• Backbone structures are obtained using ProteinViewer, where N-terminal is colored red and C-terminal blue.
• Superpositions are computed by the DaliLite server.
• Z-Score is a measure of quality of the alignment. As a general rule, above 20 means the two structures are definitely homologous, between 8 and 20 means the two are probably homologous, between 2 and 8 is a grey area, and a Z-Score below 2 is not significan
  
• AR: number of Aligned Residues (=length of the alignment).
• RMSD: superimposed Root Mean Square Deviation, calculated using all structurally equivalent C-alpha atoms.
• SI: Sequence Identity between the two chains
• P-value is used in FATCAT to evaluate the significance of structural similarity detected by FATCAT, the probability of observing a greater score. (Structure pairs with probability < 0.05 are significantly similar)
  
• EP: number of Equivalent Positions. Number of residue pairs that are structurally equivalent (= length of the alignment, similarity).
• Twist: number of rigid-body movements around pivot points (hinges) introduced in the reference protein.
• LCS: longest common subsequence of the two D2 code sequences.
• Click the images to view larger image.
• See the bottom for brief explanation of the D2 codes. 

Query chain: 2nph A (99 residues)
		Residue: PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGMTLNF D2 Code: --001R00R000000RRG00000R0QBGR000000000000000000000R000000000R00000RR0000000000R0R00000QAAAAABR000--

Superposition (or the target chain)		DaliLite result	FATCAT result		D2 code sequences
D2 LCS ratio: 0.99 (=94/95)
d1nh0a_  (whole)
		Z-Score: 20.3 AR: 99 RMSD: 0.7A SI:  98%	P-Value: 0.00 EP: 99 RMSD: 0.68A Twist: 0		Qry: PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGMTLNF D2 : --001R00R000000RRG00000R0QBGR000000000000000000000R000000000R00000RR0000000000R0R00000QAAAAABR000-- LCS: --001R00R000000RRG00000R0QBGR00000000000000000000-R000000000R00000RR0000000000R0R00000QAAAAABR000-- Tgt: PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF D2 : --001R00R000000RRG00000R0QBGR0000000R0000000000000R000000000R00000RR0000000000R0R00000QAAAAABR000-- LCS: --001R00R000000RRG00000R0QBGR0000000-0000000000000R000000000R00000RR0000000000R0R00000QAAAAABR000--
d1sgua_  (whole)
		Z-Score: 20.6 AR: 99 RMSD: 0.5A SI:  88%	P-Value: 0.00 EP: 99 RMSD: 0.51A Twist: 0		Qry: PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGMTLNF D2 : --001R00R000000RRG00000R0QBGR000000000000000000000R000000000R00000RR0000000000R0R00000QAAAAABR000-- LCS: --001R00R000000RRG00000R0QBGR000000000000000000000R000000000R00000RR0000000000-0R00000QAAAAABR000-- Tgt: PQITLWQRPLVTIKIGGQLREALLDTGADDTIFEEISLPGRWKPKMIGGIGGFVKVRQYDQIPIEICGHKVIGTVLVGPTPANVIGRNLMTQIGCTLNF D2 : --001R00R000000RRG00000R0QBGR000000000000000000000R000000000R00000RR000000000000R00000QAAAAABR000-- LCS: --001R00R000000RRG00000R0QBGR000000000000000000000R000000000R00000RR00000000000-R00000QAAAAABR000--
D2 LCS ratio: 0.98 (=93/95)
d1kzka_  (whole)
		Z-Score: 20.5 AR: 99 RMSD: 0.6A SI:  92%	P-Value: 0.00 EP: 99 RMSD: 0.57A Twist: 0		Qry: PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGMTLNF D2 : --001R00R000000RRG00000R0QBGR000000000000000000000R000000000R00000RR0000000000R0R00000QAAAAABR000-- LCS: --001R00R000000RRG00000R0QBGR000000000000000000000-000000000R00000RR000000000-R0R00000QAAAAABR000-- Tgt: PQITLWKRPLVTIRIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYDQIPVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF D2 : --001R00R000000RRG00000R0QBGR00000000000000000000Q0000000000R00000RRG000000000R0R00000QAAAAABR000-- LCS: --001R00R000000RRG00000R0QBGR00000000000000000000-0000000000R00000RR-000000000R0R00000QAAAAABR000--
d1rpia_  (whole)
		Z-Score: 18.9 AR: 99 RMSD: 1.4A SI:  93%	P-Value: 0.00 EP: 99 RMSD: 1.36A Twist: 0		Qry: PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGMTLNF D2 : --001R00R000000RRG00000R0QBGR000000000000000000000R000000000R00000RR0000000000R0R00000QAAAAABR000-- LCS: --001R00R000000RRG00000R0QBGR00000000000000000000-R000000000R00000RR0000000000-0R00000QAAAAABR000-- Tgt: PQITLWQRPIVTIKIGGQLKEALLNTGADDTVLEEVNLPGRWKPKLIGGIGGFVKVRQYDQVPIEICGHKVIGTVLVGPTPANVIGRNLMTQIGCTLNF D2 : --001R00R000000RRG00000R0QBGR0000000R0000000000000R000000000R00000RR000000000000R00000QAAAAABR000-- LCS: --001R00R000000RRG00000R0QBGR0000000-0000000000000R000000000R00000RR00000000000-R00000QAAAAABR000--
D2 LCS ratio: 0.96 (=91/95)
d1c6ya_  (whole)
		Z-Score: 19.2 AR: 99 RMSD: 0.8A SI:  89%	P-Value: 0.00 EP: 99 RMSD: 0.77A Twist: 0		Qry: PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGMTLNF D2 : --001R00R000000RRG00000R0QBGR000000000000000000000R000000000R00000RR0000000000R0R00000QAAAAABR000-- LCS: --001R00R000000RRG00000-0QBGR000000000000000000000-00000000-R00000RR000000000-R0R00000QAAAAABR000-- Tgt: PQITLWQRPVVTIKIGGQLMEALIDTGADDTVLEEMDLPGRWKPKIIGGIGGFVKVRQYDQIPIEICGHKVIGTVLVGPTPTNIIGRNLLTQIGCTLNF D2 : --001R00R000000RRG0000030QBGR00000000000000000000QB000000000R00000RRG000000000R0R00000QAAAAABR000-- LCS: --001R00R000000RRG00000-0QBGR00000000000000000000--000000000R00000RR-000000000R0R00000QAAAAABR000--
d1hvca_  (res105 - res203)
		Z-Score: 20.8 AR: 99 RMSD: 0.5A SI:  98%	P-Value: 0.00 EP: 99 RMSD: 0.49A Twist: 0		Qry: PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGMTLNF D2 : --001R00R000000RRG00000R0QBGR000000000000000000000R000000000R00000RR0000000000R0R00000QAAAAABR000-- LCS: --00-R00R000000--G00000R0QBGR000000000000000000000R000000000R00000RR000000000-R0R00000QAAAAABR000-- Tgt: PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF D2 : --00RR00R00000030G00000R0QBGR000000000000000000000R000000000R00000RRG000000000R0R00000QAAAAABR000-- LCS: --00R-00R000000--G00000R0QBGR000000000000000000000R000000000R00000RR-000000000R0R00000QAAAAABR000--
d2nmza1  (whole)
		Z-Score: 21.0 AR: 99 RMSD: 0.5A SI:  93%	P-Value: 0.00 EP: 99 RMSD: 0.49A Twist: 0		Qry: PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGMTLNF D2 : --001R00R000000RRG00000R0QBGR000000000000000000000R000000000R00000RR0000000000R0R00000QAAAAABR000-- LCS: --001R00R000000RRG00000R0QBGR0000000000000000000--R000000000R00000RR0000000000-0R00000QAAAA-BR000-- Tgt: PQITLWKRPLVTIKIGGQLKEALLDTGADDTVIEEMSLPGRWKPKMIGGIGGFIKVRQYDQIIIEIAGHKAIGTVLVGPTPANIIGRNLLTQIGATLNF D2 : --001R00R000000RRG00000R0QBGRG00000030000000000000R000000000R00000RRG00000000000R00000QBAAAABR000-- LCS: --001R00R000000RRG00000R0QBGR-000000-0000000000000R000000000R00000RR-00000000000R00000Q-AAAABR000--
D2 LCS ratio: 0.91 (=86/95)
d1idaa_  (whole)
		Z-Score: 18.6 AR: 99 RMSD: 1.0A SI:  49%	P-Value: 0.00 EP: 99 RMSD: 0.99A Twist: 0		Qry: PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGMTLNF D2 : --001R00R000000RRG00000R0QBGR000000000000000000000R000000000R00000RR0000000000R0R00000QAAAAABR000-- LCS: --00-R00R000000RR-00000-0QBGR----00000000000000000-000000000R00000RR0000000000-0R00000QAAAAABR000-- Tgt: PQFSLWKRPVVTAYIEGQPVEVLLDTGADDSIVAGIELGNNYSPKIVGGIGGFINTKEYKNVEIEVLNKKVRATIMTGDTPINIFGRNILTALGMSLNL D2 : --00RR00R000000RR00000030QBGR00000000R01RG0000000Q0000000000R00000RRG00000000000R00000QAAAAABR000-- LCS: --00R-00R000000RR000000--QBGR00000000-0---0000000-0000000000R00000RR-00000000000R00000QAAAAABR000--
D2 LCS ratio: 0.89 (=85/95)
d1bdqa_  (whole)
		Z-Score: 20.1 AR: 99 RMSD: 0.6A SI:  89%	P-Value: 0.00 EP: 99 RMSD: 0.63A Twist: 0		Qry: PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGMTLNF D2 : --001R00R000000RRG00000R0QBGR000000000000000000000R000000000R00000RR0000000000R0R00000QAAAAABR000-- LCS: --00-R0-R000000RRG00000R0QBGR0000000000000000-----R000000000R00000RR00000000--R0R0000-QAAAAABR000-- Tgt: PQITLWQRPLVTIKIGGQLKEALLDTGADDSIVAGIELPGRWKPKMVGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPINIIGRNLLTQIGCTLNF D2 : --00QRG0R000000RRG00000R0QBGRG0000R0R0000000030001R000000000R00000RRG000000030R0R000R0QAAAAABR000-- LCS: --00-R-0R000000RRG00000R0QBGR-0000-0-00000000-000-R000000000R00000RR-0000000-0R0R000-0QAAAAABR000--
D2 LCS ratio: 0.88 (=84/95)
d1fmba_  (res5 - res103)
		Z-Score: 14.3 AR: 93 RMSD: 1.8A SI:  34%	P-Value: 0.00 EP: 93 RMSD: 1.60A Twist: 0		Qry: PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGMTLNF D2 : --001R00R000000RRG00000R0QBGR000000000000000000000R000000000R00000RR0000000000R0R00000QAAAAABR000-- LCS: ---0--00-000000RRG00000-0QBGR000000000000000000000-000000000-00---RR0000000000R0R00000QAAAAABR00--- Tgt: LEKRPTTIVLINDTPLNVLLDTGADTSVLTTAHYNRLKYRGRKYQGTGIGGVGGNVETFSTPVTIKKKGRHIKTRMLVADIPVTILGRDILQDLGAKLV D2 : --000000000RRG0000030QBGR00000QAAAAB0R0000000030000OB00000000000000RR0000000000R0R00000QAAAAABR00-- LCS: --000000000RRG00000-0QBGR00000------0-00000000-0000--00000000000000RR0000000000R0R00000QAAAAABR00--
D2 LCS ratio: 0.86 (=82/95)
d1tcwa_  (whole)
		Z-Score: 18.1 AR: 99 RMSD: 1.2A SI:  52%	P-Value: 0.00 EP: 99 RMSD: 1.20A Twist: 0		Qry: PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGMTLNF D2 : --001R00R000000RRG00000R0QBGR000000000000000000000R000000000R00000RR0000000000R0R00000QAAAAABR000-- LCS: ---0-R0-R000000RRG00000R0QBGR000000000000000000000-00-------R00000R-0000000000-0R00000QAAAAABR000-- Tgt: PQFSLWRRPVVTAHIEGQPVEVLLDTGADDSIVTGIELGPHYTPKIVGGIGGFINTKEYKNVKIEVLGKRIKGTIMTGDTPINIFGRNLLTALGMSLNL D2 : --0RRRG0R000000RRG00000R0QBGR00001RG0O0RG00000000QB000000000R000000RG00000000000R00000QAAAAABR000-- LCS: --0R---0R000000RRG00000R0QBGR0000---0-0--00000000--000000000R00000-R-00000000000R00000QAAAAABR000--
D2 LCS ratio: 0.85 (=81/95)
d1cb8a3  (res119 - res217)
		Z-Score: 0.8 AR: 40 RMSD: 5.1A SI:  5%	P-Value: 0.44 EP: 48 RMSD: 3.72A Twist: 1		Qry: PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGMTLNF D2 : --001R00R000000RRG00000R0QBGR000000000000000000000R000000000R00000RR0000000000R0R00000QAAAAABR000-- LCS: --00--00-000000R--00000R0--GR000000000000000000000R000000000R00000RR0000000000-0R00000QAA---B-0---- Tgt: DSLQAKKAWFFFDKEIVCLGAGINSNAPENITTTLNQSWLNGPVISTAGKTGRGKITTFKAQGQFWLLHDAIGYYFPEGANLSLSTQSQKGNWFHINNS D2 : --G0000000000R0000000R000RGRG00000R00000000000R000000R000000000R00000RRG0000R000R0000R000000QAAB0-- LCS: ---0000000000R00000--R0---GR-00000-00000000000-00000-R000000000R00000RR-0000-000-0000R00000-QAAB0--
d2co3a1  (res1 - res99)
		No Significant Similarities	P-Value: 0.44 EP: 34 RMSD: 1.93A Twist: 1		Qry: PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGMTLNF D2 : --001R00R000000RRG00000R0QBGR000000000000000000000R000000000R00000RR0000000000R0R00000QAAAAABR000-- LCS: --00--00-000000R--00000-0----000000000000000000000R000000000-00000RR0000000000-0-00000QAAAA-BR000-- Tgt: QKSVDIVFSSPQDLTVSLIPVSGLKAGKNAPSAKIAKLVVNSTTLKEFGVRGISNNVVDSTGTAWRVAGKNTGKEIGVGLSSDSLRRSDSTEKWNGVNW D2 : --0000000000R000000000R00000000R0000000000R00000000000QG000QBRR000000Q00R00000000QAAAABGR00000RRG-- LCS: --0000000000R000000000-00000000-0000000000R00000000000--000--RR000000-00-00000000QAAAAB-R000-------
d1pxza_  (res119 - res217)
		No Significant Similarities	P-Value: 0.74 EP: 35 RMSD: 3.96A Twist: 1		Qry: PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGMTLNF D2 : --001R00R000000RRG00000R0QBGR000000000000000000000R000000000R00000RR0000000000R0R00000QAAAAABR000-- LCS: --00--00R000000---000--R0QB--000000000000000000000R00000000-R00000RR0000000000-0-00000QAAAA-B-000-- Tgt: HSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTV D2 : --0000R000000000RR0QAB000000000R0R0000R0000000R000000R00R00000R01R0000R0000RG000000000QAGQAAAB000-- LCS: --0000R000000000R-0Q-B000000000-0-0000-0000000R000000-00R00000R--R0000-0000--00000000-QA--AAAB000--
d1qhda2  (res67 - rse165)
		No Significant Similarities	P-Value: 0.55 EP: 37 RMSD: 2.55A Twist: 1		Qry: PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGMTLNF D2 : --001R00R000000RRG00000R0QBGR000000000000000000000R000000000R00000RR0000000000R0R00000QAAAAABR000-- LCS: --00-R00-000000R-G00000-0QB-R000000000000000000000R000000000-00000R-0000000000-0R00---QAAAA-B-00--- Tgt: RRVLTTATITLLPDAERFSFPRVITSADGATTWYFNPVILRPNNVEIEFLLNGQIINTYQARFGTIIARNFDTIRLSFQLMRPPNMTPAVAALFPNAQP D2 : --000R000000000QABRG000000QBRR0000000000000R0000000RRG0R0000R0000000000R00000000000RG00QAAAABG0R0-- LCS: ---00R00000000----RG000000QBR-0000000000000-0000000---0R0000-0000000000R00000000000R-00QAAAAB-0-0--
D2 LCS ratio: 0.84 (=80/95)
d2arca_  (res10 - res109)
		No Significant Similarities	P-Value: 0.50 EP: 47 RMSD: 3.35A Twist: 1		Qry: PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGMTLNF D2 : --001R00R000000RRG00000R0QBGR000000000000000000000R000000000R00000RR0000000000R0R00000QAAAAABR000-- LCS: ---0--00-000000RRG00000R0----000000000000000000000R0000000--R00000--0000000000-0-0000-QAAAAABR000-- Tgt: NAHLVAGLTPIEANGYLDFFIDRPLGMKGYILNLTIRGQGVVKNQGREFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVYFRPRAYWHEWLNWPSIF D2 : --G000000R000RGQBRG0O00QB00R0000000000000000RRG000000R0000000R00000000QBGR000000000000QAAAAABR000-- LCS: ---000000-000R---RG0-00--00R0000000000000000---000000R0000000R00000000----000000000000QAAAAABR000--
d1bhea_  (res167 - res265)
		No Significant Similarities	P-Value: 0.85 EP: 32 RMSD: 1.57A Twist: 1		Qry: PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGMTLNF D2 : --001R00R000000RRG00000R0QBGR000000000000000000000R000000000R00000RR0000000000R0R00000QAAAAABR000-- LCS: --00-R0-R000000R-G00000R0QBGR000000000000000000000R0000000--R00000--0000000000R0R000--------BR000-- Tgt: VSLINSPNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIKAYKGRAETRNISILHNDFGTGHGMSIGSETMGVYNV D2 : --00R0R00R0000RG000000R000000QBG0R0000000RG000000R00000000R0000000RG000000000R000000R0R000PB0R000-- LCS: --00R0R00-0000RG00000-R-----0QBG-R0000000--000000-00000000R0000000R-000000000-000000R0R000-B-R000--
d1ewfa2  (res83 - res181)
		Z-Score: 0.8 AR: 31 RMSD: 3.7A SI:  3%	P-Value: 0.10 EP: 27 RMSD: 1.57A Twist: 0		Qry: PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGMTLNF D2 : --001R00R000000RRG00000R0QBGR000000000000000000000R000000000R00000RR0000000000R0R00000QAAAAABR000-- LCS: --00-R00R000000R-G00000-0QB--000000000000000000000-000000000-00000RR0000000000-0-00000Q-----B-000-- Tgt: TFLPEVAKKFPNMKIQIHVSASTPPHLSVQPTGLTFYPAVDVQAFAVLPNSALASLFLIGMHTTGSMEVSAESNRLVGELKLDRLLLELKHSNIGPFPV D2 : --00RHAAB00R000000000RG0000000QB0000000000000000QBR000030000000000000000RRG00000000000000000QB000-- LCS: --00R----00R000000---RG000000-QB0000000000000000---0000-000000000000000-RR-0000000000000000-QB000--
d2f4pa1  (res34 - res132)
		No Significant Similarities	P-Value: 0.43 EP: 33 RMSD: 3.13A Twist: 0		Qry: PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGMTLNF D2 : --001R00R000000RRG00000R0QBGR000000000000000000000R000000000R00000RR0000000000R0R00000QAAAAABR000-- LCS: --00--00-000000---00000-0QB--000000000000000000000-000000000R00000R-0000000000-0R00000QAAAAAB-0---- Tgt: TQVYDVVFEPGARTHWHSHPGGQILIVTRGKGFYQERGKPARILKKGDVVEIPPNVVHWHGAAPDEELVHIGISTQVHLGPAEWLGSVTEEEYRKATEG D2 : --00000000R00000000QB0000000000000000RG0000000R0000000R00000000R00000000000RQAB00000000R0QAAAAAB0-- LCS: --00000000-00000000QB0000000000000000--0000000-0000000R00000---R00000000000R---00000-----QAAAAAB0--
d1fmms_  (res29 - res127)
		No Significant Similarities	P-Value: 0.61 EP: 58 RMSD: 2.74A Twist: 2		Qry: PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGMTLNF D2 : --001R00R000000RRG00000R0QBGR000000000000000000000R000000000R00000RR0000000000R0R00000QAAAAABR000-- LCS: ---01R00-000000R-G00000-0QB-R000000000000000000000-000000000-00000RR000000000-R-R00000QA----B-00--- Tgt: RSDPYIQLQFYAESVGEVYIKSLETGQYLAMDSDGQLYASQSPSEECLFLERLEENNYNTYKSKVHADKDWFVGIKKNGKTKPGSRTHFGQKAILFLPL D2 : --0R1R000000000RG000000QBR000000Q00000000000QABG000000000000000000RRRRG00001001000RR00000B0QABG00-- LCS: --0-1R00000000-RG000000QBR000000-00000000000----000000000000000000RR---0000-00-000RR00000--QAB-00--
d1h80a_  (res135 - res233)
		No Significant Similarities	P-Value: 0.61 EP: 43 RMSD: 3.01A Twist: 1		Qry: PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGMTLNF D2 : --001R00R000000RRG00000R0QBGR000000000000000000000R000000000R00000RR0000000000R0R00000QAAAAABR000-- LCS: --00-R00R000000---00---R0---R000000000000000000000R000000000-00000R-0000000000-0R00000QAAAA-BR00--- Tgt: FKLGDVRNYKISNFTIDDNKTIFASILVDVTERNGRLHWSRNGIIERIKQNNALFGYGLIQTYGADNILFRNLHSEGGIALRMETDNLLMKNYKQGGIR D2 : --00R00R00000000R0RR0000R00R00000RRG0000000000R0000R00QB0000000000R0000R0000000R00R0O00QAAAABRG00-- LCS: --00R00R00000000R0R-0000-00-00000---0000000000R0000-00--00000000--R0000-0000000R00-0-00QAAAABR-00--
d1i6vc_  (res106 - res204)
		Z-Score: 0.2 AR: 4 RMSD: 11.2A SI:  5%	P-Value: 0.32 EP: 51 RMSD: 2.23A Twist: 2		Qry: PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGMTLNF D2 : --001R00R000000RRG00000R0QBGR000000000000000000000R000000000R00000RR0000000000R0R00000QAAAAABR000-- LCS: --00-R00-000000---00000R0--G-000000000000000000000-00000000-R00000--0000000000-0-00000QAAAAAB-000-- Tgt: LIKEDEVFLGHLPLMTEDGSFIINGADRVIVSQIHRSPGVYFTPDPARPGRYIASIIPLPKRGPWIDLEVEASGVVTMKVNKRKFPLVLLLRVLGYDQE D2 : --000RR000000000QB0G000R0G0000000000000000000QG0000000000R0QBG00000000000000000000G000QAAAAAAB000-- LCS: ---00R-000000000--0-000R0G0000000000000000000--0000000000R0---00000000000000000000----QAAAAA-B000--
d1izna_  (res126 - res224)
		Z-Score: 0.1 AR: 46 RMSD: 7.5A SI:  7%	P-Value: 0.19 EP: 35 RMSD: 3.11A Twist: 0		Qry: PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGMTLNF D2 : --001R00R000000RRG00000R0QBGR000000000000000000000R000000000R00000RR0000000000R0R00000QAAAAABR000-- LCS: --00-R00-000000RRG00000-0QB-R000000000000000000000-000000000R00000--0000000000-0-0000-QAAAAA------- Tgt: VKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIK D2 : --B00RR0000000000RRG0000000000000QABRG00000000000000O0000000000000000R00000000000000000000QHAAAAA-- LCS: ---00R-00000000--RRG-------000000Q-BR-00000000000000-0000000000000000R00000000000000000000Q-AAAAA--
d1j2za_  (res76 - res174)
		No Significant Similarities	P-Value: 0.88 EP: 31 RMSD: 3.65A Twist: 1		Qry: PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGMTLNF D2 : --001R00R000000RRG00000R0QBGR000000000000000000000R000000000R00000RR0000000000R0R00000QAAAAABR000-- LCS: --00--00-000000R--00000-0QBGR00000000000000000000-R000000000R00000R-0000000000R0R00000-------R000-- Tgt: YSELIIGEDNLIREFCMINPGTEGGIKKTLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQFVRIAKGCMIAGKSALGK D2 : --000000R00000R0000000QBGRRG00000R00000R00000R00000R00000R00000R00000R00000R00000R00000R00000R000-- LCS: ---00000-00000R000000-QBGR--00000-00000-00000-00000R00000-0000-R00000R00000-00000R0----R00000R000--
d2jf2a1  (res112 - res210)
		No Significant Similarities	P-Value: 0.82 EP: 39 RMSD: 3.61A Twist: 1		Qry: PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGMTLNF D2 : --001R00R000000RRG00000R0QBGR000000000000000000000R000000000R00000RR0000000000R0R00000QAAAAABR000-- LCS: --00--00-000000R--00000R0----0000000000000000000--R000000000R00000R-000000000-R0-00000QAAAAAB-000-- Tgt: GSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQFCIIGAHVMVGGCSGVAQDVPPYVIAQGNHATPFGVNIEGLKRRGFSRE D2 : --R00000R00000R00000R00000R00000R00000R00000R00000R00000R00000R000000000R000003O000000RQAAAAAB000-- LCS: ---00000-00000R00000R00000-00000-00000-00000R00000-0000-R00000R000000000R00000--0------QAAAAAB000--
d1juha_  (res45 - res143)
		No Significant Similarities	P-Value: 0.70 EP: 42 RMSD: 4.32A Twist: 1		Qry: PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGMTLNF D2 : --001R00R000000RRG00000R0QBGR000000000000000000000R000000000R00000RR0000000000R0R00000QAAAAABR000-- LCS: --00--00-000000R-G0000-------000000000000000000000R000000000R00000R-0000000000-0-00000QAAAAAB-000-- Tgt: AFTLMGTNAPHSDALGVLPHIHQKHYENFYCNKGSFQLWAQSGNETQQTRVLSSGDYGSVPRNVTHTFQIQDPDTEMTGVIVPGGFEDLFYYLGTNATD D2 : --0000000000RG0R000000R0G000000R00000000000RG000000000R0000000R000000000QB00000000O1PQAAAAAABG000-- LCS: --0000000000RG0-000000-0-000000-00000000000R-000000000R00000--R000000000--0000000----QAAAAA-B-000--
d1k24a_  (res83 - res181)
		Z-Score: 0.6 AR: 39 RMSD: 3.9A SI:  8%	P-Value: 0.38 EP: 49 RMSD: 4.30A Twist: 1		Qry: PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGMTLNF D2 : --001R00R000000RRG00000R0QBGR000000000000000000000R000000000R00000RR0000000000R0R00000QAAAAABR000-- LCS: --00--00-000000R-G00000-0----000000000000000000000-000000000-00000RR0000000000-0R00000QAA---BR000-- Tgt: ENRIDLYTGYTYTQTLSDSLNFRVGAGLGFESSKDSIKTTKHTLHSSRQSWLAKVHADLLSQLGNGWYINPWSEVKFDLNSRYKLNTGVTNLKKDINQK D2 : --0000000000000R0QGG0000000000000000000R0000000000000000000000R1RR000000000000R000000RQAAB1RRG000-- LCS: -----0000000000R--G-0000000000000000000-0000000000000000000000R-R-00000000000-R00000--QAAB-R--000--
d1k4za_  (res2 - res100)
		No Significant Similarities	P-Value: 0.61 EP: 45 RMSD: 2.43A Twist: 2		Qry: PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGMTLNF D2 : --001R00R000000RRG00000R0QBGR000000000000000000000R000000000R00000RR0000000000R0R00000QAAAAABR000-- LCS: --00--00R000000RRG0000-R0QBG-000000000000000000000R000000000-00000--0000000000-0R00000-------R000-- Tgt: PPRKELVGNKWFIENYENETESLVIDANKDESIFIGKCSQVLVQIKGKVNAISLSETESCSVVLDSSISGMDVIKSNKFGIQVNHSLPQISIDKSDGGN D2 : --000000RG0000R00R0RG0000R00QBG00000R00R000000000R00000R00R00000000QB00000R00R00000R000R00000R000-- LCS: ----0000R-0000-00R-RG0000R0-QBG00000-00-000000000-00000R00-00000000--00000-00-00000-000R00000R000--
d2nlra_  (res53 - res151)
		No Significant Similarities	P-Value: 0.43 EP: 43 RMSD: 2.89A Twist: 1		Qry: PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGMTLNF D2 : --001R00R000000RRG00000R0QBGR000000000000000000000R000000000R00000RR0000000000R0R00000QAAAAABR000-- LCS: --00--00-000000RRG0000-R0QBGR000000000000000000000-000000000R00000R-0000000000-0-00000-------R000-- Tgt: APKSYPSVFNGCHYTNCSPGTDLPVRLDTVSAAPSSISYGFVDGAVYNASYDIWLDPTARTDGVNQTEIMIWFNRVGPIQPIGSPVGTASVGGRTWEVW D2 : --R0000000000RRG000R0R1O00QABGR0000000000000000000000000RGR030000R000000R0000R0000000000000RRG000-- LCS: ---0000000000RRG000-0R--0-Q-BGR0000000000000000000000000---0-0000R00000-R0000-000000000000-R--000--
d1o88a_  (res200 - res298)
		No Significant Similarities	P-Value: 0.78 EP: 37 RMSD: 3.38A Twist: 1		Qry: PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGMTLNF D2 : --001R00R000000RRG00000R0QBGR000000000000000000000R000000000R00000RR0000000000R0R00000QAAAAABR000-- LCS: --00--00-000000---00000R0---R000000000000000000000-0000000--R00000RR0000000000R0R00---QAAAAABR000-- Tgt: DTGRNITYHHNYYNDVNARLPLQRGGLVHAYNNLYTNITGSGLNVRQNGQALIENNWFEKAINPVTSRYDGKNFGTWVLKGNNITKPADFSTYSITWTA D2 : --0000000R0000R0000R0R000000000R0000R000000000RR000000R0000R00RR0001QBRHR0000000R0RG00QAAAAABR000-- LCS: --0000000-0000-0000R0R000000000-0000-000000000--000000R0000-0-RR000------0000000R0R-00QAAAAABR000--
d2pora_  (res123 - res221)
		Z-Score: 0.1 AR: 46 RMSD: 7.3A SI:  7%	P-Value: 0.59 EP: 47 RMSD: 3.12A Twist: 1		Qry: PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGMTLNF D2 : --001R00R000000RRG00000R0QBGR000000000000000000000R000000000R00000RR0000000000R0R00000QAAAAABR000-- LCS: --00-R00-00000-R-G00000-0----000000000000000000000-000000000-00000--0000000000-0-00000QAAAAABR000-- Tgt: YSAGAFSVAASMSDGKVGETSEDDAQEMAVAAAYTFGNYTVGLGYEKIDSPDTALMADMEQLELAAIAKFGATNVKAYYADGELDRDFARAVFDLTPVA D2 : --00RG0000000ORG00RGR0000000000000000RG00000000000R0QBG00000000000000R0RG000000000000QAAAAAABR000-- LCS: --00R-0000000-RG00---0000000000000000--00000000000-0---00000000000000-0--000000000000QAAAAA-BR000--
d1usra_  (res50 - res148)
		Z-Score: 0.1 AR: 42 RMSD: 6.6A SI:  7%	P-Value: 0.38 EP: 50 RMSD: 2.73A Twist: 2		Qry: PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGMTLNF D2 : --001R00R000000RRG00000R0QBGR000000000000000000000R000000000R00000RR0000000000R0R00000QAAAAABR000-- LCS: --00--00R000000---00000-0QBGR00000000000000000000-R0000000--R000--R-0000000000-0-00000QAAAA-BR000-- Tgt: TRIPSFDMSATHYCYTHNVILSGCRDHSHSHQYLALGVLRTTATGRIFFSTLRSISLDDTQNRKSCSVSATPLGCDMLCSKVTETEEEDYNSAVPTLMA D2 : --0000000R00000000000B0QBGRR00000000000000QBR000000R0000000RG000R000000QB000000000R00QAAAABGRG000-- LCS: -----0000R00000000000-0QBGR-00000000000000---000000R0000000R-000R000000--000000000-0-QAAAAB-R-000--
d1v3wa_  (res55 - res153)
		No Significant Similarities	P-Value: 0.93 EP: 28 RMSD: 3.42A Twist: 1		Qry: PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGMTLNF D2 : --001R00R000000RRG00000R0QBGR000000000000000000000R000000000R00000RR0000000000R0R00000QAAAAABR000-- LCS: --00--00R000000R-G00000-0---R000000000000000000000R000000000R00000R-0000000000-0-00000QAAAAA------- Tgt: YSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHGAKVGNYVIIGISSVILDGAKIGDHVIIGAGAVVPPNKEIPDYSLVLGVPGKVVRQLTEEEIEWTK D2 : --0000R0000000RG000000R00000R0000R00000R00000R00000R00000R00000R00000R00000R000003O00RR0000QAAAAA-- LCS: --0000R000000-RG000000R00000-0000-00000-00000-00---R00000-0000-R00000R00000-00000--00--0000QAAAAA--
d1v6ca_  (res200 - res298)
		No Significant Similarities	P-Value: 0.75 EP: 45 RMSD: 4.02A Twist: 2		Qry: PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGMTLNF D2 : --001R00R000000RRG00000R0QBGR000000000000000000000R000000000R00000RR0000000000R0R00000QAAAAABR000-- LCS: --00-R00-00000-RRG00000R0QB--000000000000000000000-000000000-00000R-0000000000-0-00000QAAAAA------- Tgt: GPGEAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLVERVGNQGSSYPEINSTKAC D2 : --00R0000000RRG0000000RRG0RQAB00000R000000R0000000000000000000000RG00R00R0RG00000000000R00RQAAAAA-- LCS: --00R0000000RRG00000--R--0-Q-B00000-000000-0000000000000000000000--00R00-0--00000000000-00-QAAAAA--
D2 LCS ratio: 0.83 (=79/95)
d1baia_  (res25 - res123)
		Z-Score: 11.2 AR: 83 RMSD: 1.8A SI:  41%	P-Value: 0.00 EP: 84 RMSD: 1.85A Twist: 0		Qry: PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGMTLNF D2 : --001R00R000000RRG00000R0QBGR000000000000000000000R000000000R00000RR0000000000R0R00000QAAAAABR000-- LCS: ---0-R00-000000--G00000--QBG----000000000000000000R000000000-00000--00000000--R0R00000QAAAAABR000-- Tgt: VKQRSVYITALLDTGADDTVISEEDWPTDWPVMEAANPQIHGIGGGIPVRKSRDMIELGVINRDGSLERPLLLFPLVAMTPVNILGRDCLQGLGLRLTN D2 : --0R0000000O0QBGR00000QABG0QHO0000ORGR00000B00000000RG00000000QB00000000000000R0R00000QAAAAABR000-- LCS: --0R0000000-0--G-00000Q-BG0---0000----00000-00000000R-00000000--00000000000000R0R00000QAAAAABR000--

[The D² code]

• 0 = DDDDD    (Extended strand, small blue spheres)
• 1 = DDDDU
• 2 = DDDUD
• 3 = DDDUU
• 8 = DUDDD
• 9 = DUDDU
• A = DUDUD    (Helix, large red spheres)
• B = DUDUU    (C-cap, large orange spheres)
• G = UDDDD    (Large green spheres)
• H = UDDDU
• I = UDDUD
• J = UDDUU
• O = UUDDD
• P = UUDDU
• Q = UUDUD    (N-cap, large orange spheres)
• R = UUDUU    (Turn, large yellow spheres)