INPUT SEQUENCE (A) : ../../data/seq_a.code
INPUT SEQUENCE (B) : ../../data/seq_b.code
SUBSEQUENCE OPTION : Subsequence comparison (|compare window|/|the shorter seq.| = 1.10)
SORT POLICY : Whole structure search of the key protein
EXEC OPTION : [Length only] Hirschberg's algorithm
RATIO TABLE : range | frequency
RATIO TABLE : --------------|--------------
RATIO RABLE : [0.9, 1.0] | 0
RATIO TABLE : [0.8, 0.9) | 0
RATIO TABLE : [0.7, 0.8) | 0
RATIO TABLE : [0.6, 0.7) | 0
RATIO TABLE : [0.5, 0.6) | 0
RATIO TABLE : [0.4, 0.5) | 0
RATIO TABLE : [0.3, 0.4) | 13
RATIO TABLE : [0.2, 0.3) | 40
RATIO TABLE : [0.1, 0.2) | 0
RATIO TABLE : [0.0, 0.1) | 0
RATIO : lcs/trimmed_seq_a = 0.712 (= 37/ 52), lcs/trimmed_seq_b = 0.771 (= 37/ 48)
SEQ A : name = ./PDBdata/2HG6.pdb c1
SEQ A : residue = MSITSTDICQAADALKGFVGFNRKTGRYIVRFSEDSFGMDVADDSITPTSEFVWSSVRDDVMRLGREQLQILLEQNINERLNIGEPLLVYLRRQDLPEITAQRQLR
SEQ A : code = ----------------------------------------------------BG00R0RRG0000QAAAAAAAABR0QAABR00QAAAAAB000QGR0000000--
SEQ A : lcs = ------------------------------------------------------00-0R--0000QAAAAAAAAB-0QAA-----AAAAA-00--G-0000000--
SEQ B : name = ./CATH/alpha_beta/2Layer_Sandwich/Defensin/3.30.30.50/1k8bA00/1k8bA00.pdb c1
SEQ B : residue = EILIEGNRTIIRNFRELAKAVNRDEEFFAKYLLKETGSAGNLEGGRLILQRR
SEQ B : code = --000R0G000RRQAAAAAAAAB0QAAAAAAAAAA00G00000R000000--
SEQ B : lcs = --000R0-000--QAAAAAAAAB0QAAAAAAA---00G00000-00------
RATIO : lcs/trimmed_seq_a = 0.692 (= 36/ 52), lcs/trimmed_seq_b = 0.750 (= 36/ 48)
SEQ A : name = ./PDBdata/2HG6.pdb c1
SEQ A : residue = MSITSTDICQAADALKGFVGFNRKTGRYIVRFSEDSFGMDVADDSITPTSEFVWSSVRDDVMRLGREQLQILLEQNINERLNIGEPLLVYLRRQDLPEITAQRQLR
SEQ A : code = --------------------------------------------------AABG00R0RRG0000QAAAAAAAABR0QAABR00QAAAAAB000QGR00000----
SEQ A : lcs = ------------------------------------------------------00-0R--0000QAAAAAAAAB-0QAA-----AAAAA-00--GR00000----
SEQ B : name = ./CATH/alpha_beta/2Layer_Sandwich/Defensin/3.30.30.50/1k8bA00/1k8bA00.pdb c1
SEQ B : residue = EILIEGNRTIIRNFRELAKAVNRDEEFFAKYLLKETGSAGNLEGGRLILQRR
SEQ B : code = --000R0G000RRQAAAAAAAAB0QAAAAAAAAAA00G00000R000000--
SEQ B : lcs = --000R0-000--QAAAAAAAAB0QAAAAAAA---00G-----R00000---
RATIO : lcs/trimmed_seq_a = 0.680 (= 34/ 50), lcs/trimmed_seq_b = 0.739 (= 34/ 46)
SEQ A : name = ./PDBdata/2HG6.pdb c1
SEQ A : residue = MSITSTDICQAADALKGFVGFNRKTGRYIVRFSEDSFGMDVADDSITPTSEFVWSSVRDDVMRLGREQLQILLEQNINERLNIGEPLLVYLRRQDLPEITAQRQLR
SEQ A : code = ------------------------------------------------------00R0RRG0000QAAAAAAAABR0QAABR00QAAAAAB000QGR0000000--
SEQ A : lcs = ------------------------------------------------------00-0RR-0000QAAAAAAA-BR0Q--B-00-------000-GR00000----
SEQ B : name = ./CATH/alpha_beta/2Layer_Sandwich/Defensin/3.30.30.70/1uglA00/1uglA00.pdb c1
SEQ B : residue = NLMKRCTRGFRKLGKCTTLEEEKCKTLYPRGQCTCSDSKMNTHSCDCKSC
SEQ B : code = --00000RR00000RR0QAAAAAAHAB0R0QBG000000GRG0000R0--
SEQ B : lcs = ----000RR0000----QAAAAAA-AB-R0QB-00000-GR-0000-0--
RATIO : lcs/trimmed_seq_a = 0.607 (= 34/ 56), lcs/trimmed_seq_b = 0.667 (= 34/ 51)
SEQ A : name = ./PDBdata/2HG6.pdb c1
SEQ A : residue = MSITSTDICQAADALKGFVGFNRKTGRYIVRFSEDSFGMDVADDSITPTSEFVWSSVRDDVMRLGREQLQILLEQNINERLNIGEPLLVYLRRQDLPEITAQRQLR
SEQ A : code = --000QAAAAAAABG0000000QBRRG0000RGQABG0QBG0QABG00QAAABG00R0------------------------------------------------
SEQ A : lcs = --000QAAAAAAA-G00000----RRG0000RG----0---0----00QAAA------------------------------------------------------
SEQ B : name = ./CATH/alpha_beta/2Layer_Sandwich/Defensin/3.30.30.30/1ba1002/1ba1002.pdb c1
SEQ B : residue = FDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSM
SEQ B : code = --QAAJ0RG0QB0QAAAAAAAGGRG00000RRG0000000RRG00000QAAAA--
SEQ B : lcs = ------0--0--0QAAAAAAAG---00000RRG0000---R-G0000-QAAA---
RATIO : lcs/trimmed_seq_a = 0.635 (= 33/ 52), lcs/trimmed_seq_b = 0.688 (= 33/ 48)
SEQ A : name = ./PDBdata/2HG6.pdb c1
SEQ A : residue = MSITSTDICQAADALKGFVGFNRKTGRYIVRFSEDSFGMDVADDSITPTSEFVWSSVRDDVMRLGREQLQILLEQNINERLNIGEPLLVYLRRQDLPEITAQRQLR
SEQ A : code = ----------------------------------------------00QAAABG00R0RRG0000QAAAAAAAABR0QAABR00QAAAAAB000QGR0--------
SEQ A : lcs = ----------------------------------------------0-------00R0--G000-QAAAAAAAAB-0QAA-----AAAAA-00--GR0--------
SEQ B : name = ./CATH/alpha_beta/2Layer_Sandwich/Defensin/3.30.30.50/1k8bA00/1k8bA00.pdb c1
SEQ B : residue = EILIEGNRTIIRNFRELAKAVNRDEEFFAKYLLKETGSAGNLEGGRLILQRR
SEQ B : code = --000R0G000RRQAAAAAAAAB0QAAAAAAAAAA00G00000R000000--
SEQ B : lcs = --000R0G000--QAAAAAAAAB0QAAAAAAA---00G-----R0-------
// [NOTE]: A trimmed sequence is the sequence obtained by removing residues of
// irregular 5-tile codes, such as '-', where regular 5-tile codes are
// {0, A, R, Q, B, G, 1, O, H, 3, J, 8, P, 9, 2, I}. Irregular 5-tile
// codes are ommited during the LCS computation and LCSs consist of
// regular 5-tile codes only.