ProteinSplitter (ver. 0.2)
- Split a
PDB file into a set of PDB files of all short fragments of the protein.
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[-l length] [-d] filename
A PDB file with suffix
".ent" or ".pdb"
Create a directory
"segXX", which contains ".pdb"
files of amino-acid fragments of length
XX, in the current directory.
ProteinSplitter reads a
and generates all complete fragments of the
where a complete fragment means a fragment with all N and C
The following options are available:
By default, fragmants of
length five are generated. The -l
option specify the length of fragments.
By default, all files of
the generated fragements are stored in directory "segXX" without any
subdirectory. If the -d
option is specified they are organized into a file hierarchy.