• Backbone structures are obtained using ProteinViewer, where N-terminal is colored red and C-terminal blue.
• Click the images to view larger image.
• In the images of superimposition, the C-terminal of the first sequence is connected with the N-terminal of the second sequecne (because of the DaliLite output format).
• DSSP / D2 code / PB code: "*" indicates the position of the residues that assume different DSSP states / D2 codes / PB codes.
  
• dAngle-1: "*" indicates the position of the residues where the difference of the PHI angles or PSI angles between the two chains is more than or equal to 100°.  (dPHI=X or dPSI=X)
• dAngle-2: "*" indicates the position of the residues where the difference of the PHI angles and PSI angles between the two chains is more than or equal to 30°.  (dPHI>=3 and dPSI>=3)
• Angle-ALL: Union of "*" of dAngle-1 and "*" of  dAngle-2
• Core: "0" indicates the position of the residues where the difference of the PHI angles and PSI angles between the two chains is less than 10°.  (dPHI=0 and dPSI=0)
• FATCAT / FlexProt / RAPIDO / DynDom: "n" indicates the residues of the n-th rigid body. "*" indicates flexible regions. " " indicates not-aligned residues.
• Hinge-ALL: "*" indicates the position of the flexible or hinge regions identified by either FATCAT, FlexProt, RAPIDO, or DynDom. 

(1) Cluster 56

				Z-Score: 2.3 AR: 39 RMSD: 6.4A SI: 74%
2beq D (len 46)	2beq F (len 46)		DaliLite result

	1         2         3         4         5         6         7         8         9        10 1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
2beD 2beF	LGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIK LGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIK
DSSP	*                      * *****      **
D2 code	**                      *******      **
PB code	***                     ***** ****
dAngle-1 dAngle-2	*                        **   *                         *
Angle-ALL	+                        ++
Core	0 00 0  000000000000     0     000   0000
FATCAT FlexProt RAPIDO DynDom	111111111111111111111111111111111 XX11111111111111XXXXXXXXXXXXXXX22XXXXXXXXXXXXX   111111111111111111111111111*   XXXXX222XXXXX No dynamic domains were found
Hinge-ALL	++              ++++++++++++++++++++++++++++++

(2) Cluster 57

				Z-Score: 21.2 AR: 131 RMSD: 12.3A SI: 94%
1bjm A (len 215)	1bjm B (len 215)		DaliLite result

	1         2         3         4         5         6         7         8         9        10 1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
1bjA 1bjB	SVLTQPPSASGTPGQRVTISCSGSSSNIGENSVTWYQHLSGTAPKLLIYEDNSRASGVSDRFSASKSGTSASLAISGLQPEDETDYYCAAWDDSLDVAVF SVLTQPPSASGTPGQRVTISCSGSSSNIGENSVTWYQHLSGTAPKLLIYEDNSRASGVSDRFSASKSGTSASLAISGLQPEDETDYYCAAWDDSLDVAVF
DSSP	*            *****   *      ***  *                     ***       *              ***  *
D2 code	*          *    *       ****    *          *           *    ***               *** *
PB code	**     ********          ******     ********    *                              *****   *******
dAngle-1 dAngle-2	**          **                                                 * **                                         ** *                      *                      **
Angle-ALL	++          ++ +                      +                      +++ ++
Core	0000    0 0  0  0             00           0 00                     0    0       00        0 0
FATCAT FlexProt RAPIDO DynDom	1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111  222222222222222222222222222222222222222**2222222222222222222222222222222222222222222222222*******22   11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
Hinge-ALL	++                                      ++                                                 +++++++

	11        12        13        14        15        16        17        18        19        20 1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
1bjA 1bjB	GTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTH GTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTH
DSSP	*             *****                        *** * **            *               **
D2 code	*                    *              *           *  *
PB code	*****                              *****             *                    ****     *
dAngle-1 dAngle-2	*          **                                                                                 *
Angle-ALL	++
Core	000            0000 0        0    00     000 0  00  0  0          0        0  00000         0  000
FATCAT FlexProt RAPIDO DynDom	1111111112222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111111112222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 222222222*111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111**222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
Hinge-ALL	++

	21        22        23        24        25        26        27        28        29        30 1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
1bjA 1bjB	EGSTVEKTVAPTECS EGSTVEKTVAPTECS
DSSP	* **
D2 code	*
PB code	***
dAngle-1 dAngle-2	***            * *
Angle-ALL	+++
Core	0000
FATCAT FlexProt RAPIDO DynDom	222222222222 222222222222222 111111111111** 2222222222222
Hinge-ALL	+++

(3) Cluster 58

				Z-Score: 22.7 AR: 212 RMSD: 9.4A SI: 99%
1jvk A (len 215)	1jvk B (len 214)		DaliLite result

	1         2         3         4         5         6         7         8         9        10 1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
1jvA 1jvB	TALTQPASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEADYYCSSYDGSSTSVV TALTQPASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEADYYCSSYDGSSTSVV
DSSP	*            *       *** * ***                          *                 *              ********
D2 code	*                   ***** **  *              * *        *                        *         **  *
PB code	**         ****     *********** *              * *                              ****   ***********
dAngle-1 dAngle-2	*                      *** * *                                                            ***  *  *                           **                                                             ** ***
Angle-ALL	+                      +++ +++                                                            +++ +++
Core	0 00   0        0           00000 00 0   0  00       0 00 00000  0000    0 0000000   0        0
FATCAT FlexProt RAPIDO DynDom	1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111   2222222222222222222222**    22222222222222222222222222222222222222222222222222222222222222******22   11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
Hinge-ALL	++                      ++++++                                                              ++++++

	11        12        13        14        15        16        17        18        19        20 1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
1jvA 1jvB	FGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVT FGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVT
DSSP	*        **                                         **** *               *               **
D2 code	**                                   *       **
PB code	****                                *  *    ****  **                               *
dAngle-1 dAngle-2	*                                          **          *                                           **    *
Angle-ALL	++                                          ++    +
Core	0 000 00    0  000000000000     0  00000000000  0000         00  000 00000 000000 0 0  00     000000
FATCAT FlexProt RAPIDO DynDom	1111111111112222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111111112222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 2222222222*11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111******22222222222222222222222222222222222222222222222222222222222222222222222222222222222222
Hinge-ALL	++++++

	21        22        23        24        25        26        27        28        29        30 1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
1jvA 1jvB	HEGSTVEKTVAPTAC HEGSTVEKTVAPTA
DSSP	*
D2 code
PB code	*
dAngle-1 dAngle-2
Angle-ALL
Core	0  0000
FATCAT FlexProt RAPIDO DynDom	22222222222222 22222222222222 1111111111111* 222222222222
Hinge-ALL	++

(4) Cluster 59

				Z-Score: 26.2 AR: 143 RMSD: 1.1A SI: 100%
1sk4 A (len 162)	1twq A (len 165)		DaliLite result

	1         2         3         4         5         6         7         8         9        10   1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
1sk4 1twq	PNIIKRSAWEARETHCPKMNLPAKYVIIIHTAGTSCTVSTDCQTVVRNIQSFHMDTRNFCDIGYHFLVGQDGGVYEGVGWHIQGSHTYGFNDIALGIAFI VCPNIIKRSAWEARETHCPKMNLPAKYVIIIHTAGTSCTVSTDCQTVVRNIQSFHMDTRNFCDIGYHFLVGQDGGVYEGVGWHIQGSHTYGFNDIALGIAFI
DSSP	*
D2 code	*                **                                   *
PB code	**                            *                           *                     ****
dAngle-1 dAngle-2	**    **
Angle-ALL	++
Core	00000000 0 0000 0000 00000000000 0000000000000000 0  00  00000000 0 00000000000000 0  00 0000000
FATCAT FlexProt RAPIDO DynDom	1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111   1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111   1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 No dynamic domains were found
Hinge-ALL

	11        12        13        14        15        16        17        18        19        20 1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
1sk4 1twq	GYFVEKPPNAAALEAAQDLIQCAVVEGYLTPNYLLMGHSDVVNILSPGQALYNIISTWPHFKH GYFVEKPPNAAALEAAQDLIQCAVVEGYLTPNYLLMGHSDVVNILSPGQALYNIISTWPHFKH
DSSP	*           *******  ***           **
D2 code	**                       *           ***** ****
PB code	******  ****
dAngle-1 dAngle-2	***   ***            *                                         ** ** *              *
Angle-ALL	+++++ +++            +
Core	00    000000000000000000   0000 0 000            0000 0 0 00
FATCAT FlexProt RAPIDO DynDom	11111111111111111111111111111111111111111     22222222222222222 111111111111111111111111111111111111111111111122222222222222222 11111111111111111111111111111111111111111**   ***************** No dynamic domains were found
Hinge-ALL	++++++++++++++++++++++

(5) Cluster 60

				Z-Score: 19.6 AR: 164 RMSD: 11.2A SI: 67%
2mcg 1 (len 215)	2mcg 2 (len 215)		DaliLite result

	1         2         3         4         5         6         7         8         9        10 1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
2mc1 2mc2	SALTQPPSASGSLGQSVTISCTGTSSDVGGYNYVSWYQQHAGKAPKVIIYEVNKRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYCSSYEGSDNFVF SALTQPPSASGSLGQSVTISCTGTSSDVGGYNYVSWYQQHAGKAPKVIIYEVNKRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYCSSYEGSDNFVF
DSSP	***     *      *   ***** *   ** **    * *       **    **   *        *   *** ***            *
D2 code	*      **         ******* *      *    *  *       **** ***    *               *        ****
PB code	**      *  ****       *********** **************    ******      ****        ********     *******
dAngle-1 dAngle-2	*   *****          *** ****   *****  **         ***                     **           ** *  **     *  ****      *  ***** **      *** *  *         ****         *                       ** **  *
Angle-ALL	++    ++  +++++     +  +++++ ++++   ++++++ ++         ++++         +          ++           ++ ++  +
Core	0               0                       0         0         0          0       0  0 0
FATCAT FlexProt RAPIDO DynDom	1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111   22222222222222222222***X***X*2222222222222222222222222222222222222222222222222222222222222******22   11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
Hinge-ALL	++                    +++++++++                                                             ++++++

	11        12        13        14        15        16        17        18        19        20 1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
2mc1 2mc2	GTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTH GTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTH
DSSP	***** **      *                          *  *             ******   **                           *
D2 code	*     **       *                       * *           *   * *         **                 *     *
PB code	*************       ****      ****           ****         **** **** **** *****   ****
dAngle-1 dAngle-2	****    *                                                 **        ****  ***    ***                  *                *            *    *    ****   *
Angle-ALL	++++   +++                  +                +            ++   +    ++++   +
Core	0              0          0     0     0       0                      0       0        00
FATCAT FlexProt RAPIDO DynDom	1111111111222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111111122222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 22222222**111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111*****2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
Hinge-ALL	+++++

	21        22        23        24        25        26        27        28        29        30 1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
2mc1 2mc2	EGSTVEKTVAPTECS EGSTVEKTVAPTECS
DSSP	***      ****
D2 code	*         ***
PB code	**
dAngle-1 dAngle-2	**  *        *  *
Angle-ALL	+        + ++
Core	0
FATCAT FlexProt RAPIDO DynDom	222222222222 2 222222222222222 11111111111*** 222222222222222
Hinge-ALL	++++

[The D² codes]

• 0 = DDDDD    (Extended strand, small blue spheres)
• 1 = DDDDU
• 2 = DDDUD
• 3 = DDDUU
• 8 = DUDDD
• 9 = DUDDU
• A = DUDUD    (Helix, large red spheres)
• B = DUDUU    (C-cap, large orange spheres)
• G = UDDDD    (Large green spheres)
• H = UDDDU
• I = UDDUD
• J = UDDUU
• O = UUDDD
• P = UUDDU
• Q = UUDUD    (N-cap, large orange spheres)
• R = UUDUU    (Turn, large yellow spheres)

[The DSSP code]

• H = alpha helix
• B = residue in isolated beta-bridge
• E = extended strand, participates in beta ladder
• G = 3-helix (3/10 helix)
• I = 5 helix (pi helix)
• T = hydrogen bonded turn
• S = bend
• L = no assigned structure