• Backbone structures are obtained using ProteinViewer, where N-terminal is colored red and C-terminal blue.
• Click the images to view larger image.
• In the images of superimposition, the C-terminal of the first sequence is connected with the N-terminal of the second sequecne (because of the DaliLite output format).
• DSSP / D2 code / PB code: "*" indicates the position of the residues that assume different DSSP states / D2 codes / PB codes.
  
• dAngle-1: "*" indicates the position of the residues where the difference of the PHI angles or PSI angles between the two chains is more than or equal to 100°.  (dPHI=X or dPSI=X)
• dAngle-2: "*" indicates the position of the residues where the difference of the PHI angles and PSI angles between the two chains is more than or equal to 30°.  (dPHI>=3 and dPSI>=3)
• Angle-ALL: Union of "*" of dAngle-1 and "*" of  dAngle-2
• Core: "0" indicates the position of the residues where the difference of the PHI angles and PSI angles between the two chains is less than 10°.  (dPHI=0 and dPSI=0)
• FATCAT / FlexProt / RAPIDO / DynDom: "n" indicates the residues of the n-th rigid body. "*" indicates flexible regions. " " indicates not-aligned residues.
• Hinge-ALL: "*" indicates the position of the flexible or hinge regions identified by either FATCAT, FlexProt, RAPIDO, or DynDom. 

(1) Cluster 36

				Z-Score: 25.6 AR: 200 RMSD: 2.8A SI: 90%
1m1g A (len 240)	1m1g B (len 242)		DaliLite result

	1         2         3         4         5         6         7         8         9        10   1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
1m1A 1m1B	LEKKWYALQVEPGKENEAKENLLKVLELEGLKDLVDEVIVPAEEKVVIRAQGKEKYRLSLKGNARDISVLGKKGVTTFRIENGEVKVVESVEGDTCVNAP QELEKKWYALQVEPGKENEAKENLLKVLELEGLKDLVDEVIVPAEEKVVIRAQGKEKYRLSLKGNARDISVLGKKGVTTFRIENGEVKVVESVEGDTCVNAP
DSSP	*       ***                  *                           ****      *      *
D2 code	*                         *          *                     *                    ***
PB code	*                            *  *    **                    * *         *     ****     ****     **
dAngle-1 dAngle-2	*                                                                               *    *                     *                                                        **
Angle-ALL	+                     +                                                        ++
Core	0      0   00000     0       0         0   0      0 0 000      000      0      0  00  0000     0
FATCAT FlexProt RAPIDO DynDom	1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111   1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111   1111111111111111111111111111111111111111111112222222222222222222222222222222222222222222222222222222     1111111111111111111111111111111111111***2222222222222222222222222222222222222222222222222222222222
Hinge-ALL	++                                     +++  ++

	11        12        13        14        15        16        17        18        19        20 1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
1m1A 1m1B	PISKPGQKITCKENKTEAKIVLDNKIFPGYILIKAHMNDKLLMAIEKTPHVFRPVMVGGKPVPLKEEEVQNILNQIKRGVKPSKVEFEKGDQVRVIEGPF PISKPGQKITCKENKTEAKIVLDNKIFPGYILIKAHMNDKLLMAIEKTPHVFRPVMVGGKPVPLKEEEVQNILNQIKRGVKPSKVEFEKGDQVRVIEGPF
DSSP	**                     *                          ******   *  *
D2 code	*        *         ****         *                                      ** * ***  *
PB code	****      *                ****         * *       *                    ****** *****  ****
dAngle-1 dAngle-2	** ** *****                                                         *                  ** * *  * **         *
Angle-ALL	+                  ++++ ++ +++++        +
Core	00 0       0          000           00    0     00 0       0    0  00                          0
FATCAT FlexProt RAPIDO DynDom	11111111111111111111111111111111111111111111111111111111111111111111111111111111  222222222222222222 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111122222222222222 222222222222222222211111111111111111111111111111111111111111111111111111111111**    *333333333333333 22222222222222222222222**1111111111111111111111111111111111111111**********************3333333333333
Hinge-ALL	++   ++                                        ++++++++++++++++++++++

	21        22        23        24        25        26        27        28        29        30 1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
1m1A 1m1B	MNFTGTVEEVHPEKRKLTVMISIFGRMTPVELDFDQVEKI MNFTGTVEEVHPEKRKLTVMISIFGRMTPVELDFDQVEKI
DSSP	****  ***                ****
D2 code	**   *** * * *  *  *         **
PB code	*           **                     * *
dAngle-1 dAngle-2	**
Angle-ALL	++
Core	00000                 00 0     00
FATCAT FlexProt RAPIDO DynDom	2222222222222222222222222222222222222222 2222222222222222222222222222222222222222 33333333333**33333333*****33333333333333 33333333333333333333333333333333333333
Hinge-ALL	++        +++++            ++

(2) Cluster 37

				Z-Score: 17.0 AR: 116 RMSD: 8.9A SI: 100%
1m46 A (len 148)	1n2d A (len 147)		DaliLite result

	1         2         3         4         5         6         7         8         9        10  1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
1m46 1n2d	SATRANKDIFTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLDQITGLIEVNEKELDATTKAKTEDFVKAFQVFDKESTGKVS   ATRANKDIFTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLDQITGLIEVNEKELDATTKAKTEDFVKAFQVFDKESTGKVS
DSSP	*     *                     ***   *
D2 code	** *                       *     *   *   *
PB code	*                                                                         *
dAngle-1 dAngle-2	*                                                                      *         *
Angle-ALL	+         +
Core	0  0 000 0    00000  00000000000000000000000  0    0 0000000  00   000000 0 0 00   0  0       0 00
FATCAT FlexProt RAPIDO DynDom	111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111   22 N.A. (Alt. pos. is not supported)  11111111111111111111111111111111111111111111111111111111111111111111111111111122222222222**222222222    11111111111111111111111111111111111111111111111111111111111111111111111111***222222222222222222222
Hinge-ALL	++                                                                          +++          ++    +++

	11        12        13        14        15        16        17        18        19        20 1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
1m46 1n2d	VGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGEIDYKKFIEDVLRQ VGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGEIDYKKFIEDVLRQ
DSSP	*
D2 code	*
PB code	*                  *
dAngle-1 dAngle-2
Angle-ALL
Core	0000000000000    000000000 00  0  0000000000
FATCAT FlexProt RAPIDO DynDom	22222222222222222222222222222222222222222222222 22222222222222222222222222222222222222222222222 222222222222222222222222222222222222222222222
Hinge-ALL	++

(3) Cluster 38

				Z-Score: 28.6 AR: 186 RMSD: 1.2A SI: 100%
1m7g C (len 209)	1m7h C (len 204)		DaliLite result

	1         2         3         4         5         6         7         8         9        10     1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
1m7g 1m7h	STNITFHASALTRSERTELRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFSEADRNENIRRIAEVAKLFADSNSIAITSF     TFHASALTRSERTELRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFSEADRNENIRRIAEVAKLFADSNSIAITSF
DSSP	***              *        *                 ***       *                                     *
D2 code	** *         ***                           * *                     *
PB code	***         ********                                             *
dAngle-1 dAngle-2	**  *          **      **  *          **
Angle-ALL	++  +          ++
Core	00  0 0 0     000000000000000000000000   0  00000  00  00000   000000000000000000000000 00000
FATCAT FlexProt RAPIDO DynDom	111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111             11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111                        111111111111111111111111111111111111111111****************11111111111111111111111 No dynamic domains were found
Hinge-ALL	+++++++++++++++++++                                          ++++++++++++++++

	11        12        13        14        15        16        17        18        19        20 1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
1m7g 1m7h	ISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDPKGLYKKAREGVIKEFTGISAPYEAPANPEVHVKNYELPVQDAVKQIIDYLDTKGY ISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDPKGLYKKAREGVIKEFTGISAPYEAPANPEVHVKNYELPVQDAVKQIIDYLDTKGY
DSSP	*            *  *** *                 **   *      *
D2 code	* **  *                   *                 * *              *
PB code	*                   *                  ***
dAngle-1 dAngle-2	**                  *                        *
Angle-ALL	+                        ++
Core	00  00 000000     0       0000000000000 0   00 000000000  00000 00000  000000000  00  0000000000  00
FATCAT FlexProt RAPIDO DynDom	1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111***11111111111111111111*****111111111111111111111111111111111111111111111111111111 No dynamic domains were found
Hinge-ALL	+++                    +++++

	21        22        23        24        25        26        27        28        29        30 1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
1a1q 1jxp	LPAKK LPAK
DSSP
D2 code
PB code
dAngle-1 dAngle-2
Angle-ALL
Core	000
FATCAT FlexProt RAPIDO DynDom	1111 1111 1111 No dynamic domains were found
Hinge-ALL

(4) Cluster 39

				Z-Score: 4.8 AR: 60 RMSD: 2.2A SI: 95%
1mi7 R (len 103)	1p6z R (len 102)		DaliLite result

	1         2         3         4         5         6         7         8         9        10  123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012
1mi7 1p6z	QQSPYSAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEEVLL  QSPYSAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEEVLL
DSSP	***                      **                               ****        ***
D2 code	****                      *          *                   ******    *******
PB code	*****                                                   ** *****    *** **
dAngle-1 dAngle-2	**                                                       * **        ***     **                                                       *          **
Angle-ALL	++                                                       + ++       ++++
Core	0  000000 0 00 0000000     0 00  0000  00000000000000000 0      0          00000 00000 00 0000
FATCAT FlexProt RAPIDO DynDom	11111111111111111111111111111111111111111111111111111111111111111         2222222222222222222222222222  1111111111111111111111111111111111111111111111111111111111111111       2222222222222222222222222222222     *******111111111111111111111111111111111111111111111111111* 3333333333*222222222222222222222222222*       1111111111111111111111111111111111111111111111111111111***************222222222222222222222222
Hinge-ALL	++++++++++                                                  +++++++++++++++                        +++

(5) Cluster 40

				Z-Score: 33.1 AR: 178 RMSD: 10.3A SI: 100%
1mkm A (len 246)	1mkm B (len 247)		DaliLite result

	1         2         3         4         5         6         7         8         9        10  1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
1mkA 1mkB	MNTLKKAFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRKKDKRYVPGYKLIEYGSFVLRRFNIRDIAHDHLVDIMKRTGETVHLIL HMNTLKKAFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRKKDKRYVPGYKLIEYGSFVLRRFNIRDIAHDHLVDIMKRTGETVHLIL
DSSP	* *             *                             *              *          ** *                  *
D2 code	*            **                 *                        ***
PB code	*            ****                                       ****          *****
dAngle-1 dAngle-2	**                                                        *                                                                            **
Angle-ALL	++                                                       ++
Core	0    00  00   0 000000     0   00  00000    000000  0 0     000000     000  0   0 0 00     0
FATCAT FlexProt RAPIDO DynDom	111111111111111111111111111111111111111111111111111111111111111111111111111  22222222222222222222222  1111111111111111111111111111111111111111111111111111111111111111111111111122222222222222222222222222  11111111111111111111111111111111111111111111111111111111111111111111111111*2222222222222222222222222    11111111111111111111111111111111111111111111111111111111111111111111*******22222222222222222222222
Hinge-ALL	++                                                                    +++++++

	11        12        13        14        15        16        17        18        19        20 1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
1mkA 1mkB	KDGFEGVYIDKVEGEQSIPMVSRLGMKVDLYSTASGKSILAFVPEKELKEYLKIVELKPKTPNTITNPRVLKRELEKIRKRGYAVDNEENEIGIMCVGVP KDGFEGVYIDKVEGEQSIPMVSRLGMKVDLYSTASGKSILAFVPEKELKEYLKIVELKPKTPNTITNPRVLKRELEKIRKRGYAVDNEENEIGIMCVGVP
DSSP	***          *** * *  **    ***        **            *        *                 *
D2 code	*      *** ****       ***        *               ***                       *     **
PB code	**** **** *        **        **           * ***
dAngle-1 dAngle-2	*    *                *    *                   *            *  * *
Angle-ALL	+    +                   +            +  + +
Core	000   000  0            00       0         0                     000 000  0    0  00000    0
FATCAT FlexProt RAPIDO DynDom	2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 22222222222222***2  2222222222222222222222222222222222222222222222222222222222222222222222222222222 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
Hinge-ALL	+++ ++                                                                               +

	21        22        23        24        25        26        27        28        29        30 1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
1mkA 1mkB	IFDHNGYPVAGVSISGVARKFTEEKIEEYSDVLKEKAEEISRKLGY IFDHNGYPVAGVSISGVARKFTEEKIEEYSDVLKEKAEEISRKLGY
DSSP	*
D2 code
PB code	****
dAngle-1 dAngle-2	*                                      *
Angle-ALL	+                                      +
Core	0          0000  0       0 0  00     000
FATCAT FlexProt RAPIDO DynDom	2222222222222222222222222222222222222222222222 2222222222222222222222222222222222222222222222 2222222222222222222222222222222222222222222222 22222222222222222222222222222222222222222222
Hinge-ALL	++

[The D² codes]

• 0 = DDDDD    (Extended strand, small blue spheres)
• 1 = DDDDU
• 2 = DDDUD
• 3 = DDDUU
• 8 = DUDDD
• 9 = DUDDU
• A = DUDUD    (Helix, large red spheres)
• B = DUDUU    (C-cap, large orange spheres)
• G = UDDDD    (Large green spheres)
• H = UDDDU
• I = UDDUD
• J = UDDUU
• O = UUDDD
• P = UUDDU
• Q = UUDUD    (N-cap, large orange spheres)
• R = UUDUU    (Turn, large yellow spheres)

[The DSSP code]

• H = alpha helix
• B = residue in isolated beta-bridge
• E = extended strand, participates in beta ladder
• G = 3-helix (3/10 helix)
• I = 5 helix (pi helix)
• T = hydrogen bonded turn
• S = bend
• L = no assigned structure