[Pairs of HIV-1 PR monomers: P61 crystals (3/3)]





DaliLite result D2 code/DSSP state sequences
1
H
T
F
jpg image
  Z-Score: 21.5

RMSD: 0.3A
 
D2cdA --001R00R000000RRG0000030QBGRG00000000000000000000R000000000R00000RRG000000000R0R00000QAAAAABR000--
            +                      +                   ++                                    ++    +
D2cdB --001RG0R000000RRG0000030QBGR000000000000000000000B000000000R00000RRG000000000R0R00000QB1AAAB3000--
DSSPA .EE.SSS..EEEEEETTEEEEEEE.TT.SS.EE.S....S..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEESS.SS.EE.HHHHTTTT.EEE.
             
                          +                                            +
DSSPB .EE.SSS..EEEEEETTEEEEEEE.TT.SS.EESS....S..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEES..SS.EE.HHHHTTTT.EEE.
1
Q
B
S
jpg image
  Z-Score: 21.5

RMSD: 0.3A
 
D2cdA --001R000000000RRG0000030QBGR000000000000000000000R000000000R00000ORG000000000R0R00000QAAAAABR000--
              +              +
D2cdB --001R00R000000RRG0000000QBGR000000000000000000000R000000000R00000ORG000000000R0R00000QAAAAABR000--
DSSPA .EE.SSS..EEEEEETTEEEEEEE.TT.SSEEEES....S..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEE..SS.EE.HHHHHHHT.EEE.
                                       +    +         ++++                         +            +++
DSSPB .EE.SSS..EEEEEETTEEEEEEE.TT.SSEEE.S...SS..EEEEEE.SS.EEEEEEEEEEEEEETTEEEEEEEEES..SS.EE.HHHHTTTT.EEE.
1
M
E
U
jpg image
  Z-Score: 21.5

RMSD: 0.3A
 
D2cdA --00RR00R000000RRG0000000QBGR00000000000000000000R0000000000R00000R0G000000000R0R00000QAAAAABR000--
          +                  +                         ++                +          +
D2cdB --001R00R000000RRG00000R0QBGR000000000000000000000R000000000R00000RRG00000000000R00000QAAAAABR000--
DSSPA .EEETTS..EEEEEETTEEEEEEE.TT.SSEEE.S....S..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEES..SS.EE.HHHHHHHT.EEE.
          ++                                          ++++                          +           +++
DSSPB .EEESSS..EEEEEETTEEEEEEE.TT.SSEEE.S....S..EEEEEE.SS.EEEEEEEEEEEEEETTEEEEEEEEESS.SS.EE.HHHHTTTT.EEE.
1
B
V
7
jpg image
  Z-Score: 21.5

RMSD: 0.3A
 
D2cdA --00PR000000000RRG0000000QBGR000000000000000000000R000000000O00000RRG00000000030R00000QAAAAABR000--
          +   +              +     +                   ++         +     +           +
D2cdB --001R00R000000RRG00000R0QBGRG0000000000000000000QB000000000R000000RG00000000000R00000QAAAAABR000--
DSSPA .EEETTS..EEEEEETTEEEEEEE.TT.SS.EE.S...SS..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEESS.SS.EE.HHHHTTTT.EEE.
         +++                                +
DSSPB .EE.SSS..EEEEEETTEEEEEEE.TT.SS.EE.S....S..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEESS.SS.EE.HHHHTTTT.EEE.
1
O
D
Y
jpg image
  Z-Score: 21.5

RMSD: 0.4A
 
D2cdA --001R00R000000RRG00000R0QBGR00000000000000000000QB000000000R00000RRG000000000R0R00000QAAAAABR000--
                                                                                    +
D2cdB --001R00R000000RRG00000R0QBGR00000000000000000000QB000000000R00000RRG00000000000R00000QAAAAABR000--
DSSPA .EE.SSS..EEEEEETTEEEEEEE.TT.SS.EE.S....S..EEEEEE.SS.EEEEEEEEEEEEEESS.EEEEEEEES..SS.EE.HHHHTTTT.EEE.
                                       
     +            +              +++         +
DSSPB .EE.SSS..EEEEEETTEEEEEEE.TT.SS.EE.S...SS..EEEEEE.SSSEEEEEEEEEEEEEETTEEEEEEEEESS.SS.EE.HHHHTTTT.EEE.
1
B
V
9
jpg image
  Z-Score: 21.4

RMSD: 0.3A
 
D2cdA --00RR00R000000RRG00000R0QBGR000000000000000000000B000000000R00000RRG00000000000R00000QAAAAABR000--
          +                  +                          +                           +
D2cdB --001R00R000000RRG0000030QBGR000000000000000000000R000000000R00000RRG00000000030R00000QAAAAABR000--
DSSPA .EE.TTS..EEEEEETTEEEEEEE.TT.SS.EEES....S..EEEEEE.SB.EEEEEEEEEEEEEETTEEEEEEEEEES.SS.EE.HHHHHHHT.EEE.
          ++                           +    +         ++ +                         +            +++
DSSPB .EE.SSS..EEEEEETTEEEEEEE.TT.SS.EESS...SS..EEEEEEETBEEEEEEEEEEEEEEETTEEEEEEEEESS.SS.EE.HHHHTTTT.EEE.
1
H
B
V
jpg image
  Z-Score: 21.4

RMSD: 0.3A
 
D2cdA --001R00R000000RRG0000030QBGRG0000000000000000000QB000000000R00000RRG000000000R0R000R0QA2AAABR000--
            +                +                         ++                                 +   +    +
D2cdB --001RG0R000000RRG00000R0QBGRG00000000000000000000R000000000R00000RRG000000000R0R00000QAAAAAB3000--
DSSPA .EEESSS..EEEEEETTEEEEEEE.TT.SS.EEES....S..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEES.SS.EE.HHHHTTTT.EEE.
                                       +                                           +
DSSPB .EEESSS..EEEEEETTEEEEEEE.TT.SS.EE.S....S..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEESS.SS.EE.HHHHTTTT.EEE.
1
B
D
R
jpg image
  Z-Score: 21.3

RMSD: 0.3A
 
D2cdA --00RR00R000000RRG00000R0QBGR00000O000000000000000R000000000R00000RRG000000000R0R00000QAAAAABR000--
          +                        +                                                      +
D2cdB --001R00R000000RRG00000R0QBGRG0000O000000000000000R000000000R00000RRG000000000R0R00030QAAAAABR000--
DSSPA .EEETTS..EEEEEETTEEEEEEE.TT.SSEEESS....S..EEEEEE.SS.EEEEEEEEEEEEEETTEEEEEEEEES..SS.EE.HHHHTTTT.EEE.
                                       +              ++++                          +
DSSPB .EEETTS..EEEEEETTEEEEEEE.TT.SSEEE.S....S..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEESS.SS.EE.HHHHTTTT.EEE.
1
G
N
O
jpg image
  Z-Score: 21.3

RMSD: 0.3A
 
D2cdA --00PR00R000000RRG00000R0QBGR000000000000000000000R000000000R00000RR0000000000O0R00000QAAAAABR000--
          + +                +                         ++                 +         +
D2cdB --001RG0R000000RRG0000000QBGR00000000000000000000QB000000000R00000RRG000000000R0R00000QAAAAABR000--
DSSPA .EE.SSS..EEEEEETTEEEEEEE.TT.SS.EE.S....S..EEEEEE.SS.EEEEEEEEEEEEEETTEEEEEEEEES..SS.EE.HHHHTTTT.EEE.
       
 +                             +                                           ++
DSSPB .EEESSS..EEEEEETTEEEEEEE.TT.SS.EEES....S..EEEEEE.SS.EEEEEEEEEEEEEETTEEEEEEEEEES.SS.EE.HHHHTTTT.EEE.
1
Q
B
R
jpg image
  Z-Score: 21.3

RMSD: 0.3A
 
D2cdA --00RR00R000000RRG0000000QBGR000000000000000000000R000000000R00000R0G000000000R0R00000QAAAAABR000--
                             +                         +         +       +          +        ++    +
D2cdB --00RR00R000000RRG0000030QBGR000000000000000000001R000000001R00000RRG00000000000R00000QB1AAAB0000--
DSSPA .EEETTS..EEEEEETTEEEEEEE.TT.SS.EE.S....S..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEES..SS.EE.HHHHHHHT.EEE.
          ++                                          ++++                          +
DSSPB .EEESSS..EEEEEETTEEEEEEE.TT.SS.EE.S....S..EEEEEE.SS.EEEEEEEEEEEEEETTEEEEEEEEESS.SS.EE.HHHHHHHT.EEE.
1
S
H
9
jpg image
  Z-Score: 21.2

RMSD: 0.3A
 
D2cdA --001RG0R000000RRG00000R0QBGRG00000000000003000000R000000000R00000RRG00000000000R00000QAAAAABR000--
                                   +             +     ++                                    -
D2cdB --001RG0R000000RRG00000R0QBGR00000000000000000000QB000000000R00000RRG00000000000R00000QBAAAABR000--
DSSPA .EEESSS..EEEEEETTEEEEEEE.TT.SSEEESS....S..EEEEEE.SS.EEEEEEEEEEEEEETTEEEEEEEEES..SS.EE.HHHHTTTT.EEE.
         +                          +
DSSPB .EE.SSS..EEEEEETTEEEEEEE.TT.SS.EESS....S..EEEEEE.SS.EEEEEEEEEEEEEETTEEEEEEEEES..SS.EE.HHHHTTTT.EEE.
1
S
B
G
jpg image
  Z-Score: 21.2

RMSD: 0.3A
 
D2cdA --00RR00R0000000RG0000030QBGRG0000000000000000000QB000000000R00000RRG000000000R0R00000QAAAAABR000--
          +          +       +                         ++             +  +          +        +
D2cdB --001R00R000000RRG00000R0QBGRG00000000000000000000R000000000R000R0ROG00000000000R00000QBAAAABR000--
DSSPA .EEETTS..EEEEEETTEEEEEEE.TT.SSEEEES....S..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEE..SS.EE.HHHHTTTT.EEE.
                                    +  +                                  +        ++
DSSPB .EEETTS..EEEEEETTEEEEEEE.TT.SS.EE.S....S..EEEEEEETTEEEEEEEEEEEEEEETT.EEEEEEEESS.SS.EE.HHHHTTTT.EEE.
1
M
U
I
jpg image
  Z-Score: 21.1

RMSD: 0.3A
 
D2cdA --001R00R000000RRG0000030QBGR00000000000000000000QB000000000R00000RRG000000000R0R00000QAAAAABR000--
                             +                                        +                      ++
D2cdB --001R00R000000RRG00000R0QBGR0000000000G000000000QB000000000R00030RRG000000000R0R00000QB1AAABR000--
DSSPA ..B.SSS..EEEEEETTEEEEEEE.TT.SSEEE.S...SS..EEEEEE.SS.EEEEEEEEEEEEEETTEEEEEEEEESS.SS.EE.HHHHGGGT.EEE.
      
 ++                              +    +                                      +    +       +++
DSSPB .EE.SSS..EEEEEETTEEEEEEE.TT.SSEEEES....S..EEEEEE.SS.EEEEEEEEEEEEEETTEEEEEEEEEES.SSEEE.HHHHTTTT.EEE.
1
D
M
P
jpg image
  Z-Score: 21.0

RMSD: 0.4A
 
D2cdA --001R000000000RRG00000R0QBGRG000000000000000000000000000000R000000RG000000000R0R000001AAAAABR000--
              +              +     +                    +                           +  +    +      +
D2cdB --001R00R000000RRG0000000QBGR000000000000000000000R000000000R000000RG00000000000RG0000QAAAAAB0000--
DSSPA .EE.SSS..EEEEEETTEEEEEEE.TT.SSEEEES....S..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEE..SS.EE.HHHHHHHT.EEE.
         +                          +  +                                +++        ++           +++
DSSPB .EEESSS..EEEEEETTEEEEEEE.TT.SS.EE.S....S..EEEEEEETTEEEEEEEEEEEEEEESS.EEEEEEEESS.SS.EE.HHHHTTTT.EEE.
1
H
W
R
jpg image
  Z-Score: 21.0

RMSD: 0.5A
 
D2cdA --001R00R000000RRG00000R0QBGR000000000R0R000000000R000000000R000030RG00000000000R00000QAAAAABR000--
            + +              +              + +         +              ++ +
D2cdB --001RG0O000000RRG0000000QBGR000000000000000000000B000000000R00000RRO00000000000R00000QAAAAABR000--
DSSPA .EEESSS..EEEEEETTEEEEEEE.TT.SSEEE.S.......EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEESS.SS.EE.HHHHTTTT.EEE.
         +                             +     +        ++++                         +
DSSPB .EE.SSS..EEEEEETTEEEEEEE.TT.SSEEEES....S..EEEEEE.SS.EEEEEEEEEEEEEETTEEEEEEEEEES.SS.EE.HHHHTTTT.EEE.
1
H
P
S
jpg image
  Z-Score: 20.9

RMSD: 0.4A
 
D2cdA --001R00R000000RRG0000000QBGR00000R0R000000000000QB000000000R00000RRG000000000R0R00000QAAAAABR000--
            +                +     +    + +            ++
D2cdB --001RG0R000000RRG00000R0QBGRG00000000000000000000R000000000R000O0RRG000000000R0R00000QAAAAABR000--
DSSPA .EEESSS..EEEEEETTEEEEEEE.TT.SS.EE.S....S..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEES..SS.EE.HHHHGGGT.EEE.
                                    +  +                                +++        ++           +++
DSSPB .EEESSS..EEEEEETTEEEEEEE.TT.SSEEEES....S..EEEEEEETTEEEEEEEEEEEEEEESS.EEEEEEEEES.SS.EE.HHHHTTTT.EEE.
1
H
V
H
jpg image
  Z-Score: 20.8

RMSD: 0.4A
 
D2cdA --001R00O000000RRG0000030QBGR0000000000000000000030000000000R00000RR0000000000R0R00000QAAAAABR000--
              +                                        ++                 +         +
D2cdB --001R00R000000RRG0000030QBGR000000000000000000000R000000000R00000RRG00000000000R00000QAAAAABR000--
DSSPA .EEESSS..EEEEEETTEEEEEEE.TT.SSEEEES....S..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEES.SS.EE.HHHHTTTT.EEE.
         +                             +              ++++                         ++
DSSPB .EE.SSS..EEEEEETTEEEEEEE.TT.SSEEE.S....S..EEEEEE.SS.EEEEEEEEEEEEEETTEEEEEEEEES..SS.EE.HHHHTTTT.EEE.
1
Q
B
U
jpg image
  Z-Score: 20.7

RMSD: 0.5A
 
D2cdA --00RR00R000000RRG0000030QBGR000000000000000000000R000000000R00000RRG00000000000R00000QBAAAABR000--
             +                                          +                           +        +
D2cdB --00RR0OR000000RRG0000030QBGR000000000000000000000B000000000R00000RRG000000000R0R00000QAAAAABR000--
DSSPA .EEETTS..EEEEEETTEEEEEEE.TT.SSEEESS...SS..EEEEEE.SBEEEEEEEEEEEEEEETTEEEEEEEEES..SS.EE.HHHHHHHT.EEE.
      
 +                            +  +              ++                                        +++
DSSPB ..EETTS..EEEEEETTEEEEEEE.TT.SS.EE.S...SS..EEEEEEETBEEEEEEEEEEEEEEETTEEEEEEEEES..SS.EE.HHHHTTTT.EEE.
9
H
V
P
jpg image
  Z-Score: 20.6

RMSD: 0.4A
 
D2cdA --00RR00R0000000RG00000R0QBGRG0000000000000000000QB000000000R000O0RRG00000000000R00000QBAAAABR000--
          +          +                                 ++         +   +             +     +  +
D2cdB --001R00R000000RRG00000R0QBGRG00000000000000000000R0000000000000R0RRG00000000030R000R0QAAAAABR000--
DSSPA .EEETTS....EEEETTEEEE.EE.TT.SS.EE......S..EEEEEE.SS.EEEEEEEEEEEEEETTEEEEEEEEESS.SS.EE.HHHHTTTT.EEE.
       +       ++          +           ++                                          +
DSSPB ..EETTS..EEEEEETTEEEEEEE.TT.SS.EEES....S..EEEEEE.SS.EEEEEEEEEEEEEETTEEEEEEEEEES.SS.EE.HHHHTTTT.EEE.
1
B
D
Q
jpg image
  Z-Score: 20.3

RMSD: 0.6A
 
D2cdA --00QRG0R000000RRG00000R0QBGRG0000R0R0000000030001R000000000R00000RRG000000030R0R000R0QAAAAABR000--
          + +                           + +        +   +                          +       +
D2cdB --00RR00R000000RRG00000R0QBGRG00000000000000000000R000000000R000R0RRG000000000R0R00030QAAAAABR000--
DSSPA .EEETTS..EEEEEETTEEEEEEE.TT.SSEEESS....S..EEEEEE.SS.EEEEEEEEEEEEEETTEEEEEEEEE...SSEEE.HHHHHHHT.EEE.
                                                      ++++                         +++  +       +++
DSSPB .EEETTS..EEEEEETTEEEEEEE.TT.SSEEEES....S..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEES.SS.EE.HHHHTTTT.EEE.
1
V
I
J
jpg image
  Z-Score: 20.2

RMSD: 0.5A
 
D2cdA --001R00R000000RRG0000000QBGR00000003000000000000QB000000000R00000RRG000000000R0R00000QB1ABHBR000--
          +                  +     +      +            ++        +        +         +           ++
D2cdB --00RR00R000000RRG00000O0QBGRG000000000000000000000000000001R00000RR000000000000R00000QB1AAABR000--
DSSPA .EEETTS..EEEEEETTEEEEEEE.TT.SS.BEES....S..B..EEE.SS.EEE.EEEEEEEEEETTEEEEEEEEEES.SSEEE.HHHHTTTT.EEE.
                      
               +          +++   ++++   +          +++         +   +
DSSPB .EEETTS..EEEEEETTEEEEEEE.TT.SS.EEES....S...EEEEEETTEEEEEEEEEEEEEEESS.EEEEEEEEE..SS.EE.HHHHTTTT.EEE.
1
B
D
L
jpg image
  Z-Score: 19.8

RMSD: 0.6A
 
D2cdA --00PRG00000000RRG0000000QBGRG0000R000000000000000RG00000000R00000RRG000000000R0R000R0QAAAAABR000--
          +   +              +                                    +
D2cdB --00QRG0R000000RRG00000R0QBGRG0000R000000000000000R000000R00000000RRG000000000R0R000R0QAAAAAB0000--
DSSPA .EEETTS..EEEEEETTEEEEEEE.TT.SS.EESS....S..EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEE...SS.EE.HHHHTTTT.EEE.
      
 +                            +  +              ++++                         ++
DSSPB ..EETTS..EEEEEETTEEEEEEE.TT.SSEEE.S....S..EEEEEE.SS.EEEEEEEEEEEEEETTEEEEEEEEESS.SS.EE.HHHHTTTT.EEE.





[The D2 code]

[The DSSP code]