[Pairs of HIV-1 PR monomers: P61 crystals (2/3)]





DaliLite result D2 code/DSSP state sequences
1
A
A
Q
jpg image
  Z-Score: 22.1

RMSD: 0.1A
 
D2cdA --001R00R000000RRG0000030QBGRG00000000000000000000R000000000R00000RRG00000000000R00030QAAAAAB0000--
                             -                                                                     +
D2cdB --001R00R000000RRG00000R0QBGRG00000000000000000000R000000000R00000RRG00000000000R00030QAAAAABO000--
DSSPA .EEETTS..EEEEEETTEEEEEEE.TT.SSEEE.S....S..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEES..SS.EE.HHHHTTTT.EEE.
                    ++++            +  +                         ++++        +++   +
DSSPB .EEETTS..EEEEE.SS.EEEEEE.TT.SS.EEES....S..EEEEEEETTEEEEEEEE.S..EEETTEEE...EEEE..SS.EE.HHHHTTTT.EEE.
1
Z
P
K
jpg image
  Z-Score: 22.1

RMSD: 0.2A
 
D2cdA --001R00R000000RRG00000R0QBGR00000000000000000000Q0000000000R00000RRG000000000R0R00000QAAAAABR000--
                                                       ++                 +
D2cdB --001R00R000000RRG00000R0QBGR000000000000000000000R000000000R00000RR0000000000R0R00000QAAAAABR000--
DSSPA .EE.SSS..EEEEEETTEEEEEEE.TTBSS.EE.S....S..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEES..SS.EE.HHHHTTTT.EEE.
                                 +             +                                    +
DSSPB .EE.SSS..EEEEEETTEEEEEEE.TT.SS.EE.S....S.EEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEESS.SS.EE.HHHHTTTT.EEE.
1
B
W
B
jpg image
  Z-Score: 22.1

RMSD: 0.2A
 
D2cdA --001R00R000000RRG00000R0QBGR0000000000000000000020000000000R00000ORG00000000000R00000QAAAAABR000--
          +                                            ++               +           +
D2cdB --00RR00R000000RRG00000R0QBGR000000000000000000000R000000000R00000RRG000000000R0R00000QAAAAABR000--
DSSPA .EE.SSS..EEEEEETTEEEEEEE.TT.SS.EE.S....S..EEEEEEETBEEEEEEEEEEEEEEETTEEEEEEEEES..SS.EE.HHHHTTTT.EEE.
         +
DSSPB .EEESSS..EEEEEETTEEEEEEE.TT.SS.EE.S....S..EEEEEEETBEEEEEEEEEEEEEEETTEEEEEEEEES..SS.EE.HHHHTTTT.EEE.
2
B
7
Z
jpg image
  Z-Score: 22.0

RMSD: 0.2A
 
D2cdA --001R00R000000RRG00000R0QBGR0000R0000000000000000R000000000R00000RRG000000000R0R00000QB1AAABR000--
                                                                                              +
D2cdB --001R00R000000RRG00000R0QBGR0000R0000000000000000R000000000R00000RRG000000000R0R00000QBAAAABR000--
DSSPA .EEESSS..EEEEEETTEEEEEEE.TT.SSEEESS....S..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEESS.SS.EE.HHHHHHHT.EEE.
                                    +                                               +           +++
DSSPB .EEESSS..EEEEEETTEEEEEEE.TT.SS.EESS....S..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEES..SS.EE.HHHHTTTT.EEE.
2
Q
H
C
jpg image
  Z-Score: 22.0

RMSD: 0.2A
 
D2cdA --001R00R000000RRG00000R0QBGR000000000000000000000R000000000R00000RRG000000000R0R00000QAAAAABR000--
            +                                          ++
D2cdB --001RG0R000000RRG00000R0QBGR00000000000000000000QB000000000R00000RRG000000000R0R00000QAAAAABR000--
DSSPA .EEESSS..EEEEEETTEEEEEEE.TT.SSEEE.S....S..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEESS.SS.EE.HHHHGGGT.EEE.
         +                                            ++++                                      +++
DSSPB .EE.SSS..EEEEEETTEEEEEEE.TT.SSEEE.S....S..EEEEEE.SS.EEEEEEEEEEEEEETTEEEEEEEEESS.SS.EE.HHHHTTTT.EEE.
2
B
6
0
jpg image
  Z-Score: 22.0

RMSD: 0.2A
 
D2cdA --001R00R000000RRG00000R0QBGR00000000000000000000QB000000000R00000RR0000000000R0RG0000QB1AAABR000--
                                   +                   ++                              +     ++
D2cdB --001R00R000000RRG00000R0QBGRG00000000000000000000R000000000R00000RR0000000000R0R00000QAAAAABR000--
DSSPA .EE.SSS..EEEEEETTEEEEEEE.TT.SS.EESS....S..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEES..SS.EE.HHHHTTTT.EEE.
                                                                                    +
DSSPB .EE.SSS..EEEEEETTEEEEEEE.TT.SS.EESS....S..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEESS.SS.EE.HHHHTTTT.EEE.
2
N
P
H
jpg image
  Z-Score: 22.0

RMSD: 0.3A
 
D2cdA --001R00R000000RRG00000R0QBGR000000000000000000000R000000000R00000RRG000000000R0R00000QAAAAABR000--
                                                       ++
D2cdB --001R00R000000RRG00000R0QBGR00000000000000000000QB000000000R00000RRG000000000R0R00000QAAAAABR000--
DSSPA ..EESSS..EEEEEETTEEEEEEE.TTBSS.EE.S....S..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEESS.SS.EE.HHHHGGGT.EEE.
       +
DSSPB .EEESSS..EEEEEETTEEEEEEE.TTBSS.EE.S....S..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEESS.SS.EE.HHHHGGGT.EEE.
1
M
E
S
jpg image
  Z-Score: 21.8

RMSD: 0.2A
 
D2cdA --001R00R000000RRG00000R0QBGR000000000000000000002B000000000R00000RRG000000000R0R00000QAAAAABR000--
                             +                         +                                     +
D2cdB --001R00R000000RRG0000000QBGR000000000000000000000B000000000R00000RRG000000000R0R00000QBAAAABR000--
DSSPA .EEESSS..EEEEEETTEEEEEEE.TT.SSEEE.S....S..EEEEEEETBEEEEEEEEEEEEEEETTEEEEEEEEES..SS.EE.HHHHTTTT.EEE.
                                                                                    +
DSSPB .EEESSS..EEEEEETTEEEEEEE.TT.SSEEE.S....S..EEEEEEETBEEEEEEEEEEEEEEETTEEEEEEEEESS.SS.EE.HHHHTTTT.EEE.
1
H
X
B
jpg image
  Z-Score: 21.8

RMSD: 0.2A
 
D2cdA --001R00R000000RRG00000R0QBGR000000000000000000000B000000000R00000RRG000000000R0R00000QB9AAABR000--
                                   +                    +                           +     +  +
D2cdB --001R00R000000RRG00000R0QBGRG00000000000000000000R000000000R00000RRG00000000000R00030QA9AAABR000--
DSSPA .EE.SSS..EEEEEETTEEEEEEE.TT.SS.EEES....S..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEES.SS.EE.HHHHTTTT.EEE.
         +                                                                          +
DSSPB .EEESSS..EEEEEETTEEEEEEE.TT.SS.EEES....S..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEE..SS.EE.HHHHTTTT.EEE.
1
A
X
A
jpg image
  Z-Score: 21.8

RMSD: 0.2A
 
D2cdA --00PR00R000000RRG0000000QBGRG00000000000000000000R000000000R00000RRG00000000000R00000QAAAAABR000--
                                          +            ++                           +       +
D2cdB --00PR00R000000RRG0000000QBGRG000000300000000000020000000000R00000RRG000000000R0R00000PAAAAABR000--
DSSPA .EEESSS..EEEEEETTEEEEEEE.TT.SS.EE.S....S..EEEEEE.SS.EEEEEEEEEEEEEETTEEEEEEEEES..SS.EE.HHHHTTTT.EEE.
         +                                            ++++
DSSPB .EE.SSS..EEEEEETTEEEEEEE.TT.SS.EE.S....S..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEES..SS.EE.HHHHTTTT.EEE.
3
D
3
T
jpg image
  Z-Score: 21.8

RMSD: 0.3A
 
D2cdA --001RG0R000000RRG00000R0QBGR00001RG00000000000000R000000000R00000RRG000000000R0R00000QAAAAABR000--
          + +                                          ++
D2cdB --00RR00R000000RRG00000R0QBGR00001RG0000000000000QB000000000R00000RRG000000000R0R00000QAAAAABR000--
DSSPA .EE.SSS..EEEEEETTEEEEEEE.TTBSSEEESS....S..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEES..SS.EE.HHHHTTTT.EEE.
                                                                                                +++
DSSPB .EE.SSS..EEEEEETTEEEEEEE.TTBSSEEESS....S..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEES..SS.EE.HHHHGGGT.EEE.
1
H
P
V
jpg image
  Z-Score: 21.7

RMSD: 0.2A
 
D2cdA --001R00R000000RRG0000000QBGR00000000000000000000QB000000000R000000RG000000000R0R00000QAAAAABR000--
          +                  +                         ++               +
D2cdB --00PR00R000000RRG00000R0QBGR000000000000000000000R000000000R00000RRG000000000R0R00000QAAAAABR000--
DSSPA .EEESSS..EEEEEETTEEEEEEE.TT.SSEEE.S....S..EEEEEE.SS.EEEEEEEEEEEEEETTEEEEEEEEESS.SS.EE.HHHHTTTT.EEE.
          ++                        +                 ++++
DSSPB .EEETTS..EEEEEETTEEEEEEE.TT.SS.EE.S....S..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEESS.SS.EE.HHHHTTTT.EEE.
1
Q
B
T
jpg image
  Z-Score: 21.7

RMSD: 0.3A
 
D2cdA --00QR000000000RRG00000R0QBGR000000000000000000000R000000000R00000RRG000000000R0R00000QAAAAABR000--
          +   +              +                                          +
D2cdB --001R00R000000RRG0000000QBGR000000000000000000000R000000000R00000ORG000000000R0R00000QAAAAABR000--
DSSPA .EE.SSS..EEEEEETTEEEEEEE.TT.SS.EE.S....S..EEEEEE.SB.EEEEEEEEEEEEEETTEEEEEEEEES..SS.EE.HHHHTTTT.EEE.
                                                      ++ +              +++         +
DSSPB .EE.SSS..EEEEEETTEEEEEEE.TT.SS.EE.S....S..EEEEEEETBEEEEEEEEEEEEEEESS.EEEEEEEESS.SS.EE.HHHHTTTT.EEE.
1
M
E
T
jpg image
  Z-Score: 21.7

RMSD: 0.3A
 
D2cdA --001RG00000000RRG0000000QBGR0000000000000000000030000000000R00000RRG00000000000R00000QAAAAABR000--
            +                                          +                +           +
D2cdB --001R000000000RRG0000000QBGR000000000000000000000R000000000R00000ORG000000000R0R00000QAAAAABR000--
DSSPA .EE.SSS..EEEEEETTEEEEEEE.TT.SSEEE.S....S..EEEEEE.SB.EEEEEEEEEEEEEETTEEEEEEEEES..SS.EE.HHHHTTTT.EEE.
                                                      ++ +
DSSPB .EE.SSS..EEEEEETTEEEEEEE.TT.SSEEE.S....S..EEEEEEETBEEEEEEEEEEEEEEETTEEEEEEEEES..SS.EE.HHHHTTTT.EEE.
1
H
V
R
jpg image
  Z-Score: 21.7

RMSD: 0.3A
 
D2cdA --001RG0R000000RRG00000O0QBGR00000000000000000000R0000000000R000000RG000000000R0R00000QAAAAABR000--
            +                +                         ++               +           +
D2cdB --001R00R000000RRG0000030QBGR000000000000000000000R000000000R00000RRG00000000000R00000QAAAAABR000--
DSSPA .EEETTS..EEEEEETTEEEEEEE.TT.SSEEEES...SS..EEEEEE.SS.EEEEEEEEEEEEEETTEEEEEEEEEE..SS.EE.HHHHTTTT.EEE.
         +++                        +  +    +         ++++                         +
DSSPB .EE.SSS..EEEEEETTEEEEEEE.TT.SS.EE.S....S..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEES..SS.EE.HHHHTTTT.EEE.
1
B
W
A
jpg image
  Z-Score: 21.7

RMSD: 0.3A
 
D2cdA --001R00R000000RRG00000R0QBGR000000000000000000000B000000000R00000RR0000000000R0R00000QAAAAABR000--
          +   +              +                          +               + +         +
D2cdB --00RR000000000RRG0000000QBGR000000000000000000000R000000000R00000ORG00000000000R00000QAAAAABR000--
DSSPA .EEETTS..EEEEEETTEEEEEEE.TT.SS.EE.S....S..EEEEEEETBEEEEEEEEEEEEEEETTEEEEEEEEESS.SS.EE.HHHHTTTT.EEE.
                                                                                    +
DSSPB .EEETTS..EEEEEETTEEEEEEE.TT.SS.EE.S....S..EEEEEEETBEEEEEEEEEEEEEEETTEEEEEEEEES..SS.EE.HHHHTTTT.EEE.
1
A
8
G
jpg image
  Z-Score: 21.6

RMSD: 0.2A
 
D2cdA --001R00R000000RRG0000000QBGRG00000000000000000000R0000000003000R0RRG000000000R0R00000QBAAAABR000--
                             +                          +         +   +
D2cdB --001R00R000000RRG00000R0QBGRG00000000000000000000B000000000R00000RRG000000000R0R00000QBAAAABR000--
DSSPA .EEETTS..EEEEEETTEEEEEEE.TT.SS.EE.S....S.EEEEEEE.SS.EEEEEEEEEEEEEETTEEEEEEEEES..SS.EE.HHHHTTTT.EEE.
          ++                                   +      ++++
DSSPB .EEESSS..EEEEEETTEEEEEEE.TT.SS.EE.S....S..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEES..SS.EE.HHHHTTTT.EEE.
1
Z
S
F
jpg image
  Z-Score: 21.6

RMSD: 0.2A
 
D2cdA --001R00R000000RRG00000R0QBGRG0000000000000000000QB000000000R00000RRG000000000R0R00000QAAAAABR000--
                             +            +            ++
D2cdB --001R00R000000RRG0000000QBGRG000000R0000000000000R000000000R00000RRG000000000R0R00000QAAAAABR000--
DSSPA .EE.SSS..EEEEEETTEEEEEEE.TTBSS.EE.S....S..EEEEEEESS.EEEEEEEEEEEEEETTEEEEEEEEESS.SS.EE.HHHHTTTT.EEE.
                                 +                     +++
DSSPB .EE.SSS..EEEEEETTEEEEEEE.TT.SS.EE.S....S..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEESS.SS.EE.HHHHTTTT.EEE.
1
M
E
R
jpg image
  Z-Score: 21.6

RMSD: 0.2A
 
D2cdA --001R00R000000RRG0000000QBGR00000000000000000000OB000000000R00000RRG000000000R0R00000QAAAAABR000--
              +              -                         ++                           +
D2cdB --001R003000000RRG0000030QBGR000000000000000000000R000000000R00000RRG00000000030R00000QAAAAABR000--
DSSPA .EEETTS..EEEEEETTEEEEEEE.TT.SS.EE.S....S..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEESS.SS.EE.HHHHTTTT.EEE.
          ++                                          ++++                          +
DSSPB .EEESSS..EEEEEETTEEEEEEE.TT.SS.EE.S....S..EEEEEE.SS.EEEEEEEEEEEEEETTEEEEEEEEES..SS.EE.HHHHTTTT.EEE.
1
H
O
S
jpg image
  Z-Score: 21.6

RMSD: 0.3A
 
D2cdA --00RR00R000000RRG0000030QBGRG000000R0000000000000R000000000R00000RRG000000000R0R00000QBAAAABR000--
          +                  -     +      +                           +             +     +  +
D2cdB --001R00R000000RRG00000R0QBGR000000000000000000000R000000000R000O0RRG00000000000R000R0QAAAAABR000--
DSSPA .EEETTS..EEEEEETTEEEEEEE.TT.SS.EE......S..EEEEEE.SB.EEEEEEEEEEEEEETTEEEEEEEEESS.SS.EE.HHHHTTTT.EEE.
          ++                           ++                                 +        +
DSSPB .EEESSS..EEEEEETTEEEEEEE.TT.SS.EEES....S..EEEEEE.SB.EEEEEEEEEEEEEETT.EEEEEEEEES.SS.EE.HHHHTTTT.EEE.
1
O
D
X
jpg image
  Z-Score: 21.5

RMSD: 0.2A
 
D2cdA --001R00R000000RRG00000R0QBGR00000003000000000000Q0000000000R00000RR000000000000R00000QA2AAABR000--
          + +                             +            ++                 +         +         +
D2cdB --003RG0R000000RRG00000R0QBGR000000000000000000000R000000000R00000RRG000000000R0R00000QAAAAABR000--
DSSPA .EEESSS..EEEEEETTEEEEEEE.TT.SS.EE.S....S..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEES..SS.EE.HHHHHHHT.EEE.
                                                                                                +++
DSSPB .EEESSS..EEEEEETTEEEEEEE.TT.SS.EE.S....S..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEES..SS.EE.HHHHTTTT.EEE.
1
G
N
N
jpg image
  Z-Score: 21.5

RMSD: 0.3A
 
D2cdA --001RG0R000000RRG0000000QBGR000000000000000000000R000000000R00000RRG00000000000R00000QBAAAABR000--
            +                +     +                                                +        +
D2cdB --001R00R000000RRG0000030QBGRG00000000000000000000R000000000R00000RRG000000000R0R00000QAAAAABR000--
DSSPA .EE.SSS..EEEEEETTEEEEEEE.TT.SS.EESS....S..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEES..SS.EE.HHHHTTTT.EEE.
         +                             +                                +++        ++
DSSPB .EEESSS..EEEEEETTEEEEEEE.TT.SS.EEES....S..EEEEEEETTEEEEEEEEEEEEEEESS.EEEEEEEEES.SS.EE.HHHHTTTT.EEE.





[The D2 code]

[The DSSP code]