[Pairs of HIV-1 PR monomers: P61 crystals (1/3)]





DaliLite result D2 code/DSSP state sequences
2
P
3
A
jpg image
  Z-Score: 23.1

RMSD: 0.1A
 
D2cdA --001R00R000000RRG00000R0QBGR0000000000000000000003000000000R00000RRG000000000R0R00000QAAAAABR000--
                                                        +                 *
D2cdB --001R00R000000RRG00000R0QBGR000000000000000000000R000000000R00000RR0000000000R0R00000QAAAAABR000--
DSSPA .EE.SSS..EEEEEETTEEEEEEE.TT.SS.EE.S....S..EEEEEE.SB.EEEEEEEEEEEEEETTEEEEEEEEESS.SS.EE.HHHHGGGT.EEE.
     
DSSPB .EE.SSS..EEEEEETTEEEEEEE.TT.SS.EE.S....S..EEEEEE.SB.EEEEEEEEEEEEEETTEEEEEEEEESS.SS.EE.HHHHGGGT.EEE.
2
P
3
C
jpg image
  Z-Score: 23.0

RMSD: 0.1A
 
D2cdA --001R00R000000RRG00000R0QBGRG0000R0O0000000000000R000000000R00000RRG000000000R0RG0000QAAAAABR000--
     
D2cdB --001R00R000000RRG00000R0QBGRG0000R0O0000000000000R000000000R00000RRG000000000R0RG0000QAAAAABR000--
DSSPA .EE.SSS..EEEEEETTEEEEEEE.TT.SS.EESS....S..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEES..SS.EE.HHHHHHTT.EEE.
     
DSSPB .EE.SSS..EEEEEETTEEEEEEE.TT.SS.EESS....S..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEES..SS.EE.HHHHHHTT.EEE.
2
P
3
D
jpg image
  Z-Score: 23.0

RMSD: 0.1A
 
D2cdA --00RR00R000000RRG00000R0QBGR00000R000000000000000R000000000R00000RRG000000000R0R0O000QAAAAABR000--
     
D2cdB --00RR00R000000RRG00000R0QBGR00000R000000000000000R000000000R00000RRG000000000R0R00000QAAAAABR000--
DSSPA .EEESSS..EEEEESSS.EEEEEE.TT.SS.EE.S...SS..EEEEEE.SB.EEEEEEEEEEEEEETTEEEEEEEEESS.SSEEE.HHHHTTTT.EEE.
         +          ++++               +                                           +
DSSPB .EE.SSS..EEEEEETTEEEEEEE.TT.SS.EEES...SS..EEEEEE.SB.EEEEEEEEEEEEEETTEEEEEEEEEES.SSEEE.HHHHTTTT.EEE.
1
U
8
G
jpg image
  Z-Score: 22.7

RMSD: 0.1A
 
D2cdA --001R00R000000RRG00000R0QBGR000000000000000000000R000000000R00000RRG000000000R0R00000QB1AAABR000--
     
D2cdB --001R00R000000RRG00000R0QBGR000000000000000000000R000000000R00000RRG000000000R0R00000QB1AAABR000--
DSSPA .EE.SSS..EEEEEETTEEEEEEE.TTBSSEEE.S....S..EEEEEEETBEEEEEEEEEEEEEEETTEEEEEEEEES..SS.EE.HHHHTTTT.EEE.
                                 +                    ++ +                          +
DSSPB .EE.SSS..EEEEEETTEEEEEEE.TT.SSEEE.S....S..EEEEEE.SB.EEEEEEEEEEEEEETTEEEEEEEEESS.SS.EE.HHHHTTTT.EEE.
1
F
Q
X
jpg image
  Z-Score: 22.7

RMSD: 0.1A
 
D2cdA --001R00R000000RRG00000R0QBGRG0000000000000000000R0000000000R00000RRG000000000R0R00000QB1AAABR000--
                                                       -
D2cdB --001RG0R000000RRG00000R0QBGRG0000000000000000000Q0000000000R00000RRG000000000R0R00000QB1AAABR000--
DSSPA .EE.SSS..EE.EEETTEE..EEE.SS.SSEEE.S....S..EEEEEEETBEEEEEEEEEEEEEEETTEEEEEEEEES..SS.EE.HHHHTTTT.EEE.
                                 +
DSSPB .EE.SSS..EE.EEETTEE..EEE.SSBSSEEE.S....S..EEEEEEETBEEEEEEEEEEEEEEETTEEEEEEEEES..SS.EE.HHHHTTTT.EEE.
1
R
L
8
jpg image
  Z-Score: 22.7

RMSD: 0.1A
 
D2cdA --001RG0R000000RRG00000R0QBGR000000000000000000000R000000000R00000R0G000000000R0R00000QB1AAABR000--
            *                                          ++                                    ++
D2cdB --001R00R000000RRG00000R0QBGR00000000000000000000QB000000000R00000R0G000000000R0R00000QAAAAABR000--
DSSPA .EEESSS..EEEEEETTEEEEEEE.TT.SS.EEES....S..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEE..SS.EE.HHHHHHTT.EEE.
                                                                                    +
DSSPB .EEESSS..EEEEEETTEEEEEEE.TT.SS.EEES....S..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEES.SS.EE.HHHHHHTT.EEE.
2
P
Y
N
jpg image
  Z-Score: 22.6

RMSD: 0.1A
 
D2cdA --001R00R000000RRG00000R0QBGR000000000000000000000R000000000R00000RRG00000000030R00000QAAAAABR000--
     
D2cdB --001R00R000000RRG00000R0QBGR000000000000000000000R000000000R00000RRG00000000030R00000QAAAAABR000--
DSSPA .EE.SSS..EEEEEETTEEEEEEE.TT.SS.EE.S....S..EEEEEEETBEEEEEEEEEEEEEEETTEEEEEEEEESS.SS.EE.HHHHGGGT.EEE.
     
DSSPB .EE.SSS..EEEEEETTEEEEEEE.TT.SS.EE.S....S..EEEEEEETBEEEEEEEEEEEEEEETTEEEEEEEEESS.SS.EE.HHHHGGGT.EEE.
2
Q
6
3
jpg image
  Z-Score: 22.6

RMSD: 0.1A
 
D2cdA --001R00R000000RRG00000R0QBGRG00000000000000000000R000000000R00000RRG000000000R0R00000QAAAAABR000--
     
D2cdB --001R00R000000RRG00000R0QBGRG00000000000000000000R000000000R00000RRG000000000R0R00000QAAAAABR000--
DSSPA .EE.SSS..EEEEEETTEEEEEEE.TT.SS.EE.S...SS..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEES..SS.EE.HHHHGGGT.EEE.
     
DSSPB .EE.SSS..EEEEEETTEEEEEEE.TT.SS.EE.S...SS..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEES..SS.EE.HHHHGGGT.EEE.
1
M
0
B
jpg image
  Z-Score: 22.6

RMSD: 0.1A
 
D2cdA --001RG0R000000RRG00000R0QBGRG0000000000000000000QB000000000R00000RRG000000000R0R00000QAAAAABR000--
                                                       ++
D2cdB --001RG0R000000RRG00000R0QBGRG00000000000000000000R000000000R00000RRG000000000R0R00000QAAAAABR000--
DSSPA .EE.SSS..EEEEEETTEEEEEEE.TTBSS.EE.S....S..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEESS.SS.EE.HHHHTTTT.EEE.
                                 +                                                              +++
DSSPB .EE.SSS..EEEEEETTEEEEEEE.TT.SS.EE.S....S..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEESS.SS.EE.HHHHGGGT.EEE.
2
Z
5
4
jpg image
  Z-Score: 22.5

RMSD: 0.1A
 
D2cdA --001R00R000000RRG00000R0QBGR000000000000000000000R000000000R00000RR0000000000R0R00000QAAAAABR000--
                                                       ++
D2cdB --001R00R000000RRG00000R0QBGR00000000000000000000QB000000000R00000RR0000000000R0R00000QAAAAABR000--
DSSPA .EEESSS..EEEEEETTEEEEEEE.TT.SS.EE.S....S..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEES..SS.EE.HHHHTTTT.EEE.
                                    +
DSSPB .EEESSS..EEEEEETTEEEEEEE.TT.SSEEE.S....S..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEES..SS.EE.HHHHTTTT.EEE.
2
P
Y
M
jpg image
  Z-Score: 22.5

RMSD: 0.1A
 
D2cdA --001R00R000000RRG00000R0QBGRG00000000000000000000R000000000R00000RR0000000000R0R00000QAAAAABR000--
                                   +                                      *
D2cdB --001R00R000000RRG00000R0QBGR000000000000000000000R000000000R00000RRG000000000R0R00000QAAAAABR000--
DSSPA .EE.SSS..EEEEEETTEEEEEEE.TT.SSEEESS...SS.EEEEEEE.SB.EEEEEEEEEEEEEETTEEEEEEEEESS.SS.EE.HHHHGGGT.EEE.
                                               +
DSSPB .EE.SSS..EEEEEETTEEEEEEE.TT.SSEEESS...SS..EEEEEE.SB.EEEEEEEEEEEEEETTEEEEEEEEESS.SS.EE.HHHHGGGT.EEE.
2
F
L
E
jpg image
  Z-Score: 22.5

RMSD: 0.1A
 
D2cdA --001R00R000000RRG00000R0QBGRG0000000000000000000Q0000000000R00000RRG000000000R0R00000QBAAAABR000--
                                                       ++
D2cdB --001R00R000000RRG00000R0QBGRG00000000000000000000R000000000R00000RRG000000000R0R00000QBAAAABR000--
DSSPA .EE.SSS..EEEEEETTEEEEEEE.TT.SS.EE.S....S..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEESS.SS.EE.HHHHGGGT.EEE.
     
DSSPB .EE.SSS..EEEEEETTEEEEEEE.TT.SS.EE.S....S..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEESS.SS.EE.HHHHGGGT.EEE.
1
I
Z
I
jpg image
  Z-Score: 22.5

RMSD: 0.1A
 
D2cdA --00PR00R000000RRG00000R0QBGRG00000000000000000000R000000000R00000RR0000000000O0R00000QBAAAABR000--
          -                                            ++                           *
D2cdB --001R00R000000RRG00000R0QBGRG0000000000000000000Q0000000000R00000RR0000000000R0R00000QBAAAABR000--
DSSPA .EE.SSS..EEEEEETTEEEEEEE.TT.SS.EE.S...SS..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEES..SS.EE.HHHHGGGT.EEE.
                                                                                                +++
DSSPB .EE.SSS..EEEEEETTEEEEEEE.TT.SS.EE.S...SS..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEES..SS.EE.HHHHHHTT.EEE.
2
R
K
F
jpg image
  Z-Score: 22.4

RMSD: 0.1A
 
D2cdA --001RG03000000RRG00000R0QBGR00000000000000000000QB000000000R00000RR0000000000R0R00000QAAAAABR000--
                                                       ++                 +
D2cdB --001R003000000RRG00000R0QBGR000000000000000000000R000000000R00000RRG000000000R0R00000QAAAAABR000--
DSSPA .EE.SSS..EEEEEETTEEEEEEE.TT.SS.EE.S....S..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEES..SS.EE.HHHHGGGT.EEE.
         +                                                                          +
DSSPB .EEESSS..EEEEEETTEEEEEEE.TT.SS.EE.S....S..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEESS.SS.EE.HHHHGGGT.EEE.
1
L
Z
Q
jpg image
  Z-Score: 22.4

RMSD: 0.1A
 
D2cdA --001R00R000000RRG00000R0QBGRG000000R000000000000Q0000000000R00000RR0000000000R0R00000QAAAAABR000--
                                          +            +                  *
D2cdB --001R00R000000RRG00000R0QBGRG000000000000000000000000000000R00000RR0000000000R0R00000QAAAAABR000--
DSSPA .EEESSS..EEEEEETTEEEEEEE.TT.SS.EESS....S..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEESS.SS.EE.HHHHGGGT.EEE.
                                       +
DSSPB .EEESSS..EEEEEETTEEEEEEE.TT.SS.EE.S....S..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEESS.SS.EE.HHHHGGGT.EEE.
2
Q
A
K
jpg image
  Z-Score: 22.4

RMSD: 0.1A
 
D2cdA --001R00R000000RRG00000R0QBGR000000000000000000000R000000000R00000RR0000000000R0R00000QAAAAABR000--
                                   *                   ++                 +         +
D2cdB --001R00R000000RRG00000R0QBGRG0000000000000000000QB000000000R00000RRG00000000000R00000QAAAAABR000--
DSSPA .EE.SSS..EEEEEETTEEEEEEE.TT.SSEEE.S...SS..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEESS.SS.EE.HHHHGGGT.EEE.
                                    +                 ++++                          +
DSSPB .EE.SSS..EEEEEETTEEEEEEE.TT.SS.EE.S...SS..EEEEEE.SS.EEEEEEEEEEEEEETTEEEEEEEEES..SS.EE.HHHHGGGT.EEE.
1
Z
S
R
jpg image
  Z-Score: 22.3

RMSD: 0.1A
 
D2cdA --001R00R000000RRG00000R0QBGRG00000000000000000000B000000000R00000RRG000000000R0R00000QAAAAABR000--
     
D2cdB --001R00R000000RRG00000R0QBGRG00000000000000000000B000000000R00000RRG000000000R0R00000QAAAAABR000--
DSSPA .EE.SSS..EEEEEETTEEEEEEE.TTBSS.EE.S....S..EEEEEEETBEEEEEEEEEEEEEEETTEEEEEEEEESS.SS.EE.HHHHGGGT.EEE.
         +                       +                                                              +++
DSSPB .EEESSS..EEEEEETTEEEEEEE.TT.SS.EE.S....S..EEEEEEETBEEEEEEEEEEEEEEETTEEEEEEEEESS.SS.EE.HHHHTTTT.EEE.
2
A
Q
U
jpg image
  Z-Score: 22.2

RMSD: 0.2A
 
D2cdA --001R00R000000RRG00000R0QBGRG00000000000000000000B000000000R00000RRG000000000R0R00000QAAAAABR000--
                                                       +
D2cdB --001R00R000000RRG00000R0QBGRG0000000000000000000QB000000000R00000RRG000000000R0R00000QAAAAABR000--
DSSPA .EEESSS..EEEEEETTEEEEEEE.TT.SS.EE.S....S..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEESS.SS.EE.HHHHGGGT.EEE.
         +
DSSPB .EE.SSS..EEEEEETTEEEEEEE.TT.SS.EE.S....S..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEESS.SS.EE.HHHHGGGT.EEE.
2
Q
6
4
jpg image
  Z-Score: 22.2

RMSD: 0.2A
 
D2cdA --001R00R000000RRG00000R0QBGRG0000000000000000000RG000000000R00000RRG000000000R0R00000QAAAAABR000--
                                                       ++
D2cdB --001R00R000000RRG00000R0QBGRG00000000000000000000R000000000R00000RRG000000000R0R00000QAAAAABR000--
DSSPA .EE.SSS..EEEEEETTEEEEEEE.TT.SSEEE.S....S..EEEEEE.SS.EEEEEEEEEEEEEETTEEEEEEEEESS.SS.EE.HHHHGGGT.EEE.
                                                      ++++
DSSPB .EE.SSS..EEEEEETTEEEEEEE.TT.SSEEE.S....S..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEESS.SS.EE.HHHHGGGT.EEE.
1
Z
L
F
jpg image
  Z-Score: 22.2

RMSD: 0.2A
 
D2cdA --001R00R000000RRG0000030QBGRG00000000000000000001B000000000R00000RR0000000000R0R00000QAAAAABR000--
                             *                         ++
D2cdB --001R00R000000RRG0000000QBGRG00000000000000000000R000000000R00000RR0000000000R0R00000QAAAAABR000--
DSSPA .EEESSS..EEEEEETTEEEEEEE.TTBSS.EESS....S.EEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEESS.SS.EE.HHHHTTTT.EEE.
         +                       +             +      ++++
DSSPB .EE.SSS..EEEEEETTEEEEEEE.TT.SS.EESS....S..EEEEEE.SS.EEEEEEEEEEEEEETTEEEEEEEEESS.SS.EE.HHHHTTTT.EEE.
1
P
R
O
jpg image
  Z-Score: 22.2

RMSD: 0.2A
 
D2cdA --001R00R000000RRG00000R0QBGR00000000000000000000QB000000000R00000RRG000000000R0R00000QAAAAABR000--
                                   -                   ++
D2cdB --001R00R000000RRG00000R0QBGRG00000000000000000000R000000000R00000RRG000000000R0R00000QAAAAABR000--
DSSPA .EE.SSS..EEEEEETTEEEEEEE.TT.SS.EE.S....S..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEESS.SS.EE.HHHHTTTT.EEE.
     
DSSPB .EE.SSS..EEEEEETTEEEEEEE.TT.SS.EE.S....S..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEESS.SS.EE.HHHHTTTT.EEE.
1
S
G
U
jpg image
  Z-Score: 22.2

RMSD: 0.2A
 
D2cdA --001R00R000000RRG00000R0QBGR000000000000000000000R000000000R00000RR000000000000R00000QAAAAABR000--
                                                       ++                                    ++
D2cdB --001R00R000000RRG00000R0QBGR00000000000000000000Q3000000000R00000RR000000000000R00000QB1AAABR000--
DSSPA .EE.SSS..EEEEEETTEEEEEEE.TT.SS.EESS....S..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEES..SS.EE.HHHHTTTT.EEE.
                                                                                                +++
DSSPB .EE.SSS..EEEEEETTEEEEEEE.TT.SS.EESS....S..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEES..SS.EE.HHHHGGGT.EEE.





[The D2 code]

[The DSSP code]