INPUT SEQUENCE (A) : data/2IDB.code
INPUT SEQUENCE (B) : data/target_ASTRAL.code
SUBSEQUENCE OPTION : Whole sequence comparison
EXEC OPTION : [Length only] Naive Dynamic Programing
RATIO TABLE : range | frequency
RATIO TABLE : --------------|--------------
RATIO RABLE : [0.9, 1.0] | 1
RATIO TABLE : [0.8, 0.9) | 9
RATIO TABLE : [0.7, 0.8) | 61
RATIO TABLE : [0.6, 0.7) | 265
RATIO TABLE : [0.5, 0.6) | 932
RATIO TABLE : [0.4, 0.5) | 1799
RATIO TABLE : [0.3, 0.4) | 2460
RATIO TABLE : [0.2, 0.3) | 4126
RATIO TABLE : [0.1, 0.2) | 2651
RATIO TABLE : [0.0, 0.1) | 701
RATIO : lcs/trimmed_seq_a = 0.904 (= 415/ 459), lcs/trimmed_seq_b = 0.293 (= 415/ 1415)
SEQ A : name = ./PDBdata/2IDB.pdb c1
SEQ A : residue = YNDLRDFLTLLEQQGELKRITLPVDPHLEITEIADRTLRAGGPALLFENPKGYSPVLCNLFGTPKRVAGGQEDVSALREVGKLLAFLKEPEPPKGFRDLPTKRLRGAPCQQKIVSGDDVDLNRIPITCWPEDAAPLITWGLTVTRGPHKERQNLGIYRQQLIGKNKLIRWLSHRGGALDYQEWCAAHPGERFPVSVALGADPATILGAVTPVPDTLSEYAFAGLLRGTKTEVVKCISNDLEVPASAEIVLEGYIEQGETAPEGPYGDHTGYYNEVDSFPVFTVTHITQREDAIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVGVWSFLRQFYTKFVIVCDDDVNARDWNDVIWAITTRDPARDTVLVENTPIDYLDFASPVSGLGSKGLDATNKWPGETQREWGRPIKKDPDVVAHIDAIWDELAIF
SEQ A : code = --0QAAAAAAAAABRRG000RG000RBRAAAAAAAAAABGR000000QG00RGO0001RQBRGQAAABQ20RGQAAAAAAAAAAAAAB00000QBBQB800000R00QABR00001R0R0QABGROG00QB0R0000000000000R00RG0000000000R0R0G000RRGRG0QAAAAAAAAAB00RG00000000000QAAAAAAGG000QBG0QAAAAAAABRG00000000R0R0000QB0R000000000R0000R00000QBRG000000000000R000000R00000000001R0QAAAAAAAAAAAAAAAAAAB0QBGR00000QABRR1R000000R0O00RQAABR3QB100QB9R0RG00000QBG0QBGQAAAAAAA8080QA88G0000R0000QBRQBGR00RG000000R00000AB0RG000000000QAAAAAAAABAAABR--
SEQ A : lcs = --0Q----AAAAA-RRG000RG000RBRAAAAAAAAAABGR000000QG00RG-000-RQB-GQAAABQ-0RGQAAAAAAAAAAAAAB00000QBBQB-00000-00QAB-0000--0-0QABG--G00QB-R0000000000000R00RG0000000000R0R0-000R-GRG0QAAAAAAAA-B00--00000000000QAAAAAAGG000QBG0QAAAAAAAB--00000000R0R0000QB0R000000000R0000R00000--RG000000000000R000000R0000000000--0QAAAAAAAAAAAAAAAAAA-0QB-R00000QABRR--000000R0-00RQAABR-QB100QB-R0-G00000QB--QBGQAAAAAAA-0-0QA--G0000R0000QBRQBG-00RG000000R00000AB0RG000000000QAAAAAAAABAAABR--
SEQ B : name = ./tw/d1twfa_.ent c1
SEQ B : residue = VGQQYSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRNLKCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNELMRQALAIKDSKKRFAAIWTLCKTKMVCETDVPSEDDPTQLVSRGGCGNTQPTIRKDGLKLVGSWKKDRATGDADEPELRVLSTEEILNIFKHISVKDFTSLGFNEVFSRPEWMILTCLPVPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHAIEEAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLYWVPDWDGVIPTPAIIKPKPLWSGKQILSVAIPNGIHLQRFDEGTTLLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQKVVNFWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQSLDTIGGSDAAFEKRYRVDLLNTDHTLDPSLLESGSEILGDLKLQVLLDEEYKQLVKDRKFLREVFVDGEANWPLPVNIRRIIQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVLRGKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLSNIEAQFLRSVVHPGEMVGVLAAQSIGEPATQMTLKKVTSGVPRLKEILNVAKNMKTPSLTVYLEPGHAADQEQAKLIRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSLQQSPWLLRLELDRAAMNDKDLTMGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCRVVAEEDHMLKKIENTMLENITLRGVENIERVVMMKYDRKVPSPTGEYVKEPEWVLETDGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRGVSENVILGQMAPIGTGAFDVMIDEESL
SEQ B : code = --RG00RG00000R00000000QAAAAAGG00000GRG01RRRR0RG00RG0R1R0G001RR0RG0RRG000QHBG000000000R00000QAHQAAAAAAAABG0RGRR00R00QBGQAAAAAABGRRQAAAAAAAAAAAABGRG00R0000RG0QBG00000RG00000R00000RG000000000000QG000000000QAAAAAAAABG0QAHAABGR00Q0000QAABG0R000000QAB000R0001RG0000QAAAAAAAAAAAAAAAAAHAAB000QAAAAAAAAAAAAAAAAAB00G0R000000RGQB00000QAAABR01AAAAAAAABRQB00RG00000000QBG0QBG0000QAAAABG0000000QB1QAAAAAAAAB0QGG1BG000000QBR0000QB00QGQBG00000R000R00000R00000001O0RGQABG0000000000000000QAAAAABR001R00000000000QAAAAAAAB0O0QAAHQG0QB0RG0RG0000QAAAAAAAABGQBG000QAAAAAAAABGQB0RR00000RGRGR0R000QAAAAAABG00R00000000R00QBRQBR000000RRG0300000QB0RGR00R0QAAAAAAB00QAAAAAAAAAAAAAAAAAAAAB00000QAABG00QAAAAAAAAAAAAAAAAAAAAAAAAABRRG0000RG0QAAAAAAAAAAAAAAAAAAAAAAAAABG0QBGQAAAAAABR0000QAAAAAB000R00000RRG000RRG0RGR0QBG00R0R0QAA0000RG0QAB000QAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAABQB0000QBR0000QBR00R0R00RQGR00QABG0000RQAGG00QAAAAAG0000QBGQA0000QAB0QBQAABGROQAAAAAAAAAAAAAAAAAAAAAAA0QBR00G00000RQAAAAAAAAAABR00QBG00R00QAAAAAAAAAAAAHR0R000RGQAAAAAAAAABQAAAAAAAAAB0QAAB000RR00QAAAAAAAAAAAAAAAABG001B0RQAAAAAAAAHAAAABG013RG000QAAAAAAABR0QG0R030000000QHBQBGQAAAAAAAAA0G000QAAGGR00000R03GQG00RGQAAAAAAAAABGO300RG0000000QAAAAABR00QAAAAAAAAAGB0QBG000000QBGRG0000000O2RRHQAAAAAAAAAB0RG0R0000RG00000000000000QB00000000000000000QB1AABG0RG0QA0000RBQAAAAB0R0QAAAAAAAAAAAAAAAAABR0000QAAAAAAAAABHQBRG000RORRGRG0R000QBG0R00RGQAAAAAAAAAJR000RRRGQAAAAABRG00RG0QBR0000001G--
SEQ B : lcs = ---------------------0QAAAAA--------R---R-----G-----------------------------------000R------------------G0----00R------------B-R--AAAAAAAAAA--BGR-00-0000---Q-G00---RG000--R-------------------Q-------------------BG-QA-AAB----Q0---------R------------------G----QAAAAAAAAAAAAA--------------------------------------------B00000Q---B-----------B-QB----------00---0---0000QA---B-000000-Q---A-------B--GG-------00QBR0000--00------------00-00000R00--------R----G0000000000-------------R0--R00---------------------------0--0RG-RG0---QAAAAAAAAB----000-------------0--00000-----0-000QAAAAAA-G----------------------------G----000QB--G-0---Q-----------------------AAAAAAAB00000--------------------------------------000R-0----------------------------------------R0000Q-----B0--R00000---000---0R--0---00-0R0---0000RG0---000--------------------------------------0000---0000--R00---------------0000R----00-------0000-----0000---0Q--------------AAAAAAAAAAAAAAAAAA0QBR00-000---QA---------BR-------R00---------------0-000R----------------------------000R---QAA--------------B------RQ-------------B--1----00Q-------BR0-G------00000Q-BQBGQAAAAAAA--0-0--QA-G--0000-R0------------------------------000Q-----BR---------------QBG----00---RG000000---R----------------------------------------------------00000---A-B-0RG0--0000-------------------------------0000QAAAAAAAA-B------------------------------AAA---------------------BR-------------------
// [NOTE]: A trimmed sequence is the sequence obtained by removing residues of
// irregular 5-tile codes, such as '-', where regular 5-tile codes are
// {0, A, R, Q, B, G, 1, O, H, 3, J, 8, P, 9, 2, I}. Irregular 5-tile
// codes are ommited during the LCS computation and LCSs consist of
// regular 5-tile codes only.