     = --000QAAAAAAABG0000000QBRRG0000RGQABG0QBG0QABG00QAAABG00R0RRG0000QAAAAAAAABR0QAABR00QAAAAAB000QGR0000000--
SEQ B : name    = ./pdbstyle-1.71/qb/d1qba_3.ent c1
SEQ B : residue = FPYRGIFLDVARNFHKKDAVLRLLDQMAAYKLNKFHFHLSDDEGWRIEIPGLPELTEVGGQRCHDLSETTCLLPQYGQGPDVYGGFFSRQDYIDIIKYAQARQIEVIPEIDMPAHARAAVVSMEARYKKLHAAGKEQEANEFRLVDPTDTSNTTSVQFFNRQSYLNPCLDSSQRFVDKVIGEIAQMHKEAGQPIKTWHFGGDEAKNIRLGAGYTDKAKPEPGKGIIDQGNEDKPWAKSQVCQTMIKEGKVADMEHLPSYFGQEVSKLVKAHGIDRMQAWQDGLKDAESSKAFATSRVGVNFWDTLYWGGFDSVNDWANKGYEVVVSNPDYVYMDFPYEVNPDERGYYWGTRFSDERKVFSFAPDNMPQNAETSVDRDGNHFNAKSDKPWPGAYGLSAQLWSETQRTDPQMEYMIFPRALSVAERSWHRAGWEQDYRAGREYKG
SEQ B : code    = --G000000QHB0000QAAAAAAAAAAAABR000000RR00QG0000000QGQABAB1ABG00R0QBRRB000000RR0RG0000000QAAAAAAAAAAAABR000000R00O1RGQAAAAAAAAAAAAAAABRRQAAABRR0RG0QBGR00000QBR00QABG00QBGQAAAAAAAAAAAAAAAAAAABRG00R000R0R0RRG0QABGQBG00QB0000RG000RQABG000RQBGQAAAAAAABRR0R0QABQAAAAAAAAAAAAAABR00G0000QAABQBGR0QABGRGRG000R00001AB0QA1AAAAAAAB00000000QB000QBG0R0R0QBG0000QB0R000QAAAABG0QA0QAAAAA0000QBR0000000RG00R00R00000000RBRR0QAAAAAABGPAAAAAAAAA0000QBB00000R000--
SEQ B : lcs     = -------------000Q-----AAAAAAAB------------G0000000Q---B----------------------R-RG0000-----------------------------RGQA--------------B-----------G0QBG----------0QABG00Q---AAA----------------B-G00R0--R-R---G0-------00--0---------Q----------------------------------AAAAAAAABR0------QAAB---R0--------0-----------QA---------------------------------------------AAAAB-0--0------0---Q----------G--R00-00000---------------------------------------------
 </A best target (9024-th)>


// [NOTE]: A trimmed sequence is the sequence obtained by removing residues of
//         irregular 5-tile codes, such as '-', where regular 5-tile codes are
//         {0, A, R, Q, B, G, 1, O, H, 3, J, 8, P, 9, 2, I}. Irregular 5-tile
//         codes are ommited during the LCS computation and LCSs consist of
//         regular 5-tile codes only.