• Backbone structures are obtained using ProteinViewer, where N-terminal is colored red and C-terminal blue.
• Click the images to view larger image.
• In the images of superimposition, the C-terminal of the first sequence is connected with the N-terminal of the second sequecne (because of the DaliLite output format).
• DSSP / D2 code / PB code: "*" indicates the position of the residues that assume different DSSP states / D2 codes / PB codes.
  
• dAngle-1: "*" indicates the position of the residues where the difference of the PHI angles or PSI angles between the two chains is more than or equal to 100°.  (dPHI=X or dPSI=X)
• dAngle-2: "*" indicates the position of the residues where the difference of the PHI angles and PSI angles between the two chains is more than or equal to 30°.  (dPHI>=3 and dPSI>=3)
• Angle-ALL: Union of "*" of dAngle-1 and "*" of  dAngle-2
• Core: "0" indicates the position of the residues where the difference of the PHI angles and PSI angles between the two chains is less than 10°.  (dPHI=0 and dPSI=0)
• FATCAT / FlexProt / RAPIDO / DynDom: "n" indicates the residues of the n-th rigid body. "*" indicates flexible regions. " " indicates not-aligned residues.
• Hinge-ALL: "*" indicates the position of the flexible or hinge regions identified by either FATCAT, FlexProt, RAPIDO, or DynDom. 

(1) Cluster 16

				Z-Score: 22.8 AR: 238 RMSD: 8.3A SI: 100%
1fgu A (len 246)	1jmc A (len 238)		DaliLite result

	1         2         3         4         5         6         7         8         9        10   1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
1fgu 1jmc	MSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNN   KVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNN
DSSP	*          *                  ****                            ***                      *
D2 code	* *** *   *              **             *             *                        **  *  *
PB code	*   * *******        ****     ******                  *        * ****     ****      *  ** ** *
dAngle-1 dAngle-2	**                      *                                  **                    **              ***                   *                              *    *               *             *
Angle-ALL	+++++                   +                              +   ++               +    ++       +
Core	0             00    0   00 0                0               0
FATCAT FlexProt RAPIDO DynDom	1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111   1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111   1111111111***111111111111111111*****1111111111111111111111111111111111111111111111111111111111111111     11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
Hinge-ALL	++        +++                  +++++

	11        12        13        14        15        16        17        18        19        20 1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
1fgu 1jmc	ETSVMPCEDDHHLPTVQFDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVLAIKGAR ETSVMPCEDDHHLPTVQFDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVLAIKGAR
DSSP	*  **  **                                   ******             *
D2 code	*****  *          *              *                                          *      *
PB code	*     **********             *            *          ****
dAngle-1 dAngle-2	*  *   *                                       ** **         *    *                                        *
Angle-ALL	++     +  ++  + +                                     ++ +
Core	0               0  0  0     000            00 0          0        00      0   0    00    0   0 0
FATCAT FlexProt RAPIDO DynDom	1111111111111111222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111111111111112222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111*****11111*22222222222222222222222222222222*********222222222222222222222222222222222222222222 111111111111111**22222222222222222222222222222222222222222222222222222222222222222222222222222222222
Hinge-ALL	+++++   +++                                +++++++++

	21        22        23        24        25        26        27        28        29        30 1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
1fgu 1jmc	VSDFGGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQALDGVS VSDFGGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQ
DSSP	**    *  **            **
D2 code	* *            **  *          ***
PB code	** *          ****
dAngle-1 dAngle-2	*            **                   *                *
Angle-ALL	+            ++               +
Core	0           0   000
FATCAT FlexProt RAPIDO DynDom	22222222222222222222222222222222222222 22222222222222222222222222222222222222 22*****222222222222222222222222222222* 222222222222222222222222222222222222
Hinge-ALL	+++++                             ++

(2) Cluster 17

				Z-Score: 26.9 AR: 199 RMSD: 2.0A SI: 96%
1fm6 A (len 232)	1g1u B (len 229)		DaliLite result

	1         2         3         4         5         6         7         8         9        10     1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
1fm6 1g1u	NEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGL     PVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGL
DSSP	*    ******   ***** *****                  **   ***                         ****  *
D2 code	** ************  ***                                                        *
PB code	*       *********** ********  **                                                       *** *
dAngle-1 dAngle-2	** **   *** * *      *                                                        **                *** *    **  ***  **                                                           ***
Angle-ALL	+++ ++   +++ +++  ++  +                                                        +++
Core	00        0                 0 00 0000 000 0  00 000 0  000000   0 00 0000000000
FATCAT FlexProt RAPIDO DynDom	1111111111111111111111 1111111111  11111111111111111111111111111111111111111111111111111111111111111     1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111     11111111111111111111*    *******************11111111111111111111111111111111111111111111111111111111 No dynamic domains were found
Hinge-ALL	++++++++++++++++++++++++

	11        12        13        14        15        16        17        18        19        20 1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
1fm6 1g1u	HVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGL HVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGL
DSSP	*     *   **               *               *   *
D2 code	*        **                                   *                             *
PB code	*                                  * *                                *
dAngle-1 dAngle-2	**
Angle-ALL	++
Core	0          000 00000000000 00 0000000000       0      0000000   00000  00 0 00 00000000000000 0
FATCAT FlexProt RAPIDO DynDom	1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 No dynamic domains were found
Hinge-ALL

	21        22        23        24        25        26        27        28        29        30 1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
1fm6 1g1u	KCLEHLFFFKLIGDTPIDTFLMEMLEAP KCLEHLFFFKLIGDTPIDTFLMEMLEAPH
DSSP	**    **********    ***
D2 code	***     ********    **
PB code	**    ***** *****    **
dAngle-1 dAngle-2	*    **********      *     ****    *** *
Angle-ALL	++++  ++++++++++      +
Core	00                  00 0
FATCAT FlexProt RAPIDO DynDom	1111111111  11111 111111111 11111**********  *********** No dynamic domains were found
Hinge-ALL	+++++++++++++++++++++++

(3) Cluster 18

				Z-Score: 28.4 AR: 213 RMSD: 1.8A SI: 99%
1fsg A (len 233)	1qk3 A (len 228)		DaliLite result

	1         2         3         4         5         6         7         8         9        10    1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
1fsg 1qk3	GSHMASKPIEDYGKGKGRIEPMYIPDNTFYNADDFLVPPHCKPYIDKILLPGGLVKDRVEKLAYDIHRTYFGEELHIICILKGSRGFFNLLIDYLATIQKYSG    MASKPIEDYGKGKGRIEPMYIPDNTFYNADDFLVPPHCKPYIDKILLPGGLVKDRVEKLAYDIHRTYFGEELHIICILKGSRGFFNLLIDYLATIQKYSG
DSSP	**        *                        ****** *  **                              *** **              **
D2 code	*                       ****  *                   *    *     * ******            ****
PB code	N.A.
dAngle-1 dAngle-2	**  *               **                                                                                 **  *               *
Angle-ALL	+++ ++              +++
Core	00000000  000000000 00      0000  00000     000 00000000000000    0000  0          0000000000000
FATCAT FlexProt RAPIDO DynDom	1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111    1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111    11111111111111111111111111111111111*********1111111111111111111111111111111*****   111111111111111** No dynamic domains were found
Hinge-ALL	+++++++++                               ++++++++               ++

	11        12        13        14        15        16        17        18        19        20 1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
1fsg 1qk3	RESSVPPFFEHYVRLKSYQNDNSTGQLTVLSDDLSIFRDKHVLIVEDIVDTGFTLTEFGERLKAVGPKSMRIATLVEKRTDRSNSLKGDFVGFSIEDVWI RESSVPPFFEHYVRLKSYQNDNSTGQLTVLSDDLSIFRDKHVLIVEDIVDTGFTLTEFGERLKAVGPKSMRIATLVEKRTDRSNSLKGDFVGFSIEDVWI
DSSP	***   *      ***************  *  *                                            * ***** *        *
D2 code	**** *       *    *** *       ****     *                                     * *** *
PB code	N.A.
dAngle-1 dAngle-2	**   **      * *  *   *      **                                                 * ** **            ***  *                                                           * *  *
Angle-ALL	+++   ++      +++  +   +      ++                                               + + ++
Core	0   0         000000000 00  0000 00000000000000000000 00 0       0000000000 0
FATCAT FlexProt RAPIDO DynDom	1111111111111111            111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111         2222222222222222222222222222222222222222222222222222222222222222222222222 ********111*****                 111111111111111111111111111111111111111111111111***1111111111111111 No dynamic domains were found
Hinge-ALL	+++++++++++++++++++++++++++++++++                                                +++

	21        22        23        24        25        26        27        28        29        30 1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
1fsg 1qk3	VGCCYDFNEMFRDFDHVAVLSDAARKKFEK VGCCYDFNEMFRDFDHVAVLSDAARKKF
DSSP	*  **   * *          *
D2 code	** *    **  *
PB code	N.A.
dAngle-1 dAngle-2	**     **           *
Angle-ALL	++     ++
Core	00     0           00000
FATCAT FlexProt RAPIDO DynDom	1111111111111111111111111111 2222222222222222222222222222 111***********11111111111*** No dynamic domains were found
Hinge-ALL	+++++++++++           +++

(4) Cluster 19

				Z-Score: 3.4 AR: 74 RMSD: 5.3A SI: 14%
1go4 E (len 87)	1go4 F (len 87)		DaliLite result

	1         2         3         4         5         6         7         8         9        10 1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
1goE 1goF	FSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRAME FSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRAME
DSSP	*****                              *****                                          **
D2 code	*                                *****     **                                  *  *
PB code	**                               * ******   *
dAngle-1 dAngle-2	*                                  * * *  * *                                    * *                                          *
Angle-ALL	+ +                                + + + +                                          +
Core	0000 00   00000  0000000  0   0   0    00000000 00000000000     0   0000
FATCAT FlexProt RAPIDO DynDom	1111111111111111111111111111111111111XX11111XX22222222222222222222222222222222222222222 11111111111111111111111111111111111111111111122222222222222222222222222222222222222222   22222222222222222222222222222222222*****111111111111111111111111111111111111111111**1   111111111111111111111111111111111**********2222222222222222222222222222222222222222
Hinge-ALL	++                                 ++++++++++++                                     +++

(5) Cluster 20

				Z-Score: 12.2 AR: 102 RMSD: 7.1A SI: 100%
1gv2 A (len 102)	1h89 C (len 115)		DaliLite result

	1         2         3         4         5         6         7         8         9        10             1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
1gv2 1h89	ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR QCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRR
DSSP	*                      **      *                   ***  *                 *         *             **
D2 code	**               **                         *  **** ***              *            * *         * *
PB code	***                  * **                        ********                           *
dAngle-1 dAngle-2	**                   **                          * ***                                          *                                                                                                                *
Angle-ALL	++                   ++                          + +++                                          +
Core	0000      0        0  0   000000000  00            000 0 000   0 0   00 0     0000  00
FATCAT FlexProt RAPIDO DynDom	111111111111111111111111111111111111111111111111111112222222222222222222222222222222222222222222222222              111111111111111111111111111111111111111111111111111112222222222222222222222222222222222222222222222222              11111111111111111111**1111111111111111111111111111111****222222222222222222222222222222222222222222222 ERROR : Invalid Parameter(s)
Hinge-ALL	++                              +++++

[The D² codes]

• 0 = DDDDD    (Extended strand, small blue spheres)
• 1 = DDDDU
• 2 = DDDUD
• 3 = DDDUU
• 8 = DUDDD
• 9 = DUDDU
• A = DUDUD    (Helix, large red spheres)
• B = DUDUU    (C-cap, large orange spheres)
• G = UDDDD    (Large green spheres)
• H = UDDDU
• I = UDDUD
• J = UDDUU
• O = UUDDD
• P = UUDDU
• Q = UUDUD    (N-cap, large orange spheres)
• R = UUDUU    (Turn, large yellow spheres)

[The DSSP code]

• H = alpha helix
• B = residue in isolated beta-bridge
• E = extended strand, participates in beta ladder
• G = 3-helix (3/10 helix)
• I = 5 helix (pi helix)
• T = hydrogen bonded turn
• S = bend
• L = no assigned structure