INPUT SEQUENCE (A) : data/seq_a.code
INPUT SEQUENCE (B) : data/seq_b_short.code
SUBSEQUENCE OPTION : Subsequence comparison (|compare window|/|the shorter seq.| = 1.20)
EXEC OPTION : [Length only] Hirschberg's algorithm
RATIO TABLE : range | frequency
RATIO TABLE : --------------|--------------
RATIO RABLE : [0.9, 1.0] | 0
RATIO TABLE : [0.8, 0.9) | 0
RATIO TABLE : [0.7, 0.8) | 0
RATIO TABLE : [0.6, 0.7) | 3
RATIO TABLE : [0.5, 0.6) | 4
RATIO TABLE : [0.4, 0.5) | 0
RATIO TABLE : [0.3, 0.4) | 0
RATIO TABLE : [0.2, 0.3) | 0
RATIO TABLE : [0.1, 0.2) | 0
RATIO TABLE : [0.0, 0.1) | 0
RATIO : lcs/trimmed_seq_a = 0.667 (= 38/ 57), lcs/trimmed_seq_b = 0.792 (= 38/ 48)
SEQ A : name = ./CATH/alpha_beta/2Layer_Sandwich/Defensin/3.30.30.10/1aho000/1aho000.pdb c1
SEQ A : residue = VKDGYIVDDVNCTYFCGRNAYCNEECTKLKGESGYCQWASPYGNACYCYKLPDHVRTKGPGRCH
SEQ A : code = -----000QBR0000000QAAAAAAAAABR0R000000R0QB0000000300QBG0000000--
SEQ A : lcs = -------0---0000000QAAAAAAAAA--0-00----R-----00000-00QBG000000---
SEQ B : name = ./CATH/alpha_beta/2Layer_Sandwich/Defensin/3.30.30.60/1xrsB01/1xrsB01.pdb c1
SEQ B : residue = KVQLSFTLPLKNNERSAEAAKQIALKMGLEEPSVVMQQSLDEEFTFFVVYGN
SEQ B : code = --000000RG0R0QAAAAAAAAAHAAG000R00RR0000R0QBG000000--
SEQ B : lcs = --000000--0-0QAAAAAAAAA----000R00--0000-0QBG000000--
RATIO : lcs/trimmed_seq_a = 0.673 (= 37/ 55), lcs/trimmed_seq_b = 0.804 (= 37/ 46)
SEQ A : name = ./CATH/alpha_beta/2Layer_Sandwich/Defensin/3.30.30.10/1aho000/1aho000.pdb c1
SEQ A : residue = VKDGYIVDDVNCTYFCGRNAYCNEECTKLKGESGYCQWASPYGNACYCYKLPDHVRTKGPGRCH
SEQ A : code = --000000QBR0000000QAAAAAAAAABR0R000000R0QB0000000300QBG00-------
SEQ A : lcs = ---00000--R000000-QAAAAAAA--B--------0R0QB0000000-00---00-------
SEQ B : name = ./CATH/alpha_beta/2Layer_Sandwich/Defensin/3.30.30.70/1uglA00/1uglA00.pdb c1
SEQ B : residue = NLMKRCTRGFRKLGKCTTLEEEKCKTLYPRGQCTCSDSKMNTHSCDCKSC
SEQ B : code = --00000RR00000RR0QAAAAAAHAB0R0QBG000000GRG0000R0--
SEQ B : lcs = --00000R-00000--0QAAAAAA-AB0R0QB-000000---0000-0--
RATIO : lcs/trimmed_seq_a = 0.649 (= 37/ 57), lcs/trimmed_seq_b = 0.771 (= 37/ 48)
SEQ A : name = ./CATH/alpha_beta/2Layer_Sandwich/Defensin/3.30.30.10/1aho000/1aho000.pdb c1
SEQ A : residue = VKDGYIVDDVNCTYFCGRNAYCNEECTKLKGESGYCQWASPYGNACYCYKLPDHVRTKGPGRCH
SEQ A : code = --000000QBR0000000QAAAAAAAAABR0R000000R0QB0000000300QBG0000-----
SEQ A : lcs = --000000--R-----00QAAAAAAAAA--0-00----R-----00000-00QBG0000-----
SEQ B : name = ./CATH/alpha_beta/2Layer_Sandwich/Defensin/3.30.30.60/1xrsB01/1xrsB01.pdb c1
SEQ B : residue = KVQLSFTLPLKNNERSAEAAKQIALKMGLEEPSVVMQQSLDEEFTFFVVYGN
SEQ B : code = --000000RG0R0QAAAAAAAAAHAAG000R00RR0000R0QBG000000--
SEQ B : lcs = --000000R-0-0QAAAAAAAAA----000R00--0000-0QBG0000----
RATIO : lcs/trimmed_seq_a = 0.618 (= 34/ 55), lcs/trimmed_seq_b = 0.739 (= 34/ 46)
SEQ A : name = ./CATH/alpha_beta/2Layer_Sandwich/Defensin/3.30.30.10/1aho000/1aho000.pdb c1
SEQ A : residue = VKDGYIVDDVNCTYFCGRNAYCNEECTKLKGESGYCQWASPYGNACYCYKLPDHVRTKGPGRCH
SEQ A : code = -------0QBR0000000QAAAAAAAAABR0R000000R0QB0000000300QBG0000000--
SEQ A : lcs = -------0---0000000QAAAAAAA--B-0R0-------QB000000------G00000----
SEQ B : name = ./CATH/alpha_beta/2Layer_Sandwich/Defensin/3.30.30.70/1uglA00/1uglA00.pdb c1
SEQ B : residue = NLMKRCTRGFRKLGKCTTLEEEKCKTLYPRGQCTCSDSKMNTHSCDCKSC
SEQ B : code = --00000RR00000RR0QAAAAAAHAB0R0QBG000000GRG0000R0--
SEQ B : lcs = -----00--00000--0QAAAAAA-AB0R0QB-000000G--0000-0--
RATIO : lcs/trimmed_seq_a = 0.579 (= 33/ 57), lcs/trimmed_seq_b = 0.688 (= 33/ 48)
SEQ A : name = ./CATH/alpha_beta/2Layer_Sandwich/Defensin/3.30.30.10/1aho000/1aho000.pdb c1
SEQ A : residue = VKDGYIVDDVNCTYFCGRNAYCNEECTKLKGESGYCQWASPYGNACYCYKLPDHVRTKGPGRCH
SEQ A : code = --000000QBR0000000QAAAAAAAAABR0R000000R0QB0000000300QBG0000-----
SEQ A : lcs = -----000--R0000---QAAAAAAAA-B-0---------Q-0000000-00---0000-----
SEQ B : name = ./CATH/alpha_beta/2Layer_Sandwich/Defensin/3.30.30.50/1k8bA00/1k8bA00.pdb c1
SEQ B : residue = EILIEGNRTIIRNFRELAKAVNRDEEFFAKYLLKETGSAGNLEGGRLILQRR
SEQ B : code = --000R0G000RRQAAAAAAAAB0QAAAAAAAAAA00G00000R000000--
SEQ B : lcs = --000R0-000--QAAAAAAAAB0Q----------00-00000-000000--
// [NOTE]: A trimmed sequence is the sequence obtained by removing residues of
// irregular 5-tile codes, such as '-', where regular 5-tile codes are
// {0, A, R, Q, B, G, 1, O, H, 3, J, 8, P, 9, 2, I}. Irregular 5-tile
// codes are ommited during the LCS computation and LCSs consist of
// regular 5-tile codes only.