• Backbone structures are obtained using ProteinViewer, where N-terminal is colored red and C-terminal blue.
• Click the images to view larger image.
• In the images of superimposition, the C-terminal of the first sequence is connected with the N-terminal of the second sequecne (because of the DaliLite output format).
• DSSP / D2 code / PB code: "*" indicates the position of the residues that assume different DSSP states / D2 codes / PB codes.
  
• dAngle-1: "*" indicates the position of the residues where the difference of the PHI angles or PSI angles between the two chains is more than or equal to 100°.  (dPHI=X or dPSI=X)
• dAngle-2: "*" indicates the position of the residues where the difference of the PHI angles and PSI angles between the two chains is more than or equal to 30°.  (dPHI>=3 and dPSI>=3)
• Angle-ALL: "+" indicates the union of "*" of dAngle-1 and "*" of  dAngle-2
• Core: "0" indicates the position of the residues where the difference of the PHI angles and PSI angles between the two chains is less than 10°.  (dPHI=0 and dPSI=0)
• FATCAT / FlexProt / RAPIDO / DynDom: "n" indicates the residues of the n-th rigid body. "*" indicates flexible regions. " " indicates not-aligned residues.
• Hinge-ALL: "+" indicates the position of the flexible or hinge regions identified by either FATCAT, FlexProt, RAPIDO, or DynDom. 

(1) Cluster 6

				Z-Score: 11.6 AR: 68 RMSD: 1.1A SI: 100%
1bmb A (len 98)	1fyr B (len 98)		DaliLite result

	1         2         3         4         5         6         7         8         9        10  1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
1bmb 1fyr	KPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQ MKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIE
DSSP	*   *                                 *    ** **         ***           *
D2 code	* *                   *        *                  *                                  *
PB code	*                                ****    *****
dAngle-1 dAngle-2	**
Angle-ALL	++
Core	0  0000  0000000000000  0000000  0 00000 00     0 00000    0  0     000000000 00  0000000  0
FATCAT FlexProt RAPIDO DynDom	1111111111111111111111111111111111111111111111111111111111111111112222222222222222222222222222222  1111111111111111111111111111111111111111111111111111111111111111111222222222222222222222222222222  1111111111111111111111111111111111111111111111111111111111111111111222222222222222222222222222222    11111111111111111111111111111111111111111111111111111111111111*****22222222222222222222222222
Hinge-ALL	+++                                                             +++++                         +++

(2) Cluster 7

				Z-Score: 11.3 AR: 73 RMSD: 1.0A SI: 100%
1brs B (len 110)	1yvs (len 108)		DaliLite result

	1         2         3         4         5         6         7         8         9        10   123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678
1brs 1yvs	AQVINTFDGVADYLQTYHKLPDNYITKSEAQALGWVASKGNLADVAPGKSIGGDIFSNREGKLPGKSGRTWREADINYTSGFRNSDRILYSSDWLIYKTTDHYQTFTKIR   VINTFDGVADYLQTYHKLPDNYITKSEAQALGWVASKGNLADVAPGKSIGGDIFSNREGKLPGKSGRTWREADINYTSGFRNSDRILYSSDWLIYKTTDHYQTFTKIR
DSSP	**           ****         **       **
D2 code	*                   *****                                                           *
PB code	*                              ***** **             *   *                 *                        *
dAngle-1 dAngle-2	** *                                        *
Angle-ALL	++ +
Core	000 000000 0000000 0000000000  0       0000000000000  0  0 00   00 000000 00 000  000000  0000 000 00000
FATCAT FlexProt RAPIDO DynDom	111111111111111111111111111111111112222222222222222222222222222222222222222222222222222222222222222222222222   111111111111111111111111111111111112222222222222222222222222222222222222222222222222222222222222222222222222   222222222222222222222222222222222222**1111111111111111111111111111111111111111111111111111111111111111111111     11111111111111111111111111111111*******22222222222222222222222222222222222222222222222222222222222222222
Hinge-ALL	+++                               +++++++                                                                +++

(3) Cluster 8

				Z-Score: 17.0 AR: 112 RMSD: 1.5A SI: 100%
1c0b A (len 124)	1f0v A (len 124)		DaliLite result

	1         2         3         4         5         6         7         8         9        10        11        12 1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234
1c0b 1f0v	KETAAAKFERQHMDSSTSAASSSNYCNQMMKSRNLTKDRCKPVNTFVHESLADVQAVCSQKNVACKNGQTNCYQSYSTMSITDCRETGSSKYPNCAYKTTQANKHIIVACEGNPYVPVHFDASV KETAAAKFERQHMDSSTSAASSSNYCNQMMKSRNLTKDRCKPVNTFVHESLADVQAVCSQKNVACKNGQTNCYQSYSTMSITDCRETGSSKYPNCAYKTTQANKHIIVACEGNPYVPVHFDASV
DSSP	*             * *   **          **                             **   *                *******               ***********
D2 code	**     **     *   *  **           **  **                       **    *    *         *** ****                 **
PB code	***      * ** ******           ******       **           * ****  ******  ****      *********      ******    ******     *
dAngle-1 dAngle-2	**                *                **                            *****                **  *                   **        *  **                    *           * *                            ** *                *** **  *               * *       * *
Angle-ALL	++                +   +           +++                            +++++               +++ ++  +               +++       +++
Core	00 0  00        0  000 00           000     00 00 0  00           000      0 0 0          0          0        0
FATCAT FlexProt RAPIDO DynDom	1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111   111111111111111111***111111111111111111**11111111111111111111111****11111111111111*****   11111111111111111111* (No dynamic domains)
Hinge-ALL	+++                 +++                  ++                       ++++              ++++++++                    ++++

(4) Cluster 9

				Z-Score: 13.4 AR: 86 RMSD: 4.6A SI: 88%
1cm1 A (len 143)	1g4y R (len 147)		DaliLite result

	1         2         3         4         5         6         7         8         9        10        11        12        13        14    123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234
1cm1 1g4y	LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA
DSSP	*         **       **   ** **       **   *    *        *** *               **   *          *
D2 code	**                                  * ****         *      ** *** **       **                *** *             *** *    *
PB code	*               ********** *                         * ****                   ****
dAngle-1 dAngle-2	**  **  *                            ****     *                                                 *                  **  *** **                              **
Angle-ALL	+                                                 +                  +++ +++ ++                            ++++
Core	0   000   0       0 000000000000000   000000000      00    0   0              0 000   0 0      000000        000000  000 0  0    0    0 00
FATCAT FlexProt RAPIDO DynDom	111111111111111111111111111111111111111111111111111111111111111111111111*****222222222222222222222222222222222222222222222222222222222222222222    11111111111111111111111111111111111111111111111111111111111111111111111111111122222222222222222222222222222222222222222222222222222222222222222    11111111111111111111111111111111111111111111111111111111111111111111111***      222222222222222222**3333****   3333333333333*222222222*********      11111111111111111111111111111111111111111111111111111111111111111111**********2222222222222222222222**33333333333333333333**222222222222222
Hinge-ALL	+++                                                                   +++++++++++                 ++  ++++++++++            ++        +++++++++

(5) Cluster 10

			No Significant Similarity	Z-Score: - AR: - RMSD: -A SI: -%
1d2z C res78-129 (len 52)	1ik7 A (len 52)		DaliLite result

	1         2         3         4         5         6         7         8         9        10 1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
1d2z 1ik7	GSHMSHLDNTMAIRLLPLPVRAQLCAHLDALDVWQQLATAVKLYPDQVEQISSQKQRGRSASNEFLNIWGGQYNHTVQTLFALFKKLKLHNAMRLIKDYVSEDLHKYI                                                         RGRSASNEFLNIWGGQYNHTVQTLFALFKKLKLHNAMRLIKDYVSEDLHKYI
DSSP	* **         *******          ***      *********
D2 code	***      *  *******         ****     ** ****
PB code	****         *******        *****       *****
dAngle-1 dAngle-2	***             ***           **          **                                                           *              *             *       *  **
Angle-ALL	+++             +++           ++      +  +++
Core	0 00  0       0000000000   00000          0
FATCAT FlexProt RAPIDO DynDom	1111111111111      2222222222                                                                  1111111111111      2222222222                                                         1111111111111111111222222222222222233333333333333333                                                          22222222222222* 1111111111111333333333***44444444 (No dynamic domains)
Hinge-ALL	+              +++++++++++++    ++++++++++++++++++++

[The D² codes]

• 0 = DDDDD    (Extended strand, small blue spheres)
• 1 = DDDDU
• 2 = DDDUD
• 3 = DDDUU
• 8 = DUDDD
• 9 = DUDDU
• A = DUDUD    (Helix, large red spheres)
• B = DUDUU    (C-cap, large orange spheres)
• G = UDDDD    (Large green spheres)
• H = UDDDU
• I = UDDUD
• J = UDDUU
• O = UUDDD
• P = UUDDU
• Q = UUDUD    (N-cap, large orange spheres)
• R = UUDUU    (Turn, large yellow spheres)

[The DSSP code]

• H = alpha helix
• B = residue in isolated beta-bridge
• E = extended strand, participates in beta ladder
• G = 3-helix (3/10 helix)
• I = 5 helix (pi helix)
• T = hydrogen bonded turn
• S = bend
• L = no assigned structure