INPUT SEQUENCE (A) : data/2IDB.code INPUT SEQUENCE (B) : data/target_ASTRAL.code SUBSEQUENCE OPTION : Subsequence comparison (|compare window|/|the shorter seq.| = 1.10) EXEC OPTION : [Length only] Hirschberg's algorithm RATIO TABLE : range | frequency RATIO TABLE : --------------|-------------- RATIO RABLE : [0.9, 1.0] | 0 RATIO TABLE : [0.8, 0.9) | 0 RATIO TABLE : [0.7, 0.8) | 11 RATIO TABLE : [0.6, 0.7) | 787 RATIO TABLE : [0.5, 0.6) | 1126 RATIO TABLE : [0.4, 0.5) | 4502 RATIO TABLE : [0.3, 0.4) | 14236 RATIO TABLE : [0.2, 0.3) | 40776 RATIO TABLE : [0.1, 0.2) | 171196 RATIO TABLE : [0.0, 0.1) | 221892 RATIO : lcs/trimmed_seq_a = 0.715 (= 328/ 459), lcs/trimmed_seq_b = 0.651 (= 328/ 504) SEQ A : name = ./PDBdata/2IDB.pdb c1 SEQ A : residue = YNDLRDFLTLLEQQGELKRITLPVDPHLEITEIADRTLRAGGPALLFENPKGYSPVLCNLFGTPKRVAGGQEDVSALREVGKLLAFLKEPEPPKGFRDLPTKRLRGAPCQQKIVSGDDVDLNRIPITCWPEDAAPLITWGLTVTRGPHKERQNLGIYRQQLIGKNKLIRWLSHRGGALDYQEWCAAHPGERFPVSVALGADPATILGAVTPVPDTLSEYAFAGLLRGTKTEVVKCISNDLEVPASAEIVLEGYIEQGETAPEGPYGDHTGYYNEVDSFPVFTVTHITQREDAIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVGVWSFLRQFYTKFVIVCDDDVNARDWNDVIWAITTRDPARDTVLVENTPIDYLDFASPVSGLGSKGLDATNKWPGETQREWGRPIKKDPDVVAHIDAIWDELAIF SEQ A : code = --0QAAAAAAAAABRRG000RG000RBRAAAAAAAAAABGR000000QG00RGO0001RQBRGQAAABQ20RGQAAAAAAAAAAAAAB00000QBBQB800000R00QABR00001R0R0QABGROG00QB0R0000000000000R00RG0000000000R0R0G000RRGRG0QAAAAAAAAAB00RG00000000000QAAAAAAGG000QBG0QAAAAAAABRG00000000R0R0000QB0R000000000R0000R00000QBRG000000000000R000000R00000000001R0QAAAAAAAAAAAAAAAAAAB0QBGR00000QABRR1R000000R0O00RQAABR3QB100QB9R0RG00000QBG0QBGQAAAAAAA8080QA88G0000R0000QBRQBGR00RG000000R00000AB0RG000000000QAAAAAAAABAAABR-- SEQ A : lcs = --0QAAAAAA---BRR-000R-000R-RAAAAAAAAAABG-000000-G00---000--QB-GQAAAB----GQAAAAAAAA-------0000QB-QB------R0-----0000--0R0QABG-------0R0000000000000R00--0000000000-0-0----R-GRG-QAAAAAAAAAB00--00000000000QAAAAAA----------AAAAAAABR-00000000-0-0000QB0-000000000R0000-0000---RG------000000R000000-0000000000-R0QAAAAAAAAAAAAAAAAAAB0--G-0000-------R000000R0-00----------00----0--00000---0QBGQAAAAAA--0-0QA---000-R-----BR--G-00RG000000R00000--0RG000000000QAAAAAAAABAAABR-- SEQ B : name = ./pdbstyle-1.71/i7/d1i7qa_.ent c1 SEQ B : residue = TKPQLTLLKVQASYRGDPTTLFHQLCGARPATLLLESAEINDKQNLQSLLVIDSALRITALGHTVSVQALTANGPALLPLLDEALPPEVRNQARPNGRELTFPAIDAVQDEDARLRSLSVFDALRTILTLVDSPADEREAVMLGGLFAYDLVAGFENLPALRQDQRCPDFCFYLAETLLVLDHQRGSARLQASVFSEQASEAQRLQHRLEQLQAELQQPPQPIPHQKLENMQLSCNQSDEEYGAVVSELQEAIRQGEIFQVVPSRRFSLPCPAPLGPYQTLKDNNPSPYMFFMQDDDFTLFGASPESALKYDAGNRQIEIYPIAGTRPRGRRADGSLDLDLDSRIELEMRTDHKELAEHLMLVDLARNDLARICQAGSRYVADLTKVDRYSFVMHLVSRVVGTLRADLDVLHAYQACMNMGTLSGAPKVRAMQLIAALRSTRRGSYGGRVGYFTAVRNLDTCIVIRSAYVEDGHRTVQAGAGVVQDSIPEREADETRNKARAVLRAIATAHHAKEVF SEQ B : code = -----------0000QBQAAAAAAB00R01R00000000R0RR0000000RR00R0000000RG00000O0QAAAAAAAAAAAGG0QBG000000RG000000000QBG0QAAAABG00QAAAAAAAA1R0000QBGQBR000000R0QAAAABG0R00R000RGR00R000000R000000QABR00000000RGRGQAAAAAAAAAAAAAAAAABG0000000000QB00000RG0QAAAAAAAAAAAAAAABRR0R000000000000QGQAAAAAAAAAB000R0000000R00000000RG000000QBRR0000000000000000QBR00RQAAAAAAAAAAA00QAAAAAIAAAAAAAAAAAAB0G00RGG00R00000000R00000000000000QBG0QAAAAAAB000QAB000R1AAAAAAAAAGBRG0R0RGRG000000QBR000000O1RG0000RRG0000000000QB00QAAAAAAAAAABAAAAAAAAAABR0RG-- SEQ B : lcs = --------------0Q--AAAAAAB--R--R000-----R---------0--00R-------R---------AAAAAAAAAA-----BG000000-G----00000QBG-QAAA-BG--QAAAAAAAA--0000QB-QBR000000R0QA---BG0R00-000---00-000000R000000----00000000RGRGQAAAAAAAAA--------B----0000000--00000--0QAAAAAAAAAAAAA--BR-0-000000000000Q-----------B000-0000000R00000000RG000000--R-0000000000000000--R0--QAAAAAAAAAAA---AAAAA-AA----------B0G00---00R000000--R000000000000--QBG-QAAAAAA-00-QA-000R-----------BRG0-0RG--000000--R00--------0000R-G000000000-Q----AAAAAAAA--BAAA-------BR----- // [NOTE]: A trimmed sequence is the sequence obtained by removing residues of // irregular 5-tile codes, such as '-', where regular 5-tile codes are // {0, A, R, Q, B, G, 1, O, H, 3, J, 8, P, 9, 2, I}. Irregular 5-tile // codes are ommited during the LCS computation and LCSs consist of // regular 5-tile codes only.