INPUT SEQUENCE (A) : data/2IDB.code
INPUT SEQUENCE (B) : data/target_ASTRAL.code
SUBSEQUENCE OPTION : Subsequence comparison (|compare window|/|the shorter seq.| = 1.20)
EXEC OPTION : [Length only] Hirschberg's algorithm
RATIO TABLE : range | frequency
RATIO TABLE : --------------|--------------
RATIO RABLE : [0.9, 1.0] | 0
RATIO TABLE : [0.8, 0.9) | 0
RATIO TABLE : [0.7, 0.8) | 26
RATIO TABLE : [0.6, 0.7) | 534
RATIO TABLE : [0.5, 0.6) | 912
RATIO TABLE : [0.4, 0.5) | 2907
RATIO TABLE : [0.3, 0.4) | 8051
RATIO TABLE : [0.2, 0.3) | 22698
RATIO TABLE : [0.1, 0.2) | 86163
RATIO TABLE : [0.0, 0.1) | 98660
RATIO : lcs/trimmed_seq_a = 0.721 (= 331/ 459), lcs/trimmed_seq_b = 0.602 (= 331/ 550)
SEQ A : name = ./PDBdata/2IDB.pdb c1
SEQ A : residue = YNDLRDFLTLLEQQGELKRITLPVDPHLEITEIADRTLRAGGPALLFENPKGYSPVLCNLFGTPKRVAGGQEDVSALREVGKLLAFLKEPEPPKGFRDLPTKRLRGAPCQQKIVSGDDVDLNRIPITCWPEDAAPLITWGLTVTRGPHKERQNLGIYRQQLIGKNKLIRWLSHRGGALDYQEWCAAHPGERFPVSVALGADPATILGAVTPVPDTLSEYAFAGLLRGTKTEVVKCISNDLEVPASAEIVLEGYIEQGETAPEGPYGDHTGYYNEVDSFPVFTVTHITQREDAIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVGVWSFLRQFYTKFVIVCDDDVNARDWNDVIWAITTRDPARDTVLVENTPIDYLDFASPVSGLGSKGLDATNKWPGETQREWGRPIKKDPDVVAHIDAIWDELAIF
SEQ A : code = --0QAAAAAAAAABRRG000RG000RBRAAAAAAAAAABGR000000QG00RGO0001RQBRGQAAABQ20RGQAAAAAAAAAAAAAB00000QBBQB800000R00QABR00001R0R0QABGROG00QB0R0000000000000R00RG0000000000R0R0G000RRGRG0QAAAAAAAAAB00RG00000000000QAAAAAAGG000QBG0QAAAAAAABRG00000000R0R0000QB0R000000000R0000R00000QBRG000000000000R000000R00000000001R0QAAAAAAAAAAAAAAAAAAB0QBGR00000QABRR1R000000R0O00RQAABR3QB100QB9R0RG00000QBG0QBGQAAAAAAA8080QA88G0000R0000QBRQBGR00RG000000R00000AB0RG000000000QAAAAAAAABAAABR--
SEQ A : lcs = --0QAAAAAAAAAB---00----------AAAAAAAAABG-000000QG00RG-000-RQB-GQAA-B--0R-QAAAAAAAAAAAA-B0000-QB-Q-800000R00QABR0000-R0R0Q--GR--00QB0R0000000000000R00RG000000000-----G000R-GRG0Q---------B--RG00000000000---------000---0-----------00000000-0-0000--0R000000000-0000-0000-----000000000000R00000-R0000000000-R0QAAAAAAAAAAAAAAAAAAB0QB-R00000Q-BRR-R000000-0-00RQAA------00----0--00000---0Q---AAAAAAA----QA---0000R0000QBR--GR--R----000R0000----R-00000000-QAAAAAAAA-AAABR--
SEQ B : name = ./tw/d1twfb_.ent c1
SEQ B : residue = FEDESAPITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLIEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYEKVFIGRLPIMLRSKNCYLSEATESDLYKLKECPFDMGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGREGSSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYMQRTVELAINAKTITSGLKYALATGNWGAGVSQVLNRYTYSSTLSHLRRTNTPIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHIAKLMATEYQDEYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPDVDPAKRIRVSHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVIIGKTTPISSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPGLRFGEMERDCMIAHGAASFLKERLMEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYAAKLLFQELMAMNITPRLYTDRSRDF
SEQ B : code = --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------00RG1R0000000000RRGQR00000RG0QAAAAAAAAAAABPJ00QAAAAABRR00000QAAAABG000R0QAABGPJ00QGG000000RGRB0R000R0QAABG0QHAABG0RQABG0QAAAAAAAAAAABG000R0QBQA8GR0R00000R00000RG00QAAAABRQAB00000R0R0000R0RRQG0RR00000QAAAAB00R00000000000000R00RG0000G00000QGR000RG0RQGG0QBRG000R00000R00R0000000OJ000R000001BG0000R0000000QB00000000000000000R00000RGR00000R0000QABG000QBR000R0000QABH2ABRRQAAAAAAAAAAAAAABRG000R00R0R00QAAAAAAAAABRG0QBR000000QB0R000RG00R0000000001R0QAA00000000PJ0000QAAAAAAAABRRQAAAAAA000RG0R000000QB0RGRR000RQABR00001Q8R0R1R0000000QAAAAAAAAAAABR00R000RG1B0--
SEQ B : lcs = ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------0QAAAAAAAAA--B--00-AAAAA---------AAAABG000-0-------00QG-00----RG----000R-Q--BG-Q-AAB-0RQA----AAAAAAAAAAAB-000-0QBQ-8--0-0000-R00-------QA---BR---0000-R0R0-------QG-R-00---Q----B0-R0000000000000-R00RG0000-00000-G-000RG-R-G-0QBRG000-00000-00-0000000--000-00000---0000R0000000--00000000000000000-00000R--00000R0000----000---000R0---QA---A----AAAAAAAAAAAAAA----------------------AAB--0QBR00000-QB-R---R---R000000000-R-QAA00000000--0---QAAAAAAA----Q-----A000--0R0000--QB-RGRR000----R0000---R0---0000000QAAAAAAAAAAABR-------------
// [NOTE]: A trimmed sequence is the sequence obtained by removing residues of
// irregular 5-tile codes, such as '-', where regular 5-tile codes are
// {0, A, R, Q, B, G, 1, O, H, 3, J, 8, P, 9, 2, I}. Irregular 5-tile
// codes are ommited during the LCS computation and LCSs consist of
// regular 5-tile codes only.