INPUT SEQUENCE (A) : data/2HG6.code INPUT SEQUENCE (B) : data/target_ASTRAL.code SUBSEQUENCE OPTION : Whole sequence comparison EXEC OPTION : Naive Dynamic Programing RATIO : lcs/trimmed_seq_a = 0.941 (= 96/ 102), lcs/trimmed_seq_b = 0.297 (= 96/ 323) SEQ A : name = ./PDBdata/2HG6.pdb c1 SEQ A : residue = MSITSTDICQAADALKGFVGFNRKTGRYIVRFSEDSFGMDVADDSITPTSEFVWSSVRDDVMRLGREQLQILLEQNINERLNIGEPLLVYLRRQDLPEITAQRQLR SEQ A : code = --000QAAAAAAABG0000000QBRRG0000RGQABG0QBG0QABG00QAAABG00R0RRG0000QAAAAAAAABR0QAABR00QAAAAAB000QGR0000000-- SEQ A : lcs = --000QAAAAAAABG0000000QBRRG0000RGQAB-0QB-0Q-BG0-QAAABG00R0RRG0000QAAAAAAAABR0QAABR00QAAAAAB00-QG-0000000-- SEQ B : name = ./pdbstyle-1.71/2a/d12asa_.ent c1 SEQ B : residue = AYIAKQRQISFVKSHFSRQLEERLGLIEVQAPILSRVGDGTQDNLSGAEKAVQVKVKALPDAQFEVVHSLAKWKRQTLGQHDFSAGEGLYTHMKALRPDEDRLSPLHSVYVDQWDWERVMGDGERQFSTLKSTVEAIWAGIKATEAAVSEEFGLAPFLPDQIHFVHSQELLSRYPDLDAKGRERAIAKDLGAVFLVGIGGKLSDGHRHDVRAPDYDDWSTPSELGHAGLNGDILVWNPVLEDAFELSSMGIRVDADTLKHQLALTGDEDRLELEWHQALLRGEMPQTIGGGIGQSRLTMLLLQLPHIGQVQAGVWPAAVRESVPSLL SEQ B : code = --AAAAAAAAAAAAAAAAAAAAB0R0000000RG000PGRRGRR0RQBG0000000QABQBG00000R0RQAAAAAAAAABR000RG0000R00000QB0R000R000RG000R00000000RRRGQAAAAAAAAAAAAAAAAAAAAAB1BBR000000R000000QAAAAAB0QBG0QAAAAAAAAAB0R00R00000000RGRG0R00003G000RG000QBRG00RG0000000QABRG000000000000QAAAAAAAAABR0QAAABGQAAAAAABRRG000000000QAAAAAAABR0R0QAABG00000QAAAA0G0R-- SEQ B : lcs = -----------------------------------------------------------------00-0-QAAAAAAA--B-----G0000-000--QB-R---R----G000-0---------RGQA--------------------B----0------------Q-----B0QBG0QAAA------B--------------G--0-0--------R-0----R---RG--------------------0000QAAAAAAAA-BR0QAA-B---------R---------00QAAAAA--B-0-0Q---G00000-----0-0--- RATIO : lcs/trimmed_seq_a = 0.520 (= 53/ 102), lcs/trimmed_seq_b = 0.500 (= 53/ 106) SEQ A : name = ./PDBdata/2HG6.pdb c1 SEQ A : residue = MSITSTDICQAADALKGFVGFNRKTGRYIVRFSEDSFGMDVADDSITPTSEFVWSSVRDDVMRLGREQLQILLEQNINERLNIGEPLLVYLRRQDLPEITAQRQLR SEQ A : code = --000QAAAAAAABG0000000QBRRG0000RGQABG0QBG0QABG00QAAABG00R0RRG0000QAAAAAAAABR0QAABR00QAAAAAB000QGR0000000-- SEQ A : lcs = --000----------0000000--RR-0000R-----0---0----00-----G00R0RR-0000----------R0Q--BR00Q----AB000--R0000000-- SEQ B : name = ./pdbstyle-1.71/2c/d32c2a1.ent c1 SEQ B : residue = DIVLTQSPASLAVSLGQRATISCRASKSVSTSGYGYMHWNQQKPGQPPRLLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVEEEDAATYYCQHIREPLTFGGGTKLEIK SEQ B : code = --00000O000000R00RR000000R0018100RG00000000R0G0000000RR0000RG01QBG00000R00000000RR0QABGG0000001R1R0000R00000-- SEQ B : lcs = -----00-000000-00RR0000--R00---00-G00------R--------0RR0000R-0-QB------R-------0--0QAB-----000-R--0000-000---- ...... ...... ...... RATIO : lcs/trimmed_seq_a = 0.618 (= 63/ 102), lcs/trimmed_seq_b = 0.525 (= 63/ 120) SEQ A : name = ./PDBdata/2HG6.pdb c1 SEQ A : residue = MSITSTDICQAADALKGFVGFNRKTGRYIVRFSEDSFGMDVADDSITPTSEFVWSSVRDDVMRLGREQLQILLEQNINERLNIGEPLLVYLRRQDLPEITAQRQLR SEQ A : code = --000QAAAAAAABG0000000QBRRG0000RGQABG0QBG0QABG00QAAABG00R0RRG0000QAAAAAAAABR0QAABR00QAAAAAB000QGR0000000-- SEQ A : lcs = --000----------0000000QBRR-0000R-----0--------00QAAABG-----RG0000QAAAAAA--BR0----R00QAA---B000Q-R0000000-- SEQ B : name = ./zy/d1zyma2.ent c1 SEQ B : residue = SGILASPGIAFGKALLLKEKIIDLSAIQDEVILVAADLTPSETAQLNLKKVLGFITDAGGRTSHTSIMARSLELPAIVGTGSVTSQVKNDDYLILDAVNNQVYVNPTNEVIDKMRAVQEQVASE SEQ B : code = --R0R0000000000000PJ000QAB0R0R0R000R000QAHAABGRQAGGR0000R0R1QB0QAAAAHAABR00001R0R0QAABG00R000000QBR00000R00QAAAAGQB1RQABQA-- SEQ B : lcs = -----------0000000--000Q-B-R-R0-000R000QA-AABGR--G--0000-------QAAAA-AABR0----R0-0QAAB-------000Q-R00000-00----------------- RATIO TABLE : range | frequency RATIO TABLE : --------------|-------------- RATIO RABLE : [0.9, 1.0] | 1433 RATIO TABLE : [0.8, 0.9) | 1766 RATIO TABLE : [0.7, 0.8) | 1902 RATIO TABLE : [0.6, 0.7) | 2460 RATIO TABLE : [0.5, 0.6) | 3233 RATIO TABLE : [0.4, 0.5) | 1298 RATIO TABLE : [0.3, 0.4) | 543 RATIO TABLE : [0.2, 0.3) | 330 RATIO TABLE : [0.1, 0.2) | 39 RATIO TABLE : [0.0, 0.1) | 1 RATIO : lcs/trimmed_seq_a = 1.000 (= 102/ 102), lcs/trimmed_seq_b = 0.232 (= 102/ 439) SEQ A : name = ./PDBdata/2HG6.pdb c1 SEQ A : residue = MSITSTDICQAADALKGFVGFNRKTGRYIVRFSEDSFGMDVADDSITPTSEFVWSSVRDDVMRLGREQLQILLEQNINERLNIGEPLLVYLRRQDLPEITAQRQLR SEQ A : code = --000QAAAAAAABG0000000QBRRG0000RGQABG0QBG0QABG00QAAABG00R0RRG0000QAAAAAAAABR0QAABR00QAAAAAB000QGR0000000-- SEQ A : lcs = --000QAAAAAAABG0000000QBRRG0000RGQABG0QBG0QABG00QAAABG00R0RRG0000QAAAAAAAABR0QAABR00QAAAAAB000QGR0000000-- SEQ B : name = ./pdbstyle-1.71/qb/d1qba_3.ent c1 SEQ B : residue = FPYRGIFLDVARNFHKKDAVLRLLDQMAAYKLNKFHFHLSDDEGWRIEIPGLPELTEVGGQRCHDLSETTCLLPQYGQGPDVYGGFFSRQDYIDIIKYAQARQIEVIPEIDMPAHARAAVVSMEARYKKLHAAGKEQEANEFRLVDPTDTSNTTSVQFFNRQSYLNPCLDSSQRFVDKVIGEIAQMHKEAGQPIKTWHFGGDEAKNIRLGAGYTDKAKPEPGKGIIDQGNEDKPWAKSQVCQTMIKEGKVADMEHLPSYFGQEVSKLVKAHGIDRMQAWQDGLKDAESSKAFATSRVGVNFWDTLYWGGFDSVNDWANKGYEVVVSNPDYVYMDFPYEVNPDERGYYWGTRFSDERKVFSFAPDNMPQNAETSVDRDGNHFNAKSDKPWPGAYGLSAQLWSETQRTDPQMEYMIFPRALSVAERSWHRAGWEQDYRAGREYKG SEQ B : code = --G000000QHB0000QAAAAAAAAAAAABR000000RR00QG0000000QGQABAB1ABG00R0QBRRB000000RR0RG0000000QAAAAAAAAAAAABR000000R00O1RGQAAAAAAAAAAAAAAABRRQAAABRR0RG0QBGR00000QBR00QABG00QBGQAAAAAAAAAAAAAAAAAAABRG00R000R0R0RRG0QABGQBG00QB0000RG000RQABG000RQBGQAAAAAAABRR0R0QABQAAAAAAAAAAAAAABR00G0000QAABQBGR0QABGRGRG000R00001AB0QA1AAAAAAAB00000000QB000QBG0R0R0QBG0000QB0R000QAAAABG0QA0QAAAAA0000QBR0000000RG00R00R00000000RBRR0QAAAAAABGPAAAAAAAAA0000QBB00000R000-- SEQ B : lcs = -------------000Q-----AAAAAAAB------------G0000000Q---B----------------------R-RG0000-----------------------------RGQA--------------B-----------G0QBG----------0QABG00Q---AAA----------------B-G00R0--R-R---G0-------00--0---------Q----------------------------------AAAAAAAABR0------QAAB---R0--------0-----------QA---------------------------------------------AAAAB-0--0------0---Q----------G--R00-00000--------------------------------------------- // [NOTE]: A trimmed sequence is the sequence obtained by removing residues of // irregular 5-tile codes, such as '-', where regular 5-tile codes are // {0, A, R, Q, B, G, 1, O, H, 3, J, 8, P, 9, 2, I}. Irregular 5-tile // codes are ommited during the LCS computation and LCSs consist of // regular 5-tile codes only.